Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07569 Brassica carinata HOM05D006298 ORTHO05D008167 1.0e-93 346.7 172 100.0
BcaC02g07571 Brassica carinata HOM05D006298 ORTHO05D008167 6.6e-88 327.4 179 92.7
BolC4t28046H Brassica oleracea HOM05D006298 ORTHO05D008167 5.6e-87 324.3 179 92.2
A04p28210 Brassica napus HOM05D006298 ORTHO05D008167 1.6e-81 306.2 179 88.8
C04p65570 Brassica napus HOM05D006298 ORTHO05D008167 1.6e-81 306.2 179 88.8
BraA04t18305Z Brassica rapa HOM05D006298 ORTHO05D008167 5.0e-80 301.2 179 87.7
BcaB06g28958 Brassica carinata HOM05D006298 ORTHO05D008167 9.8e-76 287.0 181 82.9
Sp4g19190 Schrenkiella parvula HOM05D006298 ORTHO05D008167 7.3e-71 270.8 191 77.0
Thhalv10017183m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 6.2e-70 267.7 190 75.8
Aa31LG5G22130 Aethionema arabicum HOM05D006298 ORTHO05D008167 8.1e-62 240.7 192 69.8
Carub.0004s1875 Capsella rubella HOM05D006298 ORTHO05D008167 9.0e-61 237.3 189 72.0
AT2G36895 Arabidopsis thaliana HOM05D006298 ORTHO05D008167 1.7e-56 223.0 214 62.1
THA.LOC104807061 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 5.6e-55 218.0 193 64.2
THA.LOC104805233 Tarenaya hassleriana HOM05D006298 ORTHO05D008167 4.0e-53 211.8 223 57.4
TWI53G1706 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 6.9e-53 211.1 189 63.0
Thecc.05G068100 Theobroma cacao HOM05D006298 ORTHO05D008167 2.6e-52 209.1 183 62.3
TAR623G0635 Trochodendron aralioides HOM05D006298 ORTHO05D008167 4.9e-51 204.9 197 61.4
Manes.08G011200 Manihot esculenta HOM05D006298 ORTHO05D008167 6.4e-51 204.5 198 59.6
Phvul.007G147500 Phaseolus vulgaris HOM05D006298 ORTHO05D008167 4.2e-50 201.8 188 60.6
Sabra16G0098900 Salix brachista HOM05D006298 ORTHO05D008167 5.4e-50 201.4 194 60.8
Cfa017623 Carpinus fangiana HOM05D006298 ORTHO05D008167 9.3e-50 200.7 193 59.6
VMungo0720G2332 Vigna mungo HOM05D006298 ORTHO05D008167 9.3e-50 200.7 191 62.3
PGR142G1273 Punica granatum HOM05D006298 ORTHO05D008167 2.1e-49 199.5 181 62.4
Potri.016G099300 Populus trichocarpa HOM05D006298 ORTHO05D008167 6.0e-49 198.0 193 58.5
TWI77G0409 Tripterygium wilfordii HOM05D006298 ORTHO05D008167 1.8e-48 196.4 190 58.4
Rhsim03G0091000 Rhododendron simsii HOM05D006298 ORTHO05D008167 2.3e-48 196.1 196 58.7
Duzib106G2039 Durio zibethinus HOM05D006298 ORTHO05D008167 8.7e-48 194.1 185 59.5
Lj2A120T46 Lonicera japonica HOM05D006298 ORTHO05D008167 1.1e-47 193.7 198 57.6
COL.COLO4_26951 Corchorus olitorius HOM05D006298 ORTHO05D008167 1.5e-47 193.4 188 59.0
Gohir.D01G130400 Gossypium hirsutum HOM05D006298 ORTHO05D008167 1.5e-47 193.4 191 58.1
Gorai.002G161800 Gossypium raimondii HOM05D006298 ORTHO05D008167 1.5e-47 193.4 191 58.1
CsaV3_3G036020 Cucumis sativus L. HOM05D006298 ORTHO05D008167 1.9e-47 193.0 156 64.7
QL07p043135 Quercus lobata HOM05D006298 ORTHO05D008167 1.9e-47 193.0 191 58.6
CSS0011355 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 2.5e-47 192.6 199 58.8
ClCG10G020070 Citrullus lanatus HOM05D006298 ORTHO05D008167 2.5e-47 192.6 155 63.9
CiPaw.09G171800 Carya illinoinensis HOM05D006298 ORTHO05D008167 3.3e-47 192.2 193 57.5
Hma1.2p1_0205F.1_g086920 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 3.3e-47 192.2 188 59.0
Gohir.A01G141763 Gossypium hirsutum HOM05D006298 ORTHO05D008167 4.3e-47 191.8 191 58.6
Cpa.g.sc102.32 Carica papaya HOM05D006298 ORTHO05D008167 1.3e-46 190.3 190 57.4
HanXRQChr11g0350481 Helianthus annuus HOM05D006298 ORTHO05D008167 2.1e-46 189.5 193 58.0
Actinidia08768 Actinidia chinensis HOM05D006298 ORTHO05D008167 2.8e-46 189.1 200 54.5
Haze_20529 Corylus avellana HOM05D006298 ORTHO05D008167 2.8e-46 189.1 213 54.0
Ca_11509_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 6.2e-46 188.0 191 55.0
Ciclev10012651m.g Citrus clementina HOM05D006298 ORTHO05D008167 8.1e-46 187.6 188 57.4
Lj4g0025039 Lotus japonicus HOM05D006298 ORTHO05D008167 8.1e-46 187.6 195 56.9
Cc06_g04290 Coffea canephora HOM05D006298 ORTHO05D008167 1.1e-45 187.2 190 58.9
CSS0035285 Camellia sinensis var. sinensis HOM05D006298 ORTHO05D008167 1.8e-45 186.4 200 59.0
AL4G33120 Arabidopsis lyrata HOM05D006298 ORTHO05D008167 3.1e-45 185.7 174 62.6
Sopen10g033440 Solanum pennellii HOM05D006298 ORTHO05D008167 4.0e-45 185.3 163 60.1
PGSC0003DMG400028288 Solanum tuberosum HOM05D006298 ORTHO05D008167 4.0e-45 185.3 162 60.5
Sed0010557 Sechium edule HOM05D006298 ORTHO05D008167 6.9e-45 184.5 188 58.5
GSVIVG01033647001 Vitis vinifera HOM05D006298 ORTHO05D008167 6.9e-45 184.5 191 57.6
Solyc10g083990.2 Solanum lycopersicum HOM05D006298 ORTHO05D008167 9.0e-45 184.1 163 59.5
Lalb_Chr21g0315031 Lupinus albus HOM05D006298 ORTHO05D008167 1.2e-44 183.7 189 56.1
arahy.Tifrunner.gnm1.ann1.GSM08A Arachis hypogaea HOM05D006298 ORTHO05D008167 2.6e-44 182.6 196 54.1
arahy.Tifrunner.gnm1.ann1.UZM884 Arachis hypogaea HOM05D006298 ORTHO05D008167 2.6e-44 182.6 196 54.1
Eucgr.K02926 Eucalyptus grandis HOM05D006298 ORTHO05D008167 2.6e-44 182.6 198 55.6
Lsat_1_v5_gn_1_51681 Lactuca sativa HOM05D006298 ORTHO05D008167 3.4e-44 182.2 196 58.2
Medtr1g063100 Medicago truncatula HOM05D006298 ORTHO05D008167 6.4e-43 177.9 184 54.3
Peaxi162Scf00311g01110 Petunia axillaris HOM05D006298 ORTHO05D008167 6.4e-43 177.9 150 62.7
FAN02G1782 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.1e-42 177.2 152 61.8
MD04G1092500 Malus domestica HOM05D006298 ORTHO05D008167 1.1e-42 177.2 196 57.7
Nitab4.5_0000814g0050 Nicotiana tabacum HOM05D006298 ORTHO05D008167 1.1e-42 177.2 150 62.0
TPR.G11270 Trifolium pratense HOM05D006298 ORTHO05D008167 1.1e-42 177.2 157 59.2
FvH4_6g16470 Fragaria vesca HOM05D006298 ORTHO05D008167 1.4e-42 176.8 182 56.6
FAN14G4061 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.4e-42 176.8 182 56.6
Nitab4.5_0000063g0130 Nicotiana tabacum HOM05D006298 ORTHO05D008167 1.4e-42 176.8 150 62.0
Prupe.7G128900 Prunus persica HOM05D006298 ORTHO05D008167 1.4e-42 176.8 195 55.9
CANSAT80G2892 Cannabis sativa HOM05D006298 ORTHO05D008167 1.9e-42 176.4 162 59.9
Migut.J00651 Erythranthe guttata HOM05D006298 ORTHO05D008167 2.4e-42 176.0 196 54.1
DCAR_017674 Daucus carota HOM05D006298 ORTHO05D008167 3.2e-42 175.6 194 55.2
Psat6g073640 Pisum sativum HOM05D006298 ORTHO05D008167 3.2e-42 175.6 140 61.4
Actinidia28907 Actinidia chinensis HOM05D006298 ORTHO05D008167 5.5e-42 174.9 241 46.5
Aqoxy1G01145 Aquilegia oxysepala HOM05D006298 ORTHO05D008167 5.5e-42 174.9 135 65.2
Glyma.10G054900 Glycine max HOM05D006298 ORTHO05D008167 5.5e-42 174.9 189 51.9
Dinv35789 Davidia involucrata HOM05D006298 ORTHO05D008167 7.1e-42 174.5 189 56.6
FAN09G1272 Fragaria x ananassa HOM05D006298 ORTHO05D008167 7.1e-42 174.5 192 54.7
Sc20g0005540 Simmondsia chinensis HOM05D006298 ORTHO05D008167 7.1e-42 174.5 166 57.2
SGA_v2.0_scaffold40G15525 Striga asiatica HOM05D006298 ORTHO05D008167 9.3e-42 174.1 197 53.3
FAN05G1999 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.6e-41 173.3 186 56.5
FAN05G2800 Fragaria x ananassa HOM05D006298 ORTHO05D008167 1.6e-41 173.3 186 56.5
RcHm_v2.0_Chr3g0470361 Rosa chinensis HOM05D006298 ORTHO05D008167 1.6e-41 173.3 151 60.9
AUR62040336 Chenopodium quinoa HOM05D006298 ORTHO05D008167 6.0e-41 171.4 196 52.6
AUR62042070 Chenopodium quinoa HOM05D006298 ORTHO05D008167 6.0e-41 171.4 194 53.1
AUR62044331 Chenopodium quinoa HOM05D006298 ORTHO05D008167 6.0e-41 171.4 194 53.1
Glyma.13G142000 Glycine max HOM05D006298 ORTHO05D008167 1.0e-40 170.6 119 69.7
Oeu053684.1 Olea europaea HOM05D006298 ORTHO05D008167 1.0e-40 170.6 205 53.2
PSO339G0145 Papaver somniferum HOM05D006298 ORTHO05D008167 1.0e-40 170.6 192 51.0
ECA248G3050 Erigeron canadensis HOM05D006298 ORTHO05D008167 1.3e-40 170.2 129 66.7
Atru.BG.206.p Acer truncatum HOM05D006298 ORTHO05D008167 1.9e-39 166.4 116 69.8
EL10Ac7g16640 Beta vulgaris HOM05D006298 ORTHO05D008167 1.9e-39 166.4 148 59.5
vmacro07297 Vaccinium macrocarpon HOM05D006298 ORTHO05D008167 2.5e-39 166.0 117 70.9
PSO063G5537 Papaver somniferum HOM05D006298 ORTHO05D008167 4.3e-39 165.2 193 49.2
HPP92_022584 Vanilla planifolia HOM05D006298 ORTHO05D008167 4.3e-39 165.2 197 51.8
Os03g0152600 Oryza sativa ssp. japonica HOM05D006298 ORTHO05D008167 4.8e-38 161.8 162 54.9
MBI18_g02636_MAGBIO Magnolia biondii HOM05D006298 ORTHO05D008167 1.8e-37 159.8 181 50.8
Zm00001eb403160 Zea mays HOM05D006298 ORTHO05D008167 6.9e-37 157.9 164 53.0
CDE04G2630 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 9.0e-37 157.5 199 47.2
CDE03G0133 Ceratophyllum demersum HOM05D006298 ORTHO05D008167 3.4e-36 155.6 147 54.4
ATR0219G012 Amborella trichopoda HOM05D006298 ORTHO05D008167 4.5e-36 155.2 197 46.7
SMO119G0246 Selaginella moellendorffii HOM05D006298 ORTHO05D008167 5.5e-34 148.3 143 54.5
Ah.08g211590 Amaranthus hybridus HOM05D006298 ORTHO05D008167 1.6e-33 146.7 147 53.7
Mapoly0063s0087 Marchantia polymorpha HOM05D006298 ORTHO05D008167 6.0e-33 144.8 131 52.7
Pp3c6_17550 Physcomitrium patens HOM05D006298 ORTHO05D008167 7.4e-31 137.9 133 51.1
AagrBONN_evm.TU.Sc2ySwM_228.4347 Anthoceros agrestis HOM05D006298 ORTHO05D008167 1.3e-30 137.1 106 61.3
AUR62042510 Chenopodium quinoa HOM05D006298 ORTHO05D008167 1.8e-29 133.3 177 50.3
Nn6g35281 Nelumbo nucifera HOM05D006298 ORTHO05D008167 4.1e-29 132.1 109 64.2
SEGI_37587 Sequoiadendron giganteum HOM05D006298 ORTHO05D008167 1.5e-28 130.2 99 65.7
unitig_26.g9235 Utricularia gibba HOM05D006298 ORTHO05D008167 3.2e-26 122.5 80 72.5
Atru.chr8.1795 Acer truncatum HOM05D006298 ORTHO05D008167 3.6e-25 119.0 63 90.5
Duzib093G1320 Durio zibethinus HOM05D006298 ORTHO05D008167 2.3e-24 116.3 107 58.9
Hma1.2p1_0205F.1_g086930 Hydrangea macrophylla HOM05D006298 ORTHO05D008167 3.9e-24 115.5 148 50.0
CBR_g45378 Chara braunii HOM05D006298 ORTHO05D008167 1.1e-21 107.5 69 69.6
BcaB01g03809 Brassica carinata HOM05D006298 ORTHO05D008167 3.1e-21 105.9 141 50.4
Medtr6g035275 Medicago truncatula HOM05D006298 ORTHO05D008167 1.5e-20 103.6 56 87.5
CARHR131360 Cardamine hirsuta HOM05D006298 ORTHO05D008167 2.6e-15 86.3 43 95.3
Cre11.g469100 Chlamydomonas reinhardtii HOM05D006298 ORTHO05D008167 2.4e-13 79.7 120 41.7
Ca_27221_v3 Cicer arietinum L. HOM05D006298 ORTHO05D008167 9.1e-13 77.8 60 56.7
Thhalv10000465m.g Eutrema salsugineum HOM05D006298 ORTHO05D008167 2.9e-11 72.8 67 61.2
Prupe.4G234300 Prunus persica HOM05D006298 ORTHO05D007008 1.5e-07 60.5 34 76.5
arahy.Tifrunner.gnm1.ann1.31G0Q2 Arachis hypogaea HOM05D006298 ORTHO05D082484 6.3e-06 55.1 31 67.7


User provided reference genes

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