Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07541 Brassica carinata HOM05D007723 ORTHO05D010327 5.8e-115 417.5 207 100.0
C05p23510 Brassica napus HOM05D007723 ORTHO05D010327 5.6e-102 374.4 213 89.7
BcaC05g29897 Brassica carinata HOM05D007723 ORTHO05D010327 1.0e-71 273.9 223 67.7
BolC5t34971H Brassica oleracea HOM05D007723 ORTHO05D010327 1.0e-71 273.9 223 67.7
A05p29350 Brassica napus HOM05D007723 ORTHO05D010327 8.2e-69 264.2 225 63.6
A05p29750 Brassica napus HOM05D007723 ORTHO05D010327 8.2e-69 264.2 225 63.6
A05p31800 Brassica napus HOM05D007723 ORTHO05D010327 2.2e-66 256.1 226 61.9
BcaC05g30204 Brassica carinata HOM05D007723 ORTHO05D010327 1.5e-65 253.4 227 61.7
C05p48260 Brassica napus HOM05D007723 ORTHO05D010327 1.5e-65 253.4 226 61.5
BraA05t22011Z Brassica rapa HOM05D007723 ORTHO05D010327 8.8e-63 244.2 215 61.9
AL7G48270 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.7e-45 186.8 236 51.3
Thhalv10018407m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 1.3e-42 177.2 225 49.8
AL5G28350 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.9e-42 176.0 242 45.5
AL7G49110 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 6.1e-40 168.3 229 47.2
A05p29590 Brassica napus HOM05D007723 ORTHO05D010327 3.0e-39 166.0 140 61.4
CARHR253110 Cardamine hirsuta HOM05D007723 ORTHO05D010327 1.5e-38 163.7 223 49.8
AL7G47660 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.7e-37 159.1 221 46.2
CARHR219370 Cardamine hirsuta HOM05D007723 ORTHO05D010327 6.4e-37 158.3 172 51.2
Thhalv10019472m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 8.3e-37 157.9 219 46.6
AT5G41690 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 3.2e-36 156.0 221 45.7
BolC5t31065H Brassica oleracea HOM05D007723 ORTHO05D010327 4.1e-36 155.6 87 89.7
AL7G49700 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.0e-35 153.3 190 48.9
AL7G49680 Arabidopsis lyrata HOM05D003182 ORTHO05D003829 2.7e-35 152.9 186 47.8
Carub.0007s3379 Capsella rubella HOM05D007723 ORTHO05D010327 1.7e-34 150.2 224 47.3
Carub.0005s1501 Capsella rubella HOM05D007723 ORTHO05D010327 1.6e-32 143.7 237 39.7
AL7G46090 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 4.7e-32 142.1 229 44.5
AL7G48800 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.6e-30 136.3 178 46.6
AL7G49150 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 2.6e-30 136.3 178 46.6
AT1G45100 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 2.6e-30 136.3 217 43.3
CARHR065380 Cardamine hirsuta HOM05D007723 ORTHO05D010327 4.4e-30 135.6 213 43.7
Carub.0007s3512 Capsella rubella HOM05D007723 ORTHO05D010327 9.8e-30 134.4 199 42.7
AT3G10845 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 2.2e-29 133.3 211 43.1
AT3G48840 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 4.1e-28 129.0 168 45.2
BcaB05g22365 Brassica carinata HOM05D007723 ORTHO05D017516 2.7e-27 126.3 170 47.1
BraA02t06793Z Brassica rapa HOM05D007723 ORTHO05D010327 2.7e-27 126.3 222 43.7
BcaC03g18014 Brassica carinata HOM05D007723 ORTHO05D021795 4.6e-27 125.6 231 38.5
C02p60730 Brassica napus HOM05D007723 ORTHO05D021795 4.6e-27 125.6 231 38.5
BolC2t12124H Brassica oleracea HOM05D007723 ORTHO05D021795 4.6e-27 125.6 231 38.5
A02p17480 Brassica napus HOM05D007723 ORTHO05D010327 7.8e-27 124.8 222 43.2
Sp5g24210 Schrenkiella parvula HOM05D007723 ORTHO05D010327 1.3e-26 124.0 206 42.7
A02p40830 Brassica napus HOM05D007723 ORTHO05D021795 1.7e-26 123.6 225 38.7
BraA02t09028Z Brassica rapa HOM05D007723 ORTHO05D021795 1.7e-26 123.6 225 38.7
Carub.0007s3490 Capsella rubella HOM05D007723 ORTHO05D010327 1.7e-26 123.6 210 41.9
Carub.0007s2554 Capsella rubella HOM05D007723 ORTHO05D010327 5.1e-26 122.1 184 41.3
Sp5g26900 Schrenkiella parvula HOM05D007723 ORTHO05D010327 6.6e-26 121.7 213 42.7
C01p12020 Brassica napus HOM05D007723 ORTHO05D019955 1.5e-25 120.6 178 44.9
BolC1t01176H Brassica oleracea HOM05D007723 ORTHO05D019955 7.3e-25 118.2 178 44.4
A06p01840 Brassica napus HOM05D007723 ORTHO05D017516 9.5e-25 117.9 177 45.2
BraA06t23401Z Brassica rapa HOM05D007723 ORTHO05D017516 9.5e-25 117.9 177 45.2
AL7G49950 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.2e-24 117.5 204 37.7
BcaB07g29891 Brassica carinata HOM05D007723 ORTHO05D021795 2.8e-24 116.3 226 38.5
Thhalv10018369m.g Eutrema salsugineum HOM05D007723 ORTHO05D010327 4.7e-24 115.5 215 37.7
AT3G48835 Arabidopsis thaliana HOM05D007723 ORTHO05D010327 1.1e-23 114.4 150 44.7
BolC6t35870H Brassica oleracea HOM05D007723 ORTHO05D017516 1.8e-23 113.6 177 42.9
C06p07840 Brassica napus HOM05D007723 ORTHO05D017516 4.0e-23 112.5 188 41.0
SpUn0020_0070 Schrenkiella parvula HOM05D007723 ORTHO05D010327 8.9e-23 111.3 164 47.0
AL7G46120 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 1.2e-22 110.9 169 43.8
BcaB05g22608 Brassica carinata HOM05D007723 ORTHO05D019955 5.8e-22 108.6 152 44.7
CARHR037370 Cardamine hirsuta HOM05D007723 ORTHO05D010327 1.1e-20 104.4 120 52.5
BcaC03g15302 Brassica carinata HOM05D007723 ORTHO05D010327 7.1e-20 101.7 170 40.0
C02p29140 Brassica napus HOM05D007723 ORTHO05D010327 7.1e-20 101.7 170 40.0
BolC2t08963H Brassica oleracea HOM05D007723 ORTHO05D010327 1.3e-18 97.4 171 39.8
AL3G52780 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.9e-18 95.9 186 37.6
BcaC08g43259 Brassica carinata HOM05D007723 ORTHO05D017516 6.6e-18 95.1 202 36.1
C06p06040 Brassica napus HOM05D007723 ORTHO05D017516 6.6e-18 95.1 202 36.1
BolC6t35717H Brassica oleracea HOM05D007723 ORTHO05D017516 6.6e-18 95.1 202 36.1
C03p41670 Brassica napus HOM05D007723 ORTHO05D010327 1.5e-17 94.0 170 40.0
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 4.3e-17 92.4 238 32.8
CARHR037380 Cardamine hirsuta HOM05D007723 ORTHO05D010327 5.6e-17 92.0 153 39.2
BraA01t00966Z Brassica rapa HOM05D007723 ORTHO05D019955 7.3e-17 91.7 177 41.8
Carub.0007s3494 Capsella rubella HOM05D007723 ORTHO05D010327 3.6e-16 89.4 202 31.2
AL7G49120 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 3.1e-15 86.3 109 44.0
BcaC09g51543 Brassica carinata HOM05D007723 ORTHO05D019955 6.8e-15 85.1 175 40.0
A01p10210 Brassica napus HOM05D007723 ORTHO05D019955 8.9e-15 84.7 199 35.7
BcaC08g43419 Brassica carinata HOM05D007723 ORTHO05D010327 1.2e-14 84.3 135 40.7
Sp5g26910 Schrenkiella parvula HOM05D007723 ORTHO05D010327 1.2e-14 84.3 120 42.5
BcaC07g38889 Brassica carinata HOM05D007723 ORTHO05D010327 1.5e-14 84.0 163 36.2
AL7G49130 Arabidopsis lyrata HOM05D007723 ORTHO05D010327 9.9e-14 81.3 113 36.3
BolC3t16447H Brassica oleracea HOM05D007723 ORTHO05D010327 2.9e-13 79.7 170 34.1
BolC8t49452H Brassica oleracea HOM05D007723 ORTHO05D010327 5.4e-12 75.5 115 37.4
CARHR123890 Cardamine hirsuta HOM05D007723 ORTHO05D010327 3.5e-11 72.8 154 35.7
BolC2t07291H Brassica oleracea HOM05D007723 ORTHO05D019955 4.6e-11 72.4 120 39.2
Psat6g098720 Pisum sativum HOM05D002658 ORTHO05D003000 5.3e-07 58.9 154 30.5
Sc06g0004580 Simmondsia chinensis HOM05D002491 ORTHO05D002651 1.2e-06 57.8 168 30.4
BcaB05g22364 Brassica carinata HOM05D007723 ORTHO05D010327 2.0e-06 57.0 86 38.4
BcaB05g24685 Brassica carinata HOM05D007723 ORTHO05D010327 2.6e-06 56.6 41 61.0
CSS0027144 Camellia sinensis var. sinensis HOM05D002491 ORTHO05D002651 2.6e-06 56.6 168 30.4
C06p07850 Brassica napus HOM05D007723 ORTHO05D017516 9.9e-06 54.7 99 42.4


User provided reference genes

Program Settings