Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07499 Brassica carinata HOM05D005320 ORTHO05D007922 1.7e-125 452.6 216 100.0
BcaB06g29019 Brassica carinata HOM05D005320 ORTHO05D007922 1.0e-122 443.4 216 97.2
Sp4g20060 Schrenkiella parvula HOM05D005320 ORTHO05D007922 3.0e-122 441.8 216 96.8
AL4G34610 Arabidopsis lyrata HOM05D005320 ORTHO05D007922 1.9e-121 439.1 216 95.8
AT2G37680 Arabidopsis thaliana HOM05D005320 ORTHO05D007922 1.9e-121 439.1 216 95.8
Thhalv10017226m.g Eutrema salsugineum HOM05D005320 ORTHO05D007922 3.3e-121 438.3 216 95.8
BraA04t18363Z Brassica rapa HOM05D005320 ORTHO05D007922 2.2e-120 435.6 216 96.3
CARHR131860 Cardamine hirsuta HOM05D005320 ORTHO05D007922 1.8e-119 432.6 216 94.9
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 2.0e-118 429.1 203 100.0
Carub.0004s1963 Capsella rubella HOM05D005320 ORTHO05D007922 1.7e-117 426.0 216 93.5
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 1.4e-116 422.9 211 95.7
THA.LOC104823414 Tarenaya hassleriana HOM05D005320 ORTHO05D007922 2.1e-115 419.1 216 90.7
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.0e-114 416.8 214 93.0
Aa31sc70G70 Aethionema arabicum HOM05D005320 ORTHO05D007922 4.8e-112 407.9 217 90.8
Ciclev10012735m.g Citrus clementina HOM05D005320 ORTHO05D007922 1.5e-105 386.3 216 85.2
PGR031G0341 Punica granatum HOM05D005320 ORTHO05D007922 2.6e-105 385.6 216 83.8
Dinv35573 Davidia involucrata HOM05D005320 ORTHO05D007922 7.4e-105 384.0 216 83.3
GSVIVG01034127001 Vitis vinifera HOM05D005320 ORTHO05D007922 1.3e-104 383.3 216 82.9
Gohir.A04G083900 Gossypium hirsutum HOM05D005320 ORTHO05D007922 3.7e-104 381.7 216 83.3
Actinidia05326 Actinidia chinensis HOM05D005320 ORTHO05D007922 1.1e-103 380.2 216 82.4
Manes.09G092200 Manihot esculenta HOM05D005320 ORTHO05D007922 1.4e-103 379.8 216 82.4
Gohir.D04G122700 Gossypium hirsutum HOM05D005320 ORTHO05D007922 1.8e-103 379.4 216 82.9
QL07p030104 Quercus lobata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 215 82.8
QL07p030908 Quercus lobata HOM05D005320 ORTHO05D007922 1.8e-103 379.4 215 82.8
Thecc.05G035400 Theobroma cacao HOM05D005320 ORTHO05D007922 4.1e-103 378.3 217 83.4
Nn2g11189 Nelumbo nucifera HOM05D005320 ORTHO05D007922 5.3e-103 377.9 216 82.9
Rhsim05G0195000 Rhododendron simsii HOM05D005320 ORTHO05D007922 7.0e-103 377.5 216 82.4
Sc07g0007050 Simmondsia chinensis HOM05D005320 ORTHO05D007922 7.0e-103 377.5 214 82.2
ClCG04G008030 Citrullus lanatus HOM05D005320 ORTHO05D007922 9.1e-103 377.1 216 82.4
Lalb_Chr01g0013501 Lupinus albus HOM05D005320 ORTHO05D007922 1.2e-102 376.7 216 83.3
CSS0049441 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.6e-102 376.3 220 82.3
Nitab4.5_0000770g0150 Nicotiana tabacum HOM05D005320 ORTHO05D007922 1.6e-102 376.3 217 82.5
Gorai.012G105600 Gossypium raimondii HOM05D005320 ORTHO05D007922 2.0e-102 375.9 220 81.8
arahy.Tifrunner.gnm1.ann1.AE34S8 Arachis hypogaea HOM05D005320 ORTHO05D007922 2.6e-102 375.6 217 82.9
Hma1.2p1_1082F.1_g255150 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 2.6e-102 375.6 217 82.9
CiPaw.09G195900 Carya illinoinensis HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.9
MD04G1133400 Malus domestica HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 81.5
Prupe.6G259400 Prunus persica HOM05D005320 ORTHO05D007922 4.5e-102 374.8 216 82.4
Cc06_g02320 Coffea canephora HOM05D005320 ORTHO05D007922 5.9e-102 374.4 216 81.0
arahy.Tifrunner.gnm1.ann1.SHW8SI Arachis hypogaea HOM05D005320 ORTHO05D007922 7.7e-102 374.0 217 82.5
Glyma.03G068800 Glycine max HOM05D005320 ORTHO05D007922 7.7e-102 374.0 218 81.7
MSTRG.19072 Avicennia marina HOM05D005320 ORTHO05D007922 1.0e-101 373.6 216 80.6
Glyma.01G100200 Glycine max HOM05D005320 ORTHO05D007922 1.3e-101 373.2 218 81.7
MD12G1146200 Malus domestica HOM05D005320 ORTHO05D007922 1.3e-101 373.2 216 81.5
COL.COLO4_14757 Corchorus olitorius HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 81.5
CsaV3_4G025180 Cucumis sativus L. HOM05D005320 ORTHO05D007922 1.7e-101 372.9 216 81.5
Dinv37147 Davidia involucrata HOM05D005320 ORTHO05D007922 2.2e-101 372.5 238 75.6
PSO339G2759 Papaver somniferum HOM05D005320 ORTHO05D007922 3.8e-101 371.7 216 80.6
Aqoxy1G00876 Aquilegia oxysepala HOM05D005320 ORTHO05D007922 5.0e-101 371.3 219 80.4
PSO063G2683 Papaver somniferum HOM05D005320 ORTHO05D007922 1.1e-100 370.2 216 80.6
MBI05_g35634_MAGBIO Magnolia biondii HOM05D005320 ORTHO05D007922 1.5e-100 369.8 216 80.6
Ca_20076_v3 Cicer arietinum L. HOM05D005320 ORTHO05D007922 5.5e-100 367.9 218 80.3
SGA_v2.0_scaffold126G33759 Striga asiatica HOM05D005320 ORTHO05D007922 5.5e-100 367.9 216 79.2
Lj3g0008944 Lotus japonicus HOM05D005320 ORTHO05D007922 7.2e-100 367.5 216 80.6
vmacro20179 Vaccinium macrocarpon HOM05D005320 ORTHO05D007922 9.4e-100 367.1 232 76.3
CANSAT35G1431 Cannabis sativa HOM05D005320 ORTHO05D007922 1.2e-99 366.7 217 80.6
Psat7g239840 Pisum sativum HOM05D005320 ORTHO05D007922 1.6e-99 366.3 218 80.3
TWI74G0393 Tripterygium wilfordii HOM05D005320 ORTHO05D007922 2.7e-99 365.5 216 80.1
CAN.G324.16 Capsicum annuum HOM05D005320 ORTHO05D007922 3.6e-99 365.2 217 80.6
CDE06G1896 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 3.6e-99 365.2 216 78.2
VMungo0331G1509 Vigna mungo HOM05D005320 ORTHO05D007922 3.6e-99 365.2 211 81.0
CDE07G0950 Ceratophyllum demersum HOM05D005320 ORTHO05D007922 8.0e-99 364.0 216 78.2
TPR.G17890 Trifolium pratense HOM05D005320 ORTHO05D007922 1.0e-98 363.6 218 79.8
Lj3A964T54 Lonicera japonica HOM05D005320 ORTHO05D007922 2.3e-98 362.5 249 71.5
unitig_21.g21010 Utricularia gibba HOM05D005320 ORTHO05D007922 3.0e-98 362.1 216 78.2
Migut.J00304 Erythranthe guttata HOM05D005320 ORTHO05D007922 4.0e-98 361.7 216 77.8
Solyc10g084850.2 Solanum lycopersicum HOM05D005320 ORTHO05D007922 5.2e-98 361.3 217 80.2
PGSC0003DMG400011070 Solanum tuberosum HOM05D005320 ORTHO05D007922 5.2e-98 361.3 217 80.2
Atru.chr8.2015 Acer truncatum HOM05D005320 ORTHO05D007922 6.7e-98 360.9 217 80.2
Sopen10g034290 Solanum pennellii HOM05D005320 ORTHO05D007922 8.8e-98 360.5 217 80.2
Medtr4g020460 Medicago truncatula HOM05D005320 ORTHO05D007922 1.1e-97 360.1 218 78.9
HanXRQChr13g0406901 Helianthus annuus HOM05D005320 ORTHO05D007922 2.0e-97 359.4 216 79.2
Sed0022090 Sechium edule HOM05D005320 ORTHO05D007922 2.0e-97 359.4 216 80.6
Lsat_1_v5_gn_5_153940 Lactuca sativa HOM05D005320 ORTHO05D007922 2.6e-97 359.0 216 79.2
RcHm_v2.0_Chr3g0466041 Rosa chinensis HOM05D005320 ORTHO05D007922 9.7e-97 357.1 217 79.3
Potri.016G100600 Populus trichocarpa HOM05D005320 ORTHO05D007922 2.8e-96 355.5 226 76.1
FAN02G2927 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.4e-95 353.2 217 78.3
ECA248G2752 Erigeron canadensis HOM05D005320 ORTHO05D007922 2.4e-95 352.4 216 77.8
FvH4_6g13220 Fragaria vesca HOM05D005320 ORTHO05D007922 3.1e-95 352.1 217 77.9
TAR623G0888 Trochodendron aralioides HOM05D005320 ORTHO05D007922 7.0e-95 350.9 201 81.1
Os03g0679000 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.2e-94 350.1 219 76.3
Peaxi162Scf00094g00911 Petunia axillaris HOM05D005320 ORTHO05D007922 1.2e-94 350.1 186 86.0
HPP92_026786 Vanilla planifolia HOM05D005320 ORTHO05D007922 8.5e-93 344.0 202 77.2
DCAR_012114 Daucus carota HOM05D005320 ORTHO05D007922 1.1e-92 343.6 221 76.0
FAN14G1919 Fragaria x ananassa HOM05D005320 ORTHO05D007922 1.5e-92 343.2 201 80.6
Os01g0144200 Oryza sativa ssp. japonica HOM05D005320 ORTHO05D007922 1.5e-92 343.2 219 74.4
Eucgr.K01475 Eucalyptus grandis HOM05D005320 ORTHO05D007922 5.5e-92 341.3 242 70.7
Oeu007799.1 Olea europaea HOM05D005320 ORTHO05D007922 2.1e-91 339.3 182 84.6
CSS0000536 Camellia sinensis var. sinensis HOM05D005320 ORTHO05D007922 1.0e-90 337.0 197 80.7
AUR62043523 Chenopodium quinoa HOM05D005320 ORTHO05D007922 3.0e-90 335.5 180 85.6
AUR62042382 Chenopodium quinoa HOM05D005320 ORTHO05D007922 4.0e-90 335.1 178 86.0
Phvul.010G015600 Phaseolus vulgaris HOM05D005320 ORTHO05D007922 4.0e-90 335.1 189 83.1
Duzib128G0467 Durio zibethinus HOM05D005320 ORTHO05D007922 1.2e-89 333.6 189 82.5
Nitab4.5_0005100g0070 Nicotiana tabacum HOM05D005320 ORTHO05D007922 2.8e-88 328.9 191 81.2
RcHm_v2.0_Chr3g0466001 Rosa chinensis HOM05D005320 ORTHO05D007922 4.8e-88 328.2 199 78.9
FAN05G0090 Fragaria x ananassa HOM05D005320 ORTHO05D007922 8.3e-88 327.4 191 79.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.6e-86 323.2 191 80.1
Duzib093G0721 Durio zibethinus HOM05D005320 ORTHO05D007922 3.8e-85 318.5 190 80.5
Zm00001eb124510 Zea mays HOM05D005320 ORTHO05D007922 2.7e-83 312.4 193 75.6
ATR0559G120 Amborella trichopoda HOM05D005320 ORTHO05D007922 8.0e-83 310.8 208 70.7
Mapoly0038s0068 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.8e-82 309.7 198 69.7
SMO356G0269 Selaginella moellendorffii HOM05D005320 ORTHO05D007922 3.4e-81 305.4 198 69.2
Pp3c6_13830 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.1e-79 300.4 217 63.6
AagrBONN_evm.TU.Sc2ySwM_117.2668 Anthoceros agrestis HOM05D005320 ORTHO05D007922 2.0e-78 296.2 188 68.6
Zm00001eb335820 Zea mays HOM05D005320 ORTHO05D007922 2.6e-73 279.3 145 86.2
Cpa.g.c45575 Carica papaya HOM05D005320 ORTHO05D007922 7.5e-73 277.7 145 86.9
Hma1.2p1_0936F.1_g239015 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.5e-73 277.7 171 77.8
Hma1.2p1_1082F.1_g255160 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 7.5e-73 277.7 171 77.8
CBR_g30417 Chara braunii HOM05D005320 ORTHO05D007922 1.0e-69 267.3 191 63.4
EL10As1g23111 Beta vulgaris HOM05D005320 ORTHO05D007922 1.6e-67 260.0 133 88.7
Sabra16G0101600 Salix brachista HOM05D005320 ORTHO05D007922 4.4e-65 251.9 133 85.0
RcHm_v2.0_Chr3g0465971 Rosa chinensis HOM05D005320 ORTHO05D007922 5.4e-63 245.0 133 82.7
HPP92_000741 Vanilla planifolia HOM05D005320 ORTHO05D007922 1.5e-60 236.9 130 80.8
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 4.4e-57 225.3 122 81.1
RcHm_v2.0_Chr3g0465901 Rosa chinensis HOM05D005320 ORTHO05D007922 9.5e-52 207.6 143 69.2
Hma1.2p1_1082F.1_g255140 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 6.2e-51 204.9 125 77.6
Hma1.2p1_0766F.1_g215380 Hydrangea macrophylla HOM05D005320 ORTHO05D007922 1.5e-41 173.7 107 78.5
HPP92_000739 Vanilla planifolia HOM05D005320 ORTHO05D007922 4.2e-39 165.6 93 81.7
RcHm_v2.0_Chr3g0465921 Rosa chinensis HOM05D005320 ORTHO05D007922 3.9e-37 159.1 89 80.9
EL10As1g23112 Beta vulgaris HOM05D005320 ORTHO05D007922 2.1e-27 126.7 87 72.4
Haze_20831 Corylus avellana HOM05D000026 ORTHO05D000094 5.3e-26 122.1 83 74.7
Cre17.g744497 Chlamydomonas reinhardtii HOM05D005320 ORTHO05D007922 7.6e-25 118.2 216 33.3
Mapoly0050s0129 Marchantia polymorpha HOM05D005320 ORTHO05D007922 1.6e-22 110.5 231 32.9
MELO3C003145.2 Cucumis melo HOM05D000231 ORTHO05D000132 7.9e-14 81.6 41 87.8
RcHm_v2.0_Chr7g0189661 Rosa chinensis HOM05D005320 ORTHO05D007922 9.6e-12 74.7 41 78.0
RcHm_v2.0_Chr4g0436891 Rosa chinensis HOM05D005320 ORTHO05D007922 6.9e-10 68.6 64 56.2
Pp3c27_5960 Physcomitrium patens HOM05D005320 ORTHO05D007922 1.2e-06 57.8 42 59.5


User provided reference genes

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