Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07662 Brassica carinata HOM05D005113 ORTHO05D006045 1.4e-36 156.0 91 100.0
BolC4t27961H Brassica oleracea HOM05D005113 ORTHO05D006045 4.0e-36 154.5 91 98.9
C04p64840 Brassica napus HOM05D005113 ORTHO05D006045 3.8e-34 147.9 94 93.6
A04p27340 Brassica napus HOM05D005113 ORTHO05D006045 1.3e-29 132.9 87 81.6
BraA04t18232Z Brassica rapa HOM05D005113 ORTHO05D006045 1.1e-28 129.8 87 85.1
BcaB06g28884 Brassica carinata HOM05D005113 ORTHO05D006045 3.2e-25 118.2 89 82.0
BcaB01g03875 Brassica carinata HOM05D005113 ORTHO05D006045 9.7e-22 106.7 86 81.4
A03p19780 Brassica napus HOM05D005113 ORTHO05D006045 4.5e-19 97.8 86 76.7
C03p23070 Brassica napus HOM05D005113 ORTHO05D006045 4.5e-19 97.8 86 76.7
BraA03t11230Z Brassica rapa HOM05D005113 ORTHO05D006045 4.5e-19 97.8 86 76.7
BcaC01g05698 Brassica carinata HOM05D005113 ORTHO05D006045 1.3e-18 96.3 86 75.6
BolC3t14709H Brassica oleracea HOM05D005113 ORTHO05D006045 1.3e-18 96.3 86 75.6
AL4G31960 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.9e-18 95.1 90 63.3
CARHR130110 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.0e-15 86.7 86 64.0
Carub.0004s1761 Capsella rubella HOM05D005113 ORTHO05D006045 2.3e-15 85.5 79 64.6
Aa31LG10G7390 Aethionema arabicum HOM05D005113 ORTHO05D006045 3.9e-15 84.7 83 57.8
AT2G35850 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 1.1e-14 83.2 84 69.0
Thhalv10010863m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 1.5e-14 82.8 83 59.0
Sp5g09930 Schrenkiella parvula HOM05D005113 ORTHO05D006045 2.5e-14 82.0 83 57.8
BcaB02g08576 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
BcaC02g09265 Brassica carinata HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
A04p07080 Brassica napus HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
C04p40660 Brassica napus HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
BolC4t25648H Brassica oleracea HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
BraA04t16405Z Brassica rapa HOM05D005113 ORTHO05D006045 3.3e-14 81.6 83 57.8
CARHR162120 Cardamine hirsuta HOM05D005113 ORTHO05D006045 1.7e-13 79.3 88 54.5
AT3G52360 Arabidopsis thaliana HOM05D005113 ORTHO05D006045 2.2e-13 79.0 76 57.9
AL5G33010 Arabidopsis lyrata HOM05D005113 ORTHO05D006045 2.8e-13 78.6 76 57.9
BcaB01g00380 Brassica carinata HOM05D005113 ORTHO05D006045 4.8e-13 77.8 82 54.9
BcaC07g39601 Brassica carinata HOM05D005113 ORTHO05D006045 4.8e-13 77.8 82 54.9
C08p27550 Brassica napus HOM05D005113 ORTHO05D006045 4.8e-13 77.8 82 54.9
BolC8t50376H Brassica oleracea HOM05D005113 ORTHO05D006045 4.8e-13 77.8 82 54.9
A09p45370 Brassica napus HOM05D005113 ORTHO05D006045 1.1e-12 76.6 76 55.3
BraA09t40001Z Brassica rapa HOM05D005113 ORTHO05D006045 1.1e-12 76.6 76 55.3
Carub.0005s1871 Capsella rubella HOM05D005113 ORTHO05D006045 1.4e-12 76.3 81 56.8
Cpa.g.sc222.18 Carica papaya HOM05D005113 ORTHO05D006045 9.1e-12 73.6 75 52.0
THA.LOC104803378 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 1.2e-11 73.2 78 52.6
THA.LOC104803375 Tarenaya hassleriana HOM05D005113 ORTHO05D006045 5.9e-11 70.9 90 50.0
Dinv25078 Davidia involucrata HOM05D005113 ORTHO05D006045 7.7e-11 70.5 71 56.3
PSO339G6075 Papaver somniferum HOM05D005113 ORTHO05D006045 7.7e-11 70.5 78 52.6
Ciclev10013205m.g Citrus clementina HOM05D005113 ORTHO05D006045 1.0e-10 70.1 85 48.2
Sp4g18110 Schrenkiella parvula HOM05D005113 ORTHO05D006045 1.0e-10 70.1 44 84.1
Dinv11892 Davidia involucrata HOM05D005113 ORTHO05D006045 1.3e-10 69.7 78 53.8
Thhalv10017703m.g Eutrema salsugineum HOM05D005113 ORTHO05D006045 2.9e-10 68.6 45 80.0
PSO384G2214 Papaver somniferum HOM05D005113 ORTHO05D006045 3.8e-10 68.2 78 51.3
TWI74G1336 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 6.5e-10 67.4 86 50.0
TWI77G0719 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 8.5e-10 67.0 76 51.3
Sabra16G0067600 Salix brachista HOM05D005113 ORTHO05D006045 1.1e-09 66.6 71 52.1
Actinidia07952 Actinidia chinensis HOM05D005113 ORTHO05D006045 1.4e-09 66.2 79 50.6
Thecc.05G109700 Theobroma cacao HOM05D005113 ORTHO05D006045 1.4e-09 66.2 81 49.4
Aqoxy1G00593 Aquilegia oxysepala HOM05D005113 ORTHO05D006045 3.2e-09 65.1 78 52.6
CSS0024187 Camellia sinensis var. sinensis HOM05D005113 ORTHO05D006045 3.2e-09 65.1 79 49.4
Duzib093G2033 Durio zibethinus HOM05D005113 ORTHO05D006045 3.2e-09 65.1 71 52.1
TAR623G1290 Trochodendron aralioides HOM05D005113 ORTHO05D006045 3.2e-09 65.1 80 50.0
Atru.chr8.1293 Acer truncatum HOM05D005113 ORTHO05D006045 4.2e-09 64.7 75 49.3
Gorai.007G363100 Gossypium raimondii HOM05D005113 ORTHO05D006045 4.2e-09 64.7 79 51.9
Duzib106G0847 Durio zibethinus HOM05D005113 ORTHO05D006045 5.5e-09 64.3 71 49.3
Nn1g06541 Nelumbo nucifera HOM05D005113 ORTHO05D006045 5.5e-09 64.3 74 47.3
Potri.006G200000 Populus trichocarpa HOM05D005113 ORTHO05D006045 5.5e-09 64.3 73 52.1
Potri.016G066200 Populus trichocarpa HOM05D005113 ORTHO05D006045 9.4e-09 63.5 77 46.8
Sabra06G0153800 Salix brachista HOM05D005113 ORTHO05D006045 9.4e-09 63.5 73 49.3
GSVIVG01022551001 Vitis vinifera HOM05D005113 ORTHO05D006045 9.4e-09 63.5 85 47.1
Gohir.A11G315200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.2e-08 63.2 79 50.6
TWI53G1462 Tripterygium wilfordii HOM05D005113 ORTHO05D006045 1.2e-08 63.2 86 46.5
CiPaw.10G020600 Carya illinoinensis HOM05D005113 ORTHO05D006045 2.1e-08 62.4 77 50.6
MBI05_g03323_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 2.7e-08 62.0 74 47.3
TAR369G1050 Trochodendron aralioides HOM05D005113 ORTHO05D006045 2.7e-08 62.0 83 47.0
Actinidia06192 Actinidia chinensis HOM05D005113 ORTHO05D006045 3.6e-08 61.6 79 48.1
Nn2g14410 Nelumbo nucifera HOM05D005113 ORTHO05D006045 3.6e-08 61.6 76 48.7
QL07p026499 Quercus lobata HOM05D005113 ORTHO05D006045 4.7e-08 61.2 78 48.7
Gohir.D11G332200 Gossypium hirsutum HOM05D005113 ORTHO05D006045 7.9e-08 60.5 79 49.4
CANSAT64G1258 Cannabis sativa HOM05D005113 ORTHO05D006045 1.0e-07 60.1 89 41.6
PSO384G1750 Papaver somniferum HOM05D005113 ORTHO05D006045 1.0e-07 60.1 99 40.4
Gohir.D04G093000 Gossypium hirsutum HOM05D005113 ORTHO05D006045 1.8e-07 59.3 75 42.7
TAR633G2365 Trochodendron aralioides HOM05D005113 ORTHO05D006045 1.8e-07 59.3 77 49.4
BraA09t40003Z Brassica rapa HOM05D005113 ORTHO05D006045 2.3e-07 58.9 86 46.5
Haze_20118 Corylus avellana HOM05D005113 ORTHO05D006045 3.0e-07 58.5 80 48.8
MD14G1044100 Malus domestica HOM05D005113 ORTHO05D006045 3.9e-07 58.2 85 44.7
Oeu020160.1 Olea europaea HOM05D005113 ORTHO05D006045 2.6e-06 55.5 87 43.7
Prupe.7G090200 Prunus persica HOM05D005113 ORTHO05D006045 2.6e-06 55.5 77 48.1
CiPaw.09G023700 Carya illinoinensis HOM05D005113 ORTHO05D006045 3.3e-06 55.1 90 43.3
Haze_07788 Corylus avellana HOM05D005113 ORTHO05D006045 3.3e-06 55.1 78 46.2
MBI11_g26202_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.3e-06 55.1 80 42.5
MBI11_g46321_MAGBIO Magnolia biondii HOM05D005113 ORTHO05D006045 3.3e-06 55.1 80 42.5
FAN05G0955 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.4e-06 54.7 98 41.8
FAN05G3212 Fragaria x ananassa HOM05D005113 ORTHO05D006045 4.4e-06 54.7 98 41.8
Manes.08G036800 Manihot esculenta HOM05D005113 ORTHO05D006045 5.7e-06 54.3 71 42.3
FvH4_6g20940 Fragaria vesca HOM05D005113 ORTHO05D006045 7.4e-06 53.9 91 40.7
FAN09G1514 Fragaria x ananassa HOM05D005113 ORTHO05D006045 7.4e-06 53.9 98 41.8
FAN14G1795 Fragaria x ananassa HOM05D005113 ORTHO05D006045 7.4e-06 53.9 91 40.7
MD12G1045200 Malus domestica HOM05D005113 ORTHO05D006045 7.4e-06 53.9 78 44.9
RcHm_v2.0_Chr3g0477281 Rosa chinensis HOM05D005113 ORTHO05D006045 7.4e-06 53.9 98 39.8


User provided reference genes

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