Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 2.9e-128 461.8 226 100.0
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 2.5e-127 458.8 226 99.6
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 1.6e-121 439.5 226 96.5
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 1.6e-121 439.5 226 96.5
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 5.0e-120 434.5 226 95.6
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 1.3e-112 409.8 228 89.9
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 2.4e-106 389.0 238 83.6
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 6.0e-105 384.4 237 83.1
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 1.2e-94 350.1 238 79.4
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 5.2e-93 344.7 239 76.2
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 1.9e-90 336.3 263 70.0
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 2.5e-87 325.9 179 92.7
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 9.9e-84 313.9 240 69.2
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 3.5e-81 305.4 231 68.8
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 4.6e-81 305.1 270 63.3
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 6.0e-81 304.7 245 66.5
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 1.0e-80 303.9 244 67.6
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 8.7e-80 300.8 241 67.2
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 8.7e-80 300.8 236 67.4
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 1.5e-79 300.1 235 68.1
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 2.5e-79 299.3 240 66.2
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 4.3e-79 298.5 238 68.9
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 9.6e-79 297.4 235 66.8
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 9.6e-79 297.4 243 66.3
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 2.1e-78 296.2 240 65.4
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 6.2e-78 294.7 203 72.4
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 8.1e-78 294.3 202 71.8
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 8.1e-78 294.3 238 65.1
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 8.1e-78 294.3 238 65.1
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 2.4e-77 292.7 238 65.5
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 4.0e-77 292.0 237 65.0
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 4.0e-77 292.0 238 65.5
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 5.3e-77 291.6 237 65.4
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 9.0e-77 290.8 246 65.4
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 1.5e-76 290.0 245 63.7
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 2.6e-76 289.3 247 61.9
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 7.6e-76 287.7 240 64.2
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 7.6e-76 287.7 260 61.2
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 9.9e-76 287.3 228 67.1
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 9.9e-76 287.3 235 66.8
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 2.9e-75 285.8 242 64.5
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 6.4e-75 284.6 247 65.6
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 6.4e-75 284.6 230 65.7
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 1.1e-74 283.9 235 64.7
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 1.4e-74 283.5 231 68.4
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 1.9e-74 283.1 238 64.3
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 3.2e-74 282.3 243 66.3
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 4.2e-74 282.0 236 64.4
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 5.4e-74 281.6 209 67.0
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 9.3e-74 280.8 237 65.0
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 2.7e-73 279.3 210 66.2
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.6e-73 278.5 199 69.8
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 6.0e-73 278.1 239 61.9
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 6.0e-73 278.1 229 64.6
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 6.0e-73 278.1 229 64.6
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 6.0e-73 278.1 238 63.4
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 6.0e-73 278.1 242 63.6
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 6.0e-73 278.1 210 65.7
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 2.3e-72 276.2 244 62.3
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 3.0e-72 275.8 239 62.8
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 3.9e-72 275.4 241 62.7
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 6.6e-72 274.6 233 64.4
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 6.6e-72 274.6 233 64.4
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 6.6e-72 274.6 198 69.2
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 1.1e-71 273.9 238 62.2
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 1.5e-71 273.5 166 78.3
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 1.5e-71 273.5 197 70.1
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 1.9e-71 273.1 239 60.3
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 3.3e-71 272.3 243 60.9
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 3.3e-71 272.3 243 60.9
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 3.3e-71 272.3 197 69.0
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 4.3e-71 271.9 197 69.0
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 5.6e-71 271.6 288 54.5
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 9.6e-71 270.8 252 61.1
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 1.6e-70 270.0 243 61.3
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 1.6e-70 270.0 205 66.8
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 6.2e-70 268.1 210 65.7
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 6.2e-70 268.1 240 63.3
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 6.2e-70 268.1 188 69.1
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 6.2e-70 268.1 211 63.5
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 1.4e-69 266.9 183 72.1
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 1.8e-69 266.5 245 60.8
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 2.4e-69 266.2 236 59.3
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 9.0e-69 264.2 240 58.3
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 1.5e-68 263.5 160 76.2
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 2.0e-68 263.1 164 77.4
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 3.4e-68 262.3 195 67.2
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 7.6e-68 261.2 241 58.5
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 7.6e-68 261.2 241 58.5
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 2.2e-67 259.6 244 58.6
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 1.1e-66 257.3 244 58.2
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 3.2e-66 255.8 228 59.2
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 1.2e-65 253.8 244 55.7
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 1.3e-64 250.4 210 61.4
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 3.7e-62 242.3 247 53.8
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 6.2e-62 241.5 195 61.5
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 1.4e-61 240.4 194 61.9
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 3.8e-59 232.3 167 68.9
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 4.3e-55 218.8 164 68.3
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 6.3e-54 214.9 198 59.1
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 8.2e-54 214.5 198 55.1
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 4.1e-53 212.2 179 56.4
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 5.8e-52 208.4 240 52.5
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 1.0e-51 207.6 134 75.4
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 1.9e-50 203.4 110 85.5
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 2.1e-49 199.9 181 53.6
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 2.5e-47 193.0 131 71.0
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 7.4e-47 191.4 189 60.8
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 1.6e-46 190.3 185 57.8
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 1.9e-42 176.8 90 91.1
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 3.0e-40 169.5 164 56.7
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 6.7e-32 141.7 108 61.1
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 3.1e-29 132.9 148 54.7
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 2.6e-28 129.8 88 70.5
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 7.7e-28 128.3 114 63.2
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 1.0e-27 127.9 96 70.8
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 8.5e-27 124.8 174 43.7
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 9.1e-21 104.8 86 66.3
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 2.7e-20 103.2 56 87.5
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 7.2e-18 95.1 49 85.7
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 4.0e-16 89.4 38 100.0
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.2e-12 77.8 60 56.7
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 1.5e-07 60.8 34 76.5


User provided reference genes

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