Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 3.0e-41 171.4 85 100.0
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 1.1e-30 136.3 103 75.7
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 5.3e-30 134.0 103 74.8
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 1.5e-29 132.5 102 74.5
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 2.0e-29 132.1 103 72.8
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 2.0e-29 132.1 103 72.8
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 2.2e-28 128.6 103 71.8
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 2.2e-28 128.6 103 71.8
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 8.4e-28 126.7 103 69.9
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 8.4e-28 126.7 103 69.9
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 1.1e-27 126.3 103 69.9
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 1.1e-27 126.3 103 70.9
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 2.1e-26 122.1 103 68.0
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 9.6e-24 113.2 103 61.2
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 4.8e-23 110.9 103 58.3
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 5.8e-21 104.0 101 55.4
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 5.8e-21 104.0 101 55.4
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 2.9e-20 101.7 102 54.9
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 2.9e-20 101.7 103 55.3
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 4.9e-20 100.9 101 55.4
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 4.9e-20 100.9 102 54.9
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 4.9e-20 100.9 102 54.9
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 6.5e-20 100.5 103 54.4
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 8.4e-20 100.1 103 54.4
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 1.1e-19 99.8 103 54.4
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 1.1e-19 99.8 103 54.4
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 1.1e-19 99.8 103 54.4
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.9e-19 99.0 103 53.4
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 2.5e-19 98.6 103 53.4
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 3.2e-19 98.2 103 54.4
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 3.2e-19 98.2 103 54.4
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 3.2e-19 98.2 103 52.4
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 4.2e-19 97.8 103 52.4
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 4.2e-19 97.8 103 53.4
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 5.5e-19 97.4 103 52.4
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 5.5e-19 97.4 103 53.4
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 7.1e-19 97.1 103 50.5
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 7.1e-19 97.1 98 55.1
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 7.1e-19 97.1 103 53.4
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 9.3e-19 96.7 103 52.4
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 9.3e-19 96.7 103 52.4
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 9.3e-19 96.7 103 52.4
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 1.2e-18 96.3 100 54.0
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 1.2e-18 96.3 102 52.9
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 1.2e-18 96.3 100 51.0
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.2e-18 96.3 103 51.5
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 1.6e-18 95.9 103 49.5
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 1.6e-18 95.9 103 52.4
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 2.1e-18 95.5 103 50.5
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 2.7e-18 95.1 103 52.4
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 2.7e-18 95.1 103 52.4
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 2.7e-18 95.1 103 53.4
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 4.6e-18 94.4 102 52.0
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 6.0e-18 94.0 103 52.4
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 1.0e-17 93.2 103 49.5
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 1.3e-17 92.8 103 49.5
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 1.8e-17 92.4 103 48.5
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 2.3e-17 92.0 103 50.5
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 2.3e-17 92.0 103 50.5
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 2.3e-17 92.0 103 51.5
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 2.3e-17 92.0 103 48.5
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 3.0e-17 91.7 103 48.5
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 3.0e-17 91.7 103 48.5
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 3.0e-17 91.7 103 50.5
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 3.0e-17 91.7 104 51.9
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 3.9e-17 91.3 102 52.9
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 6.7e-17 90.5 96 52.1
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 6.7e-17 90.5 103 47.6
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 8.7e-17 90.1 103 47.6
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 1.1e-16 89.7 103 47.6
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 1.1e-16 89.7 103 50.5
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 1.5e-16 89.4 100 51.0
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 1.5e-16 89.4 103 48.5
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 1.9e-16 89.0 109 47.7
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 2.5e-16 88.6 103 47.6
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 2.5e-16 88.6 101 50.5
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 2.5e-16 88.6 101 50.5
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 4.3e-16 87.8 103 47.6
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 4.3e-16 87.8 103 47.6
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 9.7e-16 86.7 103 48.5
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 1.3e-15 86.3 70 61.4
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.3e-15 86.3 103 47.6
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 6.3e-15 84.0 101 45.5
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 6.3e-15 84.0 101 44.6
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 6.3e-15 84.0 101 45.5
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 8.2e-15 83.6 121 45.5
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 1.1e-14 83.2 101 45.5
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 1.1e-14 83.2 101 45.5
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.4e-14 82.8 65 63.1
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 1.8e-14 82.4 77 50.6
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 2.4e-14 82.0 103 46.6
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 2.4e-14 82.0 101 45.5
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 5.3e-14 80.9 104 47.1
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 6.9e-14 80.5 63 60.3
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 2.6e-13 78.6 102 45.1
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 3.4e-13 78.2 65 58.5
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 7.7e-13 77.0 88 46.6
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.0e-12 76.6 65 56.9
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 1.7e-12 75.9 75 50.7
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 2.2e-12 75.5 62 54.8
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.1e-10 68.9 75 46.7
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 1.8e-09 65.9 65 53.8
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 2.3e-09 65.5 79 48.1
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 1.5e-08 62.8 35 74.3
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 2.5e-08 62.0 46 71.7
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 6.3e-07 57.4 88 37.5
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 5.3e-06 54.3 68 48.5
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 9.1e-06 53.5 75 37.3


User provided reference genes

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