Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07666 Brassica carinata HOM05D005240 ORTHO05D006471 5.1e-125 451.1 223 100.0
C04p64800 Brassica napus HOM05D005240 ORTHO05D006471 1.1e-119 433.3 223 96.0
BolC4t27957H Brassica oleracea HOM05D005240 ORTHO05D006471 1.1e-119 433.3 223 96.0
A04p27280 Brassica napus HOM05D005240 ORTHO05D006471 1.5e-116 422.9 222 93.7
BraA04t18226Z Brassica rapa HOM05D005240 ORTHO05D006471 1.5e-116 422.9 222 93.7
BcaB06g28877 Brassica carinata HOM05D005240 ORTHO05D006471 2.7e-102 375.6 213 88.7
Thhalv10017274m.g Eutrema salsugineum HOM05D005240 ORTHO05D006471 7.0e-90 334.3 193 85.5
Sp4g18090 Schrenkiella parvula HOM05D005240 ORTHO05D006471 3.5e-89 332.0 193 85.5
AL4G31940 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 1.8e-82 309.7 186 81.7
Carub.0004s1759 Capsella rubella HOM05D005240 ORTHO05D006471 3.2e-79 298.9 194 74.2
CARHR130080 Cardamine hirsuta HOM05D005240 ORTHO05D006471 3.2e-79 298.9 186 78.5
AL4G31930 Arabidopsis lyrata HOM05D005240 ORTHO05D006471 2.8e-75 285.8 192 74.0
BcaB06g28875 Brassica carinata HOM05D005240 ORTHO05D006471 2.4e-74 282.7 164 82.3
THA.LOC104803452 Tarenaya hassleriana HOM05D005240 ORTHO05D006471 1.2e-73 280.4 187 71.7
AT2G35820 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 2.0e-73 279.6 193 69.9
AT2G35810 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.5e-73 278.9 188 71.8
AT2G35830 Arabidopsis thaliana HOM05D005240 ORTHO05D006471 3.8e-72 275.4 190 72.6
Nitab4.5_0001721g0020 Nicotiana tabacum HOM05D005240 ORTHO05D006471 6.1e-70 268.1 203 63.1
Gohir.A05G344500 Gossypium hirsutum HOM05D005240 ORTHO05D006471 3.0e-69 265.8 180 68.9
Peaxi162Scf00373g00310 Petunia axillaris HOM05D005240 ORTHO05D006471 8.9e-69 264.2 188 67.0
Cc09_g02730 Coffea canephora HOM05D005240 ORTHO05D006471 1.2e-68 263.8 196 63.3
Manes.10G042700 Manihot esculenta HOM05D005240 ORTHO05D006471 1.2e-68 263.8 182 68.1
Nitab4.5_0000061g0160 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.2e-68 263.8 186 67.7
CiPaw.01G276500 Carya illinoinensis HOM05D005240 ORTHO05D006471 1.5e-68 263.5 185 67.6
Solyc10g005830.3 Solanum lycopersicum HOM05D005240 ORTHO05D006471 2.6e-68 262.7 182 65.9
arahy.Tifrunner.gnm1.ann1.9PA5H9 Arachis hypogaea HOM05D005240 ORTHO05D006471 3.4e-68 262.3 180 66.7
Gorai.012G093700 Gossypium raimondii HOM05D005240 ORTHO05D006471 3.4e-68 262.3 180 67.8
Migut.F01799 Erythranthe guttata HOM05D005240 ORTHO05D006471 4.4e-68 261.9 191 64.9
Gohir.D04G083000 Gossypium hirsutum HOM05D005240 ORTHO05D006471 4.4e-68 261.9 180 68.3
Sopen10g001790 Solanum pennellii HOM05D005240 ORTHO05D006471 4.4e-68 261.9 182 65.9
arahy.Tifrunner.gnm1.ann1.CT8M8A Arachis hypogaea HOM05D005240 ORTHO05D006471 2.2e-67 259.6 187 64.7
Lj5g0013716 Lotus japonicus HOM05D005240 ORTHO05D006471 2.2e-67 259.6 185 64.9
RcHm_v2.0_Chr1g0364101 Rosa chinensis HOM05D005240 ORTHO05D006471 3.7e-67 258.8 179 68.2
MSTRG.355 Avicennia marina HOM05D005240 ORTHO05D006471 1.1e-66 257.3 189 64.0
MD07G1179100 Malus domestica HOM05D005240 ORTHO05D006471 1.1e-66 257.3 179 67.6
TWI15G1019 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.1e-66 257.3 185 67.0
Hma1.2p1_0453F.1_g156180 Hydrangea macrophylla HOM05D005240 ORTHO05D006471 1.4e-66 256.9 180 66.7
PGR044G1235 Punica granatum HOM05D005240 ORTHO05D006471 1.4e-66 256.9 191 64.4
Sc14g0005480 Simmondsia chinensis HOM05D005240 ORTHO05D006471 1.4e-66 256.9 180 65.6
Thecc.10G068300 Theobroma cacao HOM05D005240 ORTHO05D006471 1.8e-66 256.5 191 63.9
Psat6g186000 Pisum sativum HOM05D005240 ORTHO05D006471 5.4e-66 255.0 185 64.9
Thecc.10G068200 Theobroma cacao HOM05D005240 ORTHO05D006471 9.2e-66 254.2 183 65.0
QL08p056831 Quercus lobata HOM05D005240 ORTHO05D006471 2.7e-65 252.7 191 63.9
GSVIVG01016337001 Vitis vinifera HOM05D005240 ORTHO05D006471 2.7e-65 252.7 183 63.4
Actinidia38251 Actinidia chinensis HOM05D005240 ORTHO05D006471 5.9e-65 251.5 183 66.7
HanXRQChr07g0200441 Helianthus annuus HOM05D005240 ORTHO05D006471 5.9e-65 251.5 182 63.7
Lalb_Chr06g0162141 Lupinus albus HOM05D005240 ORTHO05D006471 5.9e-65 251.5 180 63.9
Medtr1g095890 Medicago truncatula HOM05D005240 ORTHO05D006471 5.9e-65 251.5 186 66.1
arahy.Tifrunner.gnm1.ann1.D7L05R Arachis hypogaea HOM05D005240 ORTHO05D006471 7.8e-65 251.1 185 62.7
Duzib114G0729 Durio zibethinus HOM05D005240 ORTHO05D006471 7.8e-65 251.1 183 64.5
Hund19334 Selenicereus undatus HOM05D005240 ORTHO05D006471 7.8e-65 251.1 181 66.9
CSS0026127 Camellia sinensis var. sinensis HOM05D005240 ORTHO05D006471 1.0e-64 250.8 175 66.9
Aqoxy4G03197 Aquilegia oxysepala HOM05D005240 ORTHO05D006471 1.7e-64 250.0 180 66.1
Atru.chr12.634 Acer truncatum HOM05D005240 ORTHO05D006471 2.3e-64 249.6 193 62.2
TAR636G2864 Trochodendron aralioides HOM05D005240 ORTHO05D006471 3.9e-64 248.8 186 63.4
Duzib128G0461 Durio zibethinus HOM05D005240 ORTHO05D006471 8.6e-64 247.7 192 62.0
TWI38G0703 Tripterygium wilfordii HOM05D005240 ORTHO05D006471 1.9e-63 246.5 180 65.6
Glyma.10G213900 Glycine max HOM05D005240 ORTHO05D006471 2.5e-63 246.1 180 63.9
DCAR_015276 Daucus carota HOM05D005240 ORTHO05D006471 3.3e-63 245.7 181 64.1
FvH4_7g20150 Fragaria vesca HOM05D005240 ORTHO05D006471 3.3e-63 245.7 179 64.8
FAN06G0525 Fragaria x ananassa HOM05D005240 ORTHO05D006471 3.3e-63 245.7 179 64.8
Glyma.10G214000 Glycine max HOM05D005240 ORTHO05D006471 3.3e-63 245.7 180 63.9
Zm00001eb148920 Zea mays HOM05D005240 ORTHO05D006471 5.6e-63 245.0 181 65.7
FAN03G2612 Fragaria x ananassa HOM05D005240 ORTHO05D006471 7.3e-63 244.6 179 64.2
Lsat_1_v5_gn_2_115080 Lactuca sativa HOM05D005240 ORTHO05D006471 7.3e-63 244.6 182 63.2
PSO210G2142 Papaver somniferum HOM05D005240 ORTHO05D006471 9.5e-63 244.2 187 63.6
Phvul.007G091800 Phaseolus vulgaris HOM05D005240 ORTHO05D006471 2.1e-62 243.0 185 62.2
VMungo0720G3076 Vigna mungo HOM05D005240 ORTHO05D006471 2.1e-62 243.0 185 62.2
FAN10G3611 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.8e-62 242.7 179 64.2
CANSAT56G2007 Cannabis sativa HOM05D005240 ORTHO05D006471 4.7e-62 241.9 184 62.0
Nn2g13000 Nelumbo nucifera HOM05D005240 ORTHO05D006471 4.7e-62 241.9 185 62.7
Ca_10594_v3 Cicer arietinum L. HOM05D005240 ORTHO05D006471 6.2e-62 241.5 183 63.9
Eucgr.J01124 Eucalyptus grandis HOM05D005240 ORTHO05D006471 8.0e-62 241.1 180 63.9
Ciclev10032844m.g Citrus clementina HOM05D005240 ORTHO05D006471 1.4e-61 240.4 166 68.1
Sabra10G0168200 Salix brachista HOM05D005240 ORTHO05D006471 1.8e-61 240.0 182 63.7
CANSAT56G3849 Cannabis sativa HOM05D005240 ORTHO05D006471 2.3e-61 239.6 187 59.9
Prupe.2G218200 Prunus persica HOM05D005240 ORTHO05D006471 2.3e-61 239.6 190 61.1
ECA238G0657 Erigeron canadensis HOM05D005240 ORTHO05D006471 5.2e-61 238.4 176 63.6
Ah.16g108220 Amaranthus hybridus HOM05D005240 ORTHO05D006471 6.8e-61 238.0 192 59.4
ECA238G3142 Erigeron canadensis HOM05D005240 ORTHO05D006471 8.9e-61 237.7 182 61.0
SalBow3G0637 Salvia bowleyana HOM05D005240 ORTHO05D006471 1.2e-60 237.3 172 66.9
Potri.010G217500 Populus trichocarpa HOM05D005240 ORTHO05D006471 1.5e-60 236.9 182 62.6
CAN.G492.51 Capsicum annuum HOM05D005240 ORTHO05D006471 7.5e-60 234.6 164 67.7
Medtr1g095900 Medicago truncatula HOM05D005240 ORTHO05D006471 1.7e-59 233.4 184 61.4
DCAR_019135 Daucus carota HOM05D005240 ORTHO05D006471 2.2e-59 233.0 196 60.2
Aa31LG7G14960 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.1e-58 230.7 167 69.5
COL.COLO4_23732 Corchorus olitorius HOM05D005240 ORTHO05D006471 1.4e-58 230.3 177 63.8
SGA_v2.0_scaffold122G33245 Striga asiatica HOM05D005240 ORTHO05D006471 1.4e-58 230.3 165 67.3
Aa31LG7G14930 Aethionema arabicum HOM05D005240 ORTHO05D006471 1.9e-58 229.9 166 69.9
vmacro17506 Vaccinium macrocarpon HOM05D005240 ORTHO05D006471 1.9e-58 229.9 183 61.2
Pp3c27_2400 Physcomitrium patens HOM05D005240 ORTHO05D006471 2.4e-58 229.6 207 54.1
Rhsim10G0162300 Rhododendron simsii HOM05D005240 ORTHO05D006471 7.0e-58 228.0 159 67.3
PSO170G1537 Papaver somniferum HOM05D005240 ORTHO05D006471 9.2e-58 227.6 177 62.7
CsaV3_7G024930 Cucumis sativus L. HOM05D005240 ORTHO05D006471 1.2e-57 227.3 187 58.3
AUR62020787 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.6e-57 226.9 191 57.6
Os01g0833200 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 2.0e-57 226.5 181 64.1
PSO210G3376 Papaver somniferum HOM05D005240 ORTHO05D006471 2.7e-57 226.1 180 58.9
ATR1159G086 Amborella trichopoda HOM05D005240 ORTHO05D006471 6.0e-57 224.9 192 56.2
MBI16_g46203_MAGBIO Magnolia biondii HOM05D005240 ORTHO05D006471 1.7e-56 223.4 202 56.4
HPP92_007585 Vanilla planifolia HOM05D005240 ORTHO05D006471 2.3e-56 223.0 175 60.6
AagrBONN_evm.TU.Sc2ySwM_117.2297 Anthoceros agrestis HOM05D005240 ORTHO05D006471 8.6e-56 221.1 179 59.2
AUR62043640 Chenopodium quinoa HOM05D005240 ORTHO05D006471 1.1e-55 220.7 182 61.0
MELO3C023691.2 Cucumis melo HOM05D005240 ORTHO05D006471 3.3e-55 219.2 182 58.2
Sed0009768 Sechium edule HOM05D005240 ORTHO05D006471 2.1e-54 216.5 182 56.6
CDE07G1884 Ceratophyllum demersum HOM05D005240 ORTHO05D006471 3.6e-54 215.7 179 59.8
Mapoly0113s0026 Marchantia polymorpha HOM05D005240 ORTHO05D006471 4.0e-53 212.2 185 55.7
Sc09g0006770 Simmondsia chinensis HOM05D005240 ORTHO05D006471 5.4e-50 201.8 148 63.5
PSO210G2334 Papaver somniferum HOM05D005240 ORTHO05D006471 6.0e-49 198.4 159 61.0
Lj8C95T7 Lonicera japonica HOM05D005240 ORTHO05D006471 3.0e-48 196.1 133 68.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 1.9e-47 193.4 198 49.5
TPR.G10956 Trifolium pratense HOM05D005240 ORTHO05D006471 2.8e-46 189.5 131 65.6
Dinv31345 Davidia involucrata HOM05D005240 ORTHO05D006471 4.0e-45 185.7 135 63.0
Sed0007370 Sechium edule HOM05D005240 ORTHO05D006471 5.2e-45 185.3 185 49.2
Haze_16935 Corylus avellana HOM05D005240 ORTHO05D006471 3.4e-44 182.6 190 52.6
SMO330G0010 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.4e-44 182.6 165 53.3
SMO330G0030 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.2e-43 179.9 170 51.2
SMO147G0062 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.9e-43 179.5 168 50.0
CARHR130090 Cardamine hirsuta HOM05D005240 ORTHO05D006471 6.4e-43 178.3 115 76.5
TPR.G15475 Trifolium pratense HOM05D005240 ORTHO05D006471 6.4e-43 178.3 133 60.2
SMO330G0038 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.4e-42 176.4 152 54.6
SMO147G0059 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 3.9e-40 169.1 164 49.4
Oeu057235.1 Olea europaea HOM05D005240 ORTHO05D006471 4.3e-39 165.6 112 66.1
SMO257G0002 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 8.1e-38 161.4 136 54.4
SMO330G0050 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.7e-35 153.7 125 56.8
MCO11G764 Micromonas commoda HOM05D005240 ORTHO05D006471 2.9e-35 152.9 190 43.7
ClCG09G009820 Citrullus lanatus HOM05D005240 ORTHO05D006471 6.4e-35 151.8 180 45.6
Cre08.g378650 Chlamydomonas reinhardtii HOM05D005240 ORTHO05D006471 1.2e-33 147.5 190 41.6
unitig_0.g188 Utricularia gibba HOM05D005240 ORTHO05D006471 3.0e-32 142.9 102 64.7
SMO330G0006 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 6.6e-32 141.7 170 44.7
arahy.Tifrunner.gnm1.ann1.ZWA97R Arachis hypogaea HOM05D005240 ORTHO05D006471 1.5e-31 140.6 126 55.6
arahy.Tifrunner.gnm1.ann1.65Y6VJ Arachis hypogaea HOM05D005240 ORTHO05D006471 3.6e-30 136.0 185 42.2
PRCOL_00006731 Prasinoderma coloniale HOM05D005240 ORTHO05D006471 6.9e-29 131.7 188 40.4
FAN01G3056 Fragaria x ananassa HOM05D005240 ORTHO05D006471 2.4e-26 123.2 99 59.6
SMO147G0342 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 2.7e-17 93.2 96 42.7
Nitab4.5_0011688g0030 Nicotiana tabacum HOM05D005240 ORTHO05D006471 1.5e-15 87.4 118 40.7
CAN.G1302.2 Capsicum annuum HOM05D005240 ORTHO05D115732 4.9e-11 72.4 110 39.1
Lj8C95T8 Lonicera japonica HOM05D005240 ORTHO05D006471 9.3e-10 68.2 49 67.3
Cpa.g.sc53.24 Carica papaya HOM05D005240 ORTHO05D006471 6.0e-09 65.5 50 62.0
Os01g0833150 Oryza sativa ssp. japonica HOM05D005240 ORTHO05D006471 1.9e-07 60.5 58 55.2
SMO330G0037 Selaginella moellendorffii HOM05D005240 ORTHO05D006471 1.9e-07 60.5 53 50.9
TPR.G970 Trifolium pratense HOM05D005240 ORTHO05D006471 1.9e-07 60.5 48 64.6
TPR.G38077 Trifolium pratense HOM05D005240 ORTHO05D006471 7.4e-07 58.5 48 60.4


User provided reference genes

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