Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07570 Brassica carinata HOM05D006298 ORTHO05D008167 1.7e-30 135.2 61 100.0
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 1.8e-16 88.6 38 100.0
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 1.8e-16 88.6 38 100.0
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 1.8e-16 88.6 38 100.0
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 1.8e-16 88.6 38 100.0
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 1.8e-16 88.6 38 100.0
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 3.4e-15 84.3 38 92.1
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 5.9e-15 83.6 38 92.1
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 1.7e-14 82.0 38 89.5
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 2.2e-14 81.6 38 89.5
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 2.2e-14 81.6 38 89.5
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 2.2e-14 81.6 38 89.5
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 2.2e-14 81.6 38 89.5
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 2.9e-14 81.3 38 86.8
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 3.8e-14 80.9 39 82.1
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 1.9e-13 78.6 38 86.8
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 2.5e-13 78.2 38 81.6
MD12G1110600 Malus domestica HOM05D006298 ORTHO05D008167 3.2e-13 77.8 38 86.8
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 3.2e-13 77.8 38 81.6
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 3.2e-13 77.8 38 81.6
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 81.6
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 4.2e-13 77.4 38 84.2
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 5.5e-13 77.0 38 78.9
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 7.2e-13 76.6 38 78.9
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 7.2e-13 76.6 38 78.9
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 7.2e-13 76.6 38 78.9
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 7.2e-13 76.6 38 78.9
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 9.4e-13 76.3 38 81.6
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 9.4e-13 76.3 38 78.9
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 9.4e-13 76.3 38 81.6
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 9.4e-13 76.3 38 78.9
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 9.4e-13 76.3 38 81.6
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 78.9
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 1.2e-12 75.9 38 81.6
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 1.6e-12 75.5 38 81.6
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 1.6e-12 75.5 38 81.6
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 2.7e-12 74.7 37 78.4
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 2.7e-12 74.7 38 78.9
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 2.7e-12 74.7 38 78.9
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 2.7e-12 74.7 38 78.9
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 2.7e-12 74.7 38 78.9
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 2.7e-12 74.7 38 78.9
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 78.9
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 78.9
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 78.9
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 78.9
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 78.9
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 76.3
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 76.3
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 76.3
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 76.3
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 81.6
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 3.6e-12 74.3 38 76.3
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 4.6e-12 73.9 38 78.9
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 4.6e-12 73.9 38 78.9
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 6.1e-12 73.6 38 76.3
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 6.1e-12 73.6 38 76.3
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 6.1e-12 73.6 38 76.3
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 7.9e-12 73.2 38 76.3
BcaC04g19302 Brassica carinata HOM05D006298 ORTHO05D008167 1.0e-11 72.8 38 84.2
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 1.0e-11 72.8 38 76.3
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 1.0e-11 72.8 38 76.3
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 1.0e-11 72.8 38 76.3
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 1.0e-11 72.8 38 78.9
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 1.8e-11 72.0 38 76.3
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 1.8e-11 72.0 37 75.7
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 3.0e-11 71.2 38 76.3
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 3.0e-11 71.2 38 76.3
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 3.9e-11 70.9 38 76.3
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 3.9e-11 70.9 38 76.3
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 3.9e-11 70.9 38 76.3
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 3.9e-11 70.9 38 78.9
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 5.1e-11 70.5 38 73.7
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 5.1e-11 70.5 38 73.7
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 5.1e-11 70.5 38 73.7
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 6.7e-11 70.1 38 71.1
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 8.8e-11 69.7 38 76.3
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 8.8e-11 69.7 38 73.7
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 8.8e-11 69.7 38 71.1
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 1.1e-10 69.3 38 71.1
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 1.1e-10 69.3 42 64.3
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 1.5e-10 68.9 38 71.1
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 2.6e-10 68.2 38 73.7
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.4e-10 67.4 38 68.4
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.4e-10 67.4 38 68.4
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.4e-10 67.4 38 68.4
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 4.4e-10 67.4 38 68.4
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 1.3e-09 65.9 38 65.8
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 3.1e-08 61.2 38 60.5
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 4.5e-07 57.4 38 57.9
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 2.2e-06 55.1 38 55.3


User provided reference genes

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