Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07647 Brassica carinata HOM05D000361 ORTHO05D017539 3.1e-34 147.9 75 100.0
BcaB01g05126 Brassica carinata HOM05D000361 ORTHO05D017539 6.9e-34 146.7 75 98.7
C05p46920 Brassica napus HOM05D000267 ORTHO05D017539 7.7e-17 90.1 77 63.6
BolC5t33422H Brassica oleracea HOM05D000267 ORTHO05D017539 7.7e-17 90.1 77 63.6
BcaC05g28221 Brassica carinata HOM05D000361 ORTHO05D017539 1.0e-16 89.7 69 71.0
BcaC05g28587 Brassica carinata HOM05D000267 ORTHO05D017539 1.0e-16 89.7 71 69.0
Aa31LG9G8530 Aethionema arabicum HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
AL8G14990 Arabidopsis lyrata HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
AT5G44635 Arabidopsis thaliana HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
BcaC03g16683 Brassica carinata HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
BcaC06g31601 Brassica carinata HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
A06p47040 Brassica napus HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
C02p45220 Brassica napus HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
BolC2t10553H Brassica oleracea HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
BraA06t27577Z Brassica rapa HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
Carub.0008s0363 Capsella rubella HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
CARHR178260 Cardamine hirsuta HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
Thhalv10000779m.g Eutrema salsugineum HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
Os05g0235800 Oryza sativa ssp. japonica HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
Sp2g09450 Schrenkiella parvula HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
Zm00001eb284360 Zea mays HOM05D000361 ORTHO05D008294 3.0e-13 78.2 71 66.2
Zm00001eb350340 Zea mays HOM05D000361 ORTHO05D008294 4.0e-13 77.8 71 66.2
Lalb_Chr18g0051851 Lupinus albus HOM05D000361 ORTHO05D008294 6.8e-13 77.0 71 64.8
MD05G1242400 Malus domestica HOM05D000361 ORTHO05D008294 6.8e-13 77.0 71 64.8
MD10G1224200 Malus domestica HOM05D000361 ORTHO05D008294 6.8e-13 77.0 71 64.8
Manes.16G060200 Manihot esculenta HOM05D000361 ORTHO05D008294 6.8e-13 77.0 71 64.8
QL11p010760 Quercus lobata HOM05D000361 ORTHO05D008294 6.8e-13 77.0 71 64.8
VMungo1309G2334 Vigna mungo HOM05D000361 ORTHO05D008294 6.8e-13 77.0 71 64.8
AUR62040986 Chenopodium quinoa HOM05D000361 ORTHO05D008294 1.2e-12 76.3 71 63.4
BcaC06g34528 Brassica carinata HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 64.8
C07p27530 Brassica napus HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 64.8
BolC7t43284H Brassica oleracea HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 64.8
CAN.G809.9 Capsicum annuum HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 62.0
AUR62042103 Chenopodium quinoa HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 62.0
MELO3C006995.2 Cucumis melo HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
CsaV3_6G053180 Cucumis sativus L. HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Eucgr.D00002 Eucalyptus grandis HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Glyma.09G047300 Glycine max HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Glyma.15G154900 Glycine max HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Lj6g0011881 Lotus japonicus HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Phvul.009G245600 Phaseolus vulgaris HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Sed0009371 Sechium edule HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Sc24g0002810 Simmondsia chinensis HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
Solyc02g082180.3 Solanum lycopersicum HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 62.0
Sopen02g026840 Solanum pennellii HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 62.0
THA.LOC104811945 Tarenaya hassleriana HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
HPP92_000506 Vanilla planifolia HOM05D000361 ORTHO05D008294 1.5e-12 75.9 71 63.4
arahy.Tifrunner.gnm1.ann1.76Y6MV Arachis hypogaea HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 63.4
arahy.Tifrunner.gnm1.ann1.QR0DXW Arachis hypogaea HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 63.4
CANSAT35G1399 Cannabis sativa HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
Cpa.g.sc30.68 Carica papaya HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
COL.COLO4_25023 Corchorus olitorius HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
Duzib132G1205 Durio zibethinus HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
Gohir.A03G218100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
Gohir.D02G240100 Gossypium hirsutum HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
Gorai.005G268500 Gossypium raimondii HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
Prupe.4G121000 Prunus persica HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 63.4
Thecc.02G000800 Theobroma cacao HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
TWI63G1117 Tripterygium wilfordii HOM05D000361 ORTHO05D008294 2.0e-12 75.5 71 62.0
EL10Ac7g17302 Beta vulgaris HOM05D000361 ORTHO05D008294 2.6e-12 75.1 71 62.0
CiPaw.09G140700 Carya illinoinensis HOM05D000361 ORTHO05D008294 2.6e-12 75.1 71 62.0
Haze_05186 Corylus avellana HOM05D000361 ORTHO05D008294 2.6e-12 75.1 70 64.3
FvH4_3g13360 Fragaria vesca HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
FAN11G3268 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
FAN16G0385 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
FAN21G0569 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
FAN25G0043 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
FAN25G0195 Fragaria x ananassa HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
Nitab4.5_0001815g0090 Nicotiana tabacum HOM05D000361 ORTHO05D008294 3.4e-12 74.7 71 60.6
Nitab4.5_0007687g0010 Nicotiana tabacum HOM05D000361 ORTHO05D008294 3.4e-12 74.7 71 60.6
Peaxi162Scf00036g00321 Petunia axillaris HOM05D000361 ORTHO05D008294 3.4e-12 74.7 71 60.6
PGR044G0817 Punica granatum HOM05D000361 ORTHO05D008294 3.4e-12 74.7 71 60.6
RcHm_v2.0_Chr5g0022071 Rosa chinensis HOM05D000361 ORTHO05D008294 3.4e-12 74.7 70 62.9
SHI08119 Sapria himalayana HOM05D000361 ORTHO05D008294 3.4e-12 74.7 71 63.4
GSVIVG01003253001 Vitis vinifera HOM05D000361 ORTHO05D008294 3.4e-12 74.7 71 62.0
ATR0737G139 Amborella trichopoda HOM05D000361 ORTHO05D008294 4.4e-12 74.3 70 62.9
SalBow6G3398 Salvia bowleyana HOM05D000361 ORTHO05D008294 4.4e-12 74.3 71 62.0
SalBow6G5453 Salvia bowleyana HOM05D000361 ORTHO05D008294 4.4e-12 74.3 71 62.0
Hund20134 Selenicereus undatus HOM05D000361 ORTHO05D008294 4.4e-12 74.3 71 62.0
Cfa001165 Carpinus fangiana HOM05D000361 ORTHO05D008294 5.7e-12 73.9 70 62.9
Medtr2g437540 Medicago truncatula HOM05D000361 ORTHO05D008294 5.7e-12 73.9 71 62.0
Ca_17753_v3 Cicer arietinum L. HOM05D000361 ORTHO05D008294 7.5e-12 73.6 71 62.0
Ciclev10014269m.g Citrus clementina HOM05D000361 ORTHO05D008294 7.5e-12 73.6 70 62.9
Lj1C1152G4 Lonicera japonica HOM05D000361 ORTHO05D008294 7.5e-12 73.6 71 62.0
MBI06_g26561_MAGBIO Magnolia biondii HOM05D000361 ORTHO05D008294 7.5e-12 73.6 71 62.0
Medtr8g090000 Medicago truncatula HOM05D000361 ORTHO05D008294 7.5e-12 73.6 71 62.0
TPR.G6256 Trifolium pratense HOM05D000361 ORTHO05D008294 7.5e-12 73.6 71 62.0
MSTRG.13294 Avicennia marina HOM05D000361 ORTHO05D008294 9.7e-12 73.2 71 60.6
RcHm_v2.0_Chr7g0214621 Rosa chinensis HOM05D000361 ORTHO05D008294 9.7e-12 73.2 70 62.9
CSS0044464 Camellia sinensis var. sinensis HOM05D000361 ORTHO05D008294 1.3e-11 72.8 71 60.6
Cc09_g04600 Coffea canephora HOM05D000361 ORTHO05D008294 1.3e-11 72.8 71 60.6
Migut.H01418 Erythranthe guttata HOM05D000361 ORTHO05D008294 1.3e-11 72.8 71 60.6
Nn1g09868 Nelumbo nucifera HOM05D000361 ORTHO05D008294 1.3e-11 72.8 71 60.6
CBR_g12702 Chara braunii HOM05D000361 ORTHO05D008294 1.7e-11 72.4 70 61.4
Dinv07937 Davidia involucrata HOM05D000361 ORTHO05D008294 1.7e-11 72.4 71 60.6
Dinv18416 Davidia involucrata HOM05D000361 ORTHO05D008294 1.7e-11 72.4 71 60.6
Potri.001G074000 Populus trichocarpa HOM05D000361 ORTHO05D008294 1.7e-11 72.4 70 61.4
Sabra01G0052300 Salix brachista HOM05D000361 ORTHO05D008294 1.7e-11 72.4 70 61.4
SGA_v2.0_scaffold341G49368 Striga asiatica HOM05D000361 ORTHO05D008294 1.7e-11 72.4 71 60.6
PSO541G2719 Papaver somniferum HOM05D000361 ORTHO05D008294 2.2e-11 72.0 71 59.2
PSO541G6368 Papaver somniferum HOM05D000361 ORTHO05D008294 2.2e-11 72.0 71 59.2
PSO675G8445 Papaver somniferum HOM05D000361 ORTHO05D008294 2.2e-11 72.0 71 59.2
HanXRQChr07g0187741 Helianthus annuus HOM05D000361 ORTHO05D008294 4.8e-11 70.9 71 59.2
Rhsim13G0136200 Rhododendron simsii HOM05D000361 ORTHO05D008294 4.8e-11 70.9 70 60.0
vmacro03573 Vaccinium macrocarpon HOM05D000361 ORTHO05D008294 4.8e-11 70.9 70 60.0
TAR627G0013 Trochodendron aralioides HOM05D000361 ORTHO05D008294 8.3e-11 70.1 69 60.9
SEGI_18737 Sequoiadendron giganteum HOM05D000361 ORTHO05D008294 1.1e-10 69.7 70 58.6
unitig_37.g13054 Utricularia gibba HOM05D000361 ORTHO05D008294 1.1e-10 69.7 71 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1744 Anthoceros agrestis HOM05D000361 ORTHO05D008294 1.4e-10 69.3 70 58.6
Mapoly0119s0016 Marchantia polymorpha HOM05D000361 ORTHO05D008294 1.4e-10 69.3 70 58.6
Pp3c23_390 Physcomitrium patens HOM05D000361 ORTHO05D008294 1.4e-10 69.3 70 58.6
Aqoxy1G01354 Aquilegia oxysepala HOM05D000361 ORTHO05D008294 3.1e-10 68.2 71 57.7
Lsat_1_v5_gn_9_100181 Lactuca sativa HOM05D000361 ORTHO05D008294 3.1e-10 68.2 71 59.2
MCO01G695 Micromonas commoda HOM05D000361 ORTHO05D008294 3.1e-10 68.2 70 58.6
ECA240G0581 Erigeron canadensis HOM05D000361 ORTHO05D008294 4.1e-10 67.8 71 57.7
PRCOL_00003449 Prasinoderma coloniale HOM05D000361 ORTHO05D008294 4.1e-10 67.8 70 57.1
SMO364G0539 Selaginella moellendorffii HOM05D000361 ORTHO05D008294 7.0e-10 67.0 70 55.7
BcaB07g30511 Brassica carinata HOM05D000361 ORTHO05D016785 9.1e-10 66.6 65 63.1
BcaB07g30513 Brassica carinata HOM05D000361 ORTHO05D016785 9.1e-10 66.6 65 63.1
CDE10G0589 Ceratophyllum demersum HOM05D000361 ORTHO05D008294 3.5e-09 64.7 62 62.9
Cre03.g178650 Chlamydomonas reinhardtii HOM05D000361 ORTHO05D008294 4.5e-09 64.3 70 52.9
ClCG01G025960 Citrullus lanatus HOM05D000361 ORTHO05D008294 4.5e-09 64.3 104 45.2
Oeu039911.1 Olea europaea HOM05D000361 ORTHO05D008294 4.5e-09 64.3 68 57.4
PGSC0003DMG400013633 Solanum tuberosum HOM05D000361 ORTHO05D008294 1.3e-08 62.8 62 59.7
BcaB07g32760 Brassica carinata HOM05D000267 ORTHO05D008926 8.5e-08 60.1 52 63.5
CAN.G1862.3 Capsicum annuum HOM05D000361 ORTHO05D000137 2.7e-06 55.1 62 54.8
DCAR_003731 Daucus carota HOM05D000361 ORTHO05D008294 2.7e-06 55.1 62 54.8
BcaC08g45127 Brassica carinata HOM05D000267 ORTHO05D017539 8.0e-06 53.5 48 62.5


User provided reference genes

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