Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07566 Brassica carinata HOM05D002801 ORTHO05D003002 1.8e-173 612.5 302 100.0
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 5.8e-63 245.4 317 50.8
BolC4t28051H Brassica oleracea HOM05D002801 ORTHO05D003002 1.7e-62 243.8 216 67.1
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 7.3e-58 228.4 323 47.7
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 9.5e-58 228.0 305 49.8
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 9.5e-58 228.0 305 49.8
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 6.2e-57 225.3 301 49.5
A04p28250 Brassica napus HOM05D002801 ORTHO05D003002 1.8e-56 223.8 143 82.5
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 1.2e-55 221.1 322 46.9
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 1.5e-55 220.7 306 49.3
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 1.5e-55 220.7 306 49.3
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 1.7e-54 217.2 318 46.2
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 1.9e-53 213.8 334 45.5
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 1.2e-52 211.1 325 45.5
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 7.3e-50 201.8 326 45.4
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 3.1e-48 196.4 325 44.6
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 8.7e-43 178.3 156 64.1
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 4.2e-29 132.9 169 51.5
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 1.6e-20 104.4 151 43.7
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 1.3e-19 101.3 159 44.0
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 3.0e-19 100.1 167 42.5
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 8.7e-19 98.6 171 41.5
COL.COLO4_10010 Corchorus olitorius HOM05D002801 ORTHO05D003002 1.1e-18 98.2 156 43.6
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.1e-18 98.2 162 44.4
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 1.9e-18 97.4 164 43.9
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 3.3e-18 96.7 171 41.5
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 4.3e-18 96.3 156 42.3
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 4.3e-18 96.3 167 42.5
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 4.3e-18 96.3 187 38.5
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 9.6e-18 95.1 156 42.3
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 1.3e-17 94.7 163 41.1
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 2.1e-17 94.0 153 42.5
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 2.8e-17 93.6 162 42.6
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 2.8e-17 93.6 178 41.6
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 3.7e-17 93.2 162 42.0
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 4.8e-17 92.8 156 40.4
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 6.3e-17 92.4 164 41.5
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 8.2e-17 92.0 153 41.8
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 8.2e-17 92.0 162 41.4
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 1.4e-16 91.3 184 37.5
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.4e-16 91.3 153 41.8
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.8e-16 90.9 160 41.9
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 2.4e-16 90.5 153 39.2
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 3.1e-16 90.1 162 42.0
Gorai.002G247700 Gossypium raimondii HOM05D002801 ORTHO05D003002 3.1e-16 90.1 162 40.1
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 3.1e-16 90.1 146 40.4
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 4.1e-16 89.7 154 38.3
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 4.1e-16 89.7 157 40.1
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 4.1e-16 89.7 166 39.8
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 5.3e-16 89.4 184 37.0
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 5.3e-16 89.4 162 40.1
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 5.3e-16 89.4 227 36.1
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 5.3e-16 89.4 160 41.9
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 5.3e-16 89.4 196 37.2
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 6.9e-16 89.0 162 40.1
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 6.9e-16 89.0 159 37.1
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 6.9e-16 89.0 181 35.9
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 1.2e-15 88.2 161 38.5
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 1.2e-15 88.2 159 36.5
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 1.5e-15 87.8 164 41.5
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 1.5e-15 87.8 156 40.4
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 2.6e-15 87.0 163 38.7
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 3.4e-15 86.7 160 40.6
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 5.9e-15 85.9 181 36.5
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 7.6e-15 85.5 189 36.5
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 1.0e-14 85.1 163 39.3
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 1.3e-14 84.7 154 38.3
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 2.2e-14 84.0 190 33.7
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 2.2e-14 84.0 157 40.1
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 2.9e-14 83.6 178 36.0
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 3.8e-14 83.2 160 40.6
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 5.0e-14 82.8 184 36.4
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 6.5e-14 82.4 237 34.2
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 6.5e-14 82.4 239 32.6
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 8.4e-14 82.0 237 34.2
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 8.4e-14 82.0 162 37.0
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 8.4e-14 82.0 158 40.5
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 1.4e-13 81.3 165 36.4
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 1.9e-13 80.9 189 35.4
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 2.5e-13 80.5 164 40.2
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 2.5e-13 80.5 159 40.3
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 2.5e-13 80.5 159 40.9
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 4.2e-13 79.7 165 35.8
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 4.2e-13 79.7 165 35.8
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 5.5e-13 79.3 162 38.9
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 9.3e-13 78.6 172 38.4
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 1.2e-12 78.2 169 36.1
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 1.2e-12 78.2 160 36.9
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 1.2e-12 78.2 150 40.0
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 1.2e-12 78.2 148 41.2
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 2.1e-12 77.4 156 37.8
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 4.6e-12 76.3 161 35.4
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 6.1e-12 75.9 219 32.0
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 6.1e-12 75.9 191 31.9
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 6.1e-12 75.9 158 37.3
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 6.1e-12 75.9 161 37.3
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 1.3e-11 74.7 146 36.3
CSS0030915 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 1.8e-11 74.3 89 50.6
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 5.1e-11 72.8 162 36.4
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 5.1e-11 72.8 246 30.9
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 6.7e-11 72.4 147 40.1
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 1.5e-10 71.2 180 36.7
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 2.5e-10 70.5 183 31.1
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 2.5e-10 70.5 165 36.4
AUR62044224 Chenopodium quinoa HOM05D002801 ORTHO05D003002 4.3e-10 69.7 83 47.0
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 5.7e-10 69.3 163 30.7
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 7.4e-10 68.9 191 36.6
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 2.2e-09 67.4 136 33.8
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 8.2e-09 65.5 138 35.5
Cfa018821 Carpinus fangiana HOM05D000128 ORTHO05D000059 1.1e-08 65.1 59 59.3
C04p65610 Brassica napus HOM05D002801 ORTHO05D003002 1.4e-08 64.7 54 66.7
BraA04t18309Z Brassica rapa HOM05D002801 ORTHO05D003002 1.4e-08 64.7 54 66.7
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 2.0e-07 60.8 156 35.3
Cc04_g13310 Coffea canephora HOM05D002801 ORTHO05D003002 4.5e-07 59.7 162 32.7
BolC4t28053H Brassica oleracea HOM05D002801 ORTHO05D003002 1.7e-06 57.8 47 68.1
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 1.7e-06 57.8 57 52.6
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 2.2e-06 57.4 145 35.2
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 2.9e-06 57.0 146 32.2


User provided reference genes

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