Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 3.9e-38 161.0 83 100.0
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 3.9e-38 161.0 83 100.0
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.1e-37 159.5 83 98.8
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 7.4e-29 130.2 83 83.1
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 3.7e-28 127.9 81 81.5
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 3.7e-28 127.9 83 80.7
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 3.7e-28 127.9 83 80.7
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 1.7e-25 119.0 83 77.1
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 1.2e-23 112.8 81 75.3
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 1.2e-23 112.8 81 75.3
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 1.6e-23 112.5 81 74.1
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 2.1e-23 112.1 83 71.1
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 3.6e-23 111.3 81 74.1
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 8.8e-22 106.7 83 74.7
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 8.8e-22 106.7 83 74.7
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 8.8e-22 106.7 83 74.7
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 8.8e-22 106.7 83 74.7
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 1.1e-21 106.3 83 72.3
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 2.0e-21 105.5 84 69.0
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 2.0e-21 105.5 86 68.6
AL4G34680 Arabidopsis lyrata HOM05D009505 ORTHO05D007552 3.3e-21 104.8 84 70.2
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 1.2e-18 96.3 83 65.1
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 3.5e-18 94.7 81 65.4
BraA03t11324Z Brassica rapa HOM05D009505 ORTHO05D007552 8.0e-15 83.6 86 62.8
A03p20830 Brassica napus HOM05D009505 ORTHO05D007552 3.0e-14 81.6 86 61.6
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 8.8e-14 80.1 69 65.2
BcaC02g11899 Brassica carinata HOM05D009505 ORTHO05D007552 9.8e-13 76.6 88 55.7
BcaC02g11900 Brassica carinata HOM05D009505 ORTHO05D007552 2.8e-12 75.1 51 76.5
BcaC02g11902 Brassica carinata HOM05D009505 ORTHO05D007552 2.8e-12 75.1 51 76.5
BolC4t22617H Brassica oleracea HOM05D009505 ORTHO05D007552 2.8e-12 75.1 51 76.5
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 6.3e-12 73.9 86 50.0
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.6e-10 69.3 92 44.6
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.6e-10 69.3 86 48.8
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 4.5e-10 67.8 94 47.9
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 7.7e-10 67.0 78 50.0
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 7.7e-10 67.0 85 44.7
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.0e-09 66.6 93 43.0
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.7e-09 65.9 88 44.3
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 3.8e-09 64.7 93 44.1
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 8.5e-09 63.5 89 41.6
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.5e-08 62.0 88 44.3
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.5e-08 62.0 93 45.2
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 3.2e-08 61.6 94 43.6
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 5.5e-08 60.8 97 47.4
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 5.5e-08 60.8 92 41.3
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 7.2e-08 60.5 92 40.2
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 9.4e-08 60.1 87 42.5
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 9.4e-08 60.1 87 44.8
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 9.4e-08 60.1 87 44.8
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 1.2e-07 59.7 88 39.8
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 1.6e-07 59.3 89 38.2
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 2.1e-07 58.9 93 40.9
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.7e-07 58.5 89 46.1
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 2.7e-07 58.5 85 45.9
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 3.6e-07 58.2 84 42.9
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 4.7e-07 57.8 97 41.2
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 4.7e-07 57.8 92 38.0
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 4.7e-07 57.8 93 43.0
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 6.1e-07 57.4 92 40.2
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.1e-07 57.4 94 42.6
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 1.0e-06 56.6 98 46.9
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 1.0e-06 56.6 90 43.3
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 1.4e-06 56.2 91 45.1
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 1.8e-06 55.8 87 41.4
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.3e-06 55.5 86 39.5
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 2.3e-06 55.5 94 41.5
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 4.0e-06 54.7 83 37.3
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 5.2e-06 54.3 94 38.3
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 5.2e-06 54.3 85 45.9


User provided reference genes

Program Settings