Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 9.7e-104 380.2 196 100.0
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 8.3e-95 350.5 180 100.0
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 7.7e-93 344.0 196 91.3
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 1.3e-92 343.2 196 91.3
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 3.8e-84 315.1 180 90.6
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 6.0e-77 291.2 197 79.2
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 3.9e-76 288.5 196 79.6
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 5.0e-76 288.1 196 78.1
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 2.1e-74 282.7 189 79.9
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 5.2e-73 278.1 181 84.5
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 6.4e-71 271.2 176 80.1
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 2.1e-69 266.2 196 74.0
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 6.2e-66 254.6 204 72.1
Carub.0004s1962 Capsella rubella HOM05D005320 ORTHO05D008066 8.3e-63 244.2 178 72.5
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 1.1e-62 243.8 181 77.9
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 1.3e-60 236.9 196 69.9
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 5.4e-54 214.9 171 71.9
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 1.3e-34 150.6 174 52.9
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 9.6e-27 124.4 219 42.5
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 2.0e-24 116.7 210 44.3
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 3.9e-12 75.9 97 47.4
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 2.5e-11 73.2 239 30.1
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 9.7e-11 71.2 168 33.3
Carub.0006s0104 Capsella rubella HOM05D012592 ORTHO05D008066 1.3e-10 70.9 197 31.0
AL6G11430 Arabidopsis lyrata HOM05D012592 ORTHO05D008066 2.8e-10 69.7 192 31.8
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 3.7e-10 69.3 94 40.4
AT5G02200 Arabidopsis thaliana HOM05D012592 ORTHO05D008066 4.8e-10 68.9 191 29.8
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 4.8e-10 68.9 195 32.3
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 1.1e-09 67.8 94 41.5
Thhalv10015459m.g Eutrema salsugineum HOM05D012592 ORTHO05D008066 4.1e-09 65.9 186 31.7
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 5.3e-09 65.5 150 33.3
A10p33410 Brassica napus HOM05D012592 ORTHO05D008066 6.9e-09 65.1 182 32.4
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 6.9e-09 65.1 182 32.4
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 6.9e-09 65.1 150 33.3
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 6.9e-09 65.1 150 33.3
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 6.9e-09 65.1 176 34.1
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 9.1e-09 64.7 150 33.3
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 9.1e-09 64.7 137 36.5
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.2e-08 64.3 94 40.4
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.2e-08 64.3 94 40.4
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 1.5e-08 63.9 94 45.7
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 2.0e-08 63.5 152 33.6
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 2.6e-08 63.2 152 33.6
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 3.4e-08 62.8 127 40.9
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 4.5e-08 62.4 153 33.3
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 4.5e-08 62.4 93 41.9
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 4.5e-08 62.4 93 41.9
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 2.2e-07 60.1 94 41.5
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 2.2e-07 60.1 95 40.0
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 2.9e-07 59.7 58 63.8
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 3.8e-07 59.3 94 40.4
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 3.8e-07 59.3 86 48.8
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 5.0e-07 58.9 90 45.6
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 6.5e-07 58.5 107 39.3
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 8.5e-07 58.2 232 30.2
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 8.5e-07 58.2 94 37.2
Sp6g40240 Schrenkiella parvula HOM05D012592 ORTHO05D008066 8.5e-07 58.2 183 31.1
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 1.1e-06 57.8 93 41.9
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 1.4e-06 57.4 215 32.1
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 1.9e-06 57.0 94 41.5
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 1.9e-06 57.0 137 32.8
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 2.5e-06 56.6 91 42.9
ECA240G2574 Erigeron canadensis HOM05D007762 ORTHO05D008066 3.2e-06 56.2 183 31.7
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 5.5e-06 55.5 90 43.3
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 9.4e-06 54.7 229 31.9
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 9.4e-06 54.7 95 40.0


User provided reference genes

Program Settings