Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07519 Brassica carinata HOM05D004973 ORTHO05D006119 1.8e-81 306.2 193 100.0
C04p10700 Brassica napus HOM05D004973 ORTHO05D006119 4.9e-39 165.2 117 99.1
A04p28480 Brassica napus HOM05D004973 ORTHO05D006119 8.9e-33 144.4 161 60.2
A03p20600 Brassica napus HOM05D000861 ORTHO05D001799 2.6e-32 142.9 148 62.2
BcaNung06611 Brassica carinata HOM05D004973 ORTHO05D006119 5.7e-32 141.7 161 59.6
C04p65800 Brassica napus HOM05D004973 ORTHO05D006119 5.7e-32 141.7 161 59.6
BolC4t28082H Brassica oleracea HOM05D004973 ORTHO05D006119 5.7e-32 141.7 161 59.6
Thhalv10017275m.g Eutrema salsugineum HOM05D004973 ORTHO05D006119 2.8e-31 139.4 151 60.9
C03p24200 Brassica napus HOM05D000861 ORTHO05D001799 1.1e-30 137.5 151 76.2
BolC3t14814H Brassica oleracea HOM05D004973 ORTHO05D006119 1.1e-30 137.5 151 76.2
BraA04t18326Z Brassica rapa HOM05D004973 ORTHO05D006119 3.2e-30 136.0 156 57.7
AT2G37300 Arabidopsis thaliana HOM05D004973 ORTHO05D006119 2.0e-29 133.3 155 58.1
BcaNung06612 Brassica carinata HOM05D004973 ORTHO05D006119 9.5e-27 124.4 162 56.8
AL4G33680 Arabidopsis lyrata HOM05D004973 ORTHO05D006119 4.7e-26 122.1 151 57.0
A05p08610 Brassica napus HOM05D004973 ORTHO05D006119 1.2e-24 117.5 70 94.3
BraA03t11302Z Brassica rapa HOM05D000861 ORTHO05D001799 8.3e-23 111.3 148 68.9
Sp4g19620 Schrenkiella parvula HOM05D004973 ORTHO05D006119 7.0e-22 108.2 171 56.7
BolC4t22663H Brassica oleracea HOM05D004973 ORTHO05D006119 7.8e-21 104.8 83 97.6
Carub.0004s1921 Capsella rubella HOM05D004973 ORTHO05D006119 5.0e-20 102.1 151 52.3
THA.LOC104805339 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 5.2e-17 92.0 156 45.5
THA.LOC104823441 Tarenaya hassleriana HOM05D004973 ORTHO05D006119 3.7e-15 85.9 154 42.9
CARHR132290 Cardamine hirsuta HOM05D004973 ORTHO05D006119 1.3e-12 77.4 154 44.8
MD12G1129800 Malus domestica HOM05D004973 ORTHO05D006119 1.3e-12 77.4 67 67.2
Manes.09G071500 Manihot esculenta HOM05D004973 ORTHO05D006119 1.3e-12 77.4 67 65.7
FAN05G3543 Fragaria x ananassa HOM05D004973 ORTHO05D006119 1.7e-12 77.0 65 66.2
FAN14G1622 Fragaria x ananassa HOM05D004973 ORTHO05D006119 3.9e-12 75.9 65 64.6
Medtr1g067220 Medicago truncatula HOM05D004973 ORTHO05D006119 3.9e-12 75.9 69 62.3
Potri.016G082700 Populus trichocarpa HOM05D004973 ORTHO05D006119 3.9e-12 75.9 64 68.8
COL.COLO4_10304 Corchorus olitorius HOM05D004973 ORTHO05D006119 5.1e-12 75.5 73 63.0
HanXRQChr14g0453421 Helianthus annuus HOM05D004973 ORTHO05D006119 5.1e-12 75.5 61 70.5
CsaV3_4G024460 Cucumis sativus L. HOM05D004973 ORTHO05D006119 8.6e-12 74.7 67 64.2
FAN09G0990 Fragaria x ananassa HOM05D004973 ORTHO05D006119 8.6e-12 74.7 65 64.6
Manes.08G000800 Manihot esculenta HOM05D004973 ORTHO05D006119 8.6e-12 74.7 66 66.7
Lalb_Chr06g0171201 Lupinus albus HOM05D004973 ORTHO05D006119 1.1e-11 74.3 68 61.8
Eucgr.K03187 Eucalyptus grandis HOM05D004973 ORTHO05D006119 1.5e-11 73.9 61 67.2
GSVIVG01025573001 Vitis vinifera HOM05D004973 ORTHO05D009107 1.5e-11 73.9 64 65.6
QL07p045858 Quercus lobata HOM05D004973 ORTHO05D006119 1.9e-11 73.6 65 66.2
TPR.G35656 Trifolium pratense HOM05D004973 ORTHO05D006119 1.9e-11 73.6 69 60.9
Prupe.6G245100 Prunus persica HOM05D004973 ORTHO05D009107 2.5e-11 73.2 64 62.5
PGR004G2597 Punica granatum HOM05D004973 ORTHO05D006119 2.5e-11 73.2 63 66.7
arahy.Tifrunner.gnm1.ann1.P2DQEA Arachis hypogaea HOM05D004973 ORTHO05D006119 4.3e-11 72.4 69 59.4
Cpa.g.sc114.29 Carica papaya HOM05D004973 ORTHO05D006119 4.3e-11 72.4 64 64.1
Gorai.006G177300 Gossypium raimondii HOM05D004973 ORTHO05D006119 4.3e-11 72.4 64 65.6
ClCG04G008700 Citrullus lanatus HOM05D004973 ORTHO05D006119 5.6e-11 72.0 67 62.7
Haze_20682 Corylus avellana HOM05D004973 ORTHO05D006119 5.6e-11 72.0 61 68.9
MELO3C003079.2 Cucumis melo HOM05D004973 ORTHO05D006119 5.6e-11 72.0 67 61.2
Gohir.A04G077600 Gossypium hirsutum HOM05D004973 ORTHO05D006119 5.6e-11 72.0 62 66.1
arahy.Tifrunner.gnm1.ann1.C8BSPY Arachis hypogaea HOM05D004973 ORTHO05D006119 7.3e-11 71.6 80 53.8
FAN02G2240 Fragaria x ananassa HOM05D004973 ORTHO05D006119 7.3e-11 71.6 64 62.5
Glyma.03G176000 Glycine max HOM05D004973 ORTHO05D006119 7.3e-11 71.6 61 68.9
Glyma.19G176500 Glycine max HOM05D004973 ORTHO05D006119 7.3e-11 71.6 61 68.9
Gohir.D09G155800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 7.3e-11 71.6 64 65.6
Nitab4.5_0000202g0430 Nicotiana tabacum HOM05D004973 ORTHO05D006119 7.3e-11 71.6 73 60.3
Peaxi162Scf00472g00079 Petunia axillaris HOM05D004973 ORTHO05D006119 7.3e-11 71.6 73 61.6
Ciclev10012401m.g Citrus clementina HOM05D004973 ORTHO05D006119 9.5e-11 71.2 62 64.5
Potri.006G216300 Populus trichocarpa HOM05D004973 ORTHO05D006119 9.5e-11 71.2 62 64.5
Dinv37236 Davidia involucrata HOM05D004973 ORTHO05D006119 1.2e-10 70.9 73 58.9
FvH4_6g14910 Fragaria vesca HOM05D004973 ORTHO05D006119 1.2e-10 70.9 65 61.5
Gohir.D04G116800 Gossypium hirsutum HOM05D004973 ORTHO05D006119 1.2e-10 70.9 62 64.5
Gorai.009G421700 Gossypium raimondii HOM05D004973 ORTHO05D006119 1.2e-10 70.9 62 64.5
MSTRG.10290 Avicennia marina HOM05D004973 ORTHO05D006119 1.6e-10 70.5 71 57.7
Lj5g0023317 Lotus japonicus HOM05D004973 ORTHO05D006119 1.6e-10 70.5 67 62.7
RcHm_v2.0_Chr3g0468111 Rosa chinensis HOM05D004973 ORTHO05D006119 1.6e-10 70.5 147 43.5
Eucgr.A01206 Eucalyptus grandis HOM05D004973 ORTHO05D006119 2.1e-10 70.1 61 67.2
HanXRQChr07g0195961 Helianthus annuus HOM05D004973 ORTHO05D006119 2.8e-10 69.7 61 67.2
CSS0037973 Camellia sinensis var. sinensis HOM05D004973 ORTHO05D006119 3.6e-10 69.3 73 58.9
Os03g0283400 Oryza sativa ssp. japonica HOM05D004973 ORTHO05D006119 3.6e-10 69.3 62 59.7
VMungo1383G2298 Vigna mungo HOM05D004973 ORTHO05D006119 3.6e-10 69.3 58 65.5
DCAR_017742 Daucus carota HOM05D004973 ORTHO05D006119 4.7e-10 68.9 62 61.3
MD04G1111000 Malus domestica HOM05D004973 ORTHO05D006119 4.7e-10 68.9 132 40.2
Nn2g10587 Nelumbo nucifera HOM05D004973 ORTHO05D006119 4.7e-10 68.9 81 54.3
Thecc.05G050500 Theobroma cacao HOM05D004973 ORTHO05D006119 4.7e-10 68.9 60 68.3
ECA238G2925 Erigeron canadensis HOM05D004973 ORTHO05D006119 6.2e-10 68.6 65 61.5
Glyma.10G047400 Glycine max HOM05D004973 ORTHO05D006119 6.2e-10 68.6 62 64.5
Phvul.007G161600 Phaseolus vulgaris HOM05D004973 ORTHO05D006119 6.2e-10 68.6 62 64.5
Psat6g069760 Pisum sativum HOM05D004973 ORTHO05D006119 6.2e-10 68.6 63 61.9
TAR623G0749 Trochodendron aralioides HOM05D004973 ORTHO05D006119 6.2e-10 68.6 73 57.5
Atru.chr8.2512 Acer truncatum HOM05D004973 ORTHO05D006119 8.1e-10 68.2 65 61.5
Lsat_1_v5_gn_2_110141 Lactuca sativa HOM05D004973 ORTHO05D006119 8.1e-10 68.2 73 57.5
TWI53G0396 Tripterygium wilfordii HOM05D004973 ORTHO05D006119 8.1e-10 68.2 64 60.9
MSTRG.26739 Avicennia marina HOM05D004973 ORTHO05D006119 1.1e-09 67.8 75 52.0
BcaB02g09290 Brassica carinata HOM05D004973 ORTHO05D006119 1.1e-09 67.8 155 41.3
Hma1.2p1_0111F.1_g053560 Hydrangea macrophylla HOM05D004973 ORTHO05D006119 1.1e-09 67.8 76 55.3
Nn2g12943 Nelumbo nucifera HOM05D004973 ORTHO05D006119 1.1e-09 67.8 82 52.4
Zm00001eb012960 Zea mays HOM05D004973 ORTHO05D006119 1.1e-09 67.8 62 59.7
Aqoxy4G03126 Aquilegia oxysepala HOM05D004973 ORTHO05D006119 1.4e-09 67.4 66 59.1
BcaC02g11850 Brassica carinata HOM05D004973 ORTHO05D006119 1.8e-09 67.0 40 92.5
CiPaw.09G185000 Carya illinoinensis HOM05D004973 ORTHO05D006119 1.8e-09 67.0 67 59.7
Nitab4.5_0016310g0010 Nicotiana tabacum HOM05D004973 ORTHO05D006119 1.8e-09 67.0 73 57.5
PGSC0003DMG400011051 Solanum tuberosum HOM05D004973 ORTHO05D006119 1.8e-09 67.0 61 62.3
Dinv35683 Davidia involucrata HOM05D004973 ORTHO05D006119 2.3e-09 66.6 70 57.1
Hund12070 Selenicereus undatus HOM05D004973 ORTHO05D006119 2.3e-09 66.6 73 54.8
CiPaw.10G138900 Carya illinoinensis HOM05D004973 ORTHO05D006119 3.1e-09 66.2 59 64.4
CDE04G2944 Ceratophyllum demersum HOM05D005673 ORTHO05D007081 3.1e-09 66.2 62 58.1
PSO384G3176 Papaver somniferum HOM05D004973 ORTHO05D006119 3.1e-09 66.2 76 51.3
Nitab4.5_0000643g0210 Nicotiana tabacum HOM05D004973 ORTHO05D006119 4.0e-09 65.9 141 41.1
Sabra06G0166700 Salix brachista HOM05D004973 ORTHO05D006119 6.8e-09 65.1 58 65.5
Gohir.A09G160200 Gossypium hirsutum HOM05D004973 ORTHO05D006119 8.9e-09 64.7 149 40.3
HPP92_001696 Vanilla planifolia HOM05D004973 ORTHO05D006119 8.9e-09 64.7 71 50.7
SalBow4G1465 Salvia bowleyana HOM05D004973 ORTHO05D006119 1.2e-08 64.3 71 56.3
unitig_60.g25816 Utricularia gibba HOM05D004973 ORTHO05D006119 1.2e-08 64.3 79 51.9
PGR004G0295 Punica granatum HOM05D004973 ORTHO05D006119 1.5e-08 63.9 66 51.5
Sc01g0003720 Simmondsia chinensis HOM05D004973 ORTHO05D006119 1.5e-08 63.9 73 58.9
CANSAT80G1895 Cannabis sativa HOM05D004973 ORTHO05D006119 2.0e-08 63.5 70 60.0
SGA_v2.0_scaffold35G14182 Striga asiatica HOM05D004973 ORTHO05D006119 2.0e-08 63.5 145 48.3
VMungo0720G0246 Vigna mungo HOM05D004973 ORTHO05D006119 2.0e-08 63.5 62 59.7
Lj2A104T80 Lonicera japonica HOM05D004973 ORTHO05D006119 2.6e-08 63.2 168 31.5
Peaxi162Scf00597g00824 Petunia axillaris HOM05D004973 ORTHO05D006119 2.6e-08 63.2 144 37.5
Cc06_g03330 Coffea canephora HOM05D004973 ORTHO05D006119 5.8e-08 62.0 154 36.4
Migut.L01647 Erythranthe guttata HOM05D004973 ORTHO05D006119 5.8e-08 62.0 61 60.7
Lj3A975T70 Lonicera japonica HOM05D004973 ORTHO05D006119 5.8e-08 62.0 62 59.7
MSTRG.19121 Avicennia marina HOM05D004973 ORTHO05D006119 7.6e-08 61.6 58 60.3
Sed0023997 Sechium edule HOM05D004973 ORTHO05D006119 7.6e-08 61.6 75 54.7
MELO3C009296.2 Cucumis melo HOM05D004973 ORTHO05D006119 1.7e-07 60.5 65 53.8
CsaV3_3G035290 Cucumis sativus L. HOM05D004973 ORTHO05D006119 1.7e-07 60.5 65 53.8
Oeu060067.1 Olea europaea HOM05D004973 ORTHO05D006119 1.7e-07 60.5 71 57.7
Solyc10g084420.2 Solanum lycopersicum HOM05D004973 ORTHO05D006119 1.7e-07 60.5 151 35.8
DCAR_014954 Daucus carota HOM05D000267 ORTHO05D000298 2.2e-07 60.1 64 56.2
Oeu029113.1 Olea europaea HOM05D004973 ORTHO05D006119 4.9e-07 58.9 65 56.9
CAN.G867.6 Capsicum annuum HOM05D004973 ORTHO05D006119 8.4e-07 58.2 51 64.7
Migut.J00395 Erythranthe guttata HOM05D004973 ORTHO05D006119 8.4e-07 58.2 69 49.3
Lalb_Chr02g0153461 Lupinus albus HOM05D004973 ORTHO05D006119 8.4e-07 58.2 77 51.9
Sopen10g033860 Solanum pennellii HOM05D004973 ORTHO05D006119 2.4e-06 56.6 151 31.1
vmacro20083 Vaccinium macrocarpon HOM05D004973 ORTHO05D006119 5.4e-06 55.5 66 53.0


User provided reference genes

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