Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07356 Brassica carinata HOM05D002733 ORTHO05D003856 2.4e-142 508.8 258 100.0
A04p30010 Brassica napus HOM05D002733 ORTHO05D003856 6.1e-130 467.6 261 92.7
BraA04t18506Z Brassica rapa HOM05D002733 ORTHO05D003856 6.1e-130 467.6 261 92.7
BolC4t28286H Brassica oleracea HOM05D002733 ORTHO05D003856 3.0e-129 465.3 271 89.3
BcaB06g29131 Brassica carinata HOM05D002733 ORTHO05D003856 6.0e-101 371.3 263 77.6
Sp4g22450 Schrenkiella parvula HOM05D002733 ORTHO05D003856 9.3e-62 241.1 259 53.7
Sp5g18240 Schrenkiella parvula HOM05D002733 ORTHO05D003856 7.6e-56 221.5 199 59.8
BcaB02g09048 Brassica carinata HOM05D002733 ORTHO05D003856 5.5e-54 215.3 253 49.0
BolC4t22351H Brassica oleracea HOM05D002733 ORTHO05D003856 5.1e-52 208.8 253 48.6
C04p07280 Brassica napus HOM05D002733 ORTHO05D003856 6.7e-52 208.4 253 48.6
A05p06330 Brassica napus HOM05D002733 ORTHO05D003856 8.7e-52 208.0 254 48.0
BcaC02g12127 Brassica carinata HOM05D002733 ORTHO05D003856 1.9e-51 206.8 253 48.6
Thhalv10017517m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 3.3e-51 206.1 269 50.6
BraA05t19601Z Brassica rapa HOM05D002733 ORTHO05D003856 3.7e-50 202.6 254 48.4
AL4G37790 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 5.7e-43 178.7 174 55.2
Sp4g22050 Schrenkiella parvula HOM05D002733 ORTHO05D003856 3.7e-42 176.0 182 54.9
AT4G03170 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.9e-39 166.4 245 44.1
BcaC01g05431 Brassica carinata HOM05D002733 ORTHO05D003856 1.4e-38 164.1 263 43.0
C03p26370 Brassica napus HOM05D002733 ORTHO05D003856 1.4e-38 164.1 174 52.9
BraA03t11459Z Brassica rapa HOM05D002733 ORTHO05D003856 1.4e-38 164.1 171 53.8
BolC3t15022H Brassica oleracea HOM05D002733 ORTHO05D003856 2.5e-38 163.3 176 51.7
A03p22270 Brassica napus HOM05D002733 ORTHO05D003856 5.5e-38 162.2 171 53.2
AL7G49890 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.6e-37 160.6 209 48.3
C03p26740 Brassica napus HOM05D002733 ORTHO05D003856 2.1e-37 160.2 263 42.6
BolC3t15059H Brassica oleracea HOM05D002733 ORTHO05D003856 2.1e-37 160.2 263 42.6
AL8G24310 Arabidopsis lyrata HOM05D002733 ORTHO05D003856 1.8e-36 157.1 257 44.7
CARHR135120 Cardamine hirsuta HOM05D002733 ORTHO05D003856 1.1e-35 154.5 185 48.1
AT4G03160 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 2.5e-35 153.3 130 60.8
Aa31LG7G1520 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.8e-34 149.1 164 50.0
Aa31LG3G6410 Aethionema arabicum HOM05D002733 ORTHO05D003856 9.1e-33 144.8 176 49.4
Aa31LG8G11380 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.9e-32 142.1 188 46.3
Aa31LG8G17140 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.9e-30 137.1 176 47.7
Sp4g22040 Schrenkiella parvula HOM05D010480 ORTHO05D003856 2.5e-30 136.7 172 46.5
THA.LOC104810048 Tarenaya hassleriana HOM05D002733 ORTHO05D003856 5.5e-30 135.6 187 43.3
AT1G20600 Arabidopsis thaliana HOM05D002733 ORTHO05D003856 9.4e-30 134.8 214 44.4
Thhalv10003384m.g Eutrema salsugineum HOM05D002733 ORTHO05D003856 9.4e-30 134.8 151 46.4
Aa31LG7G1530 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-29 134.4 184 45.7
Aa31LG8G17220 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.2e-29 134.4 202 41.6
Aa31LG8G17210 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.0e-28 129.8 120 54.2
BcaC01g05470 Brassica carinata HOM05D002733 ORTHO05D003856 1.5e-27 127.5 174 46.0
Aa31LG8G17150 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.6e-27 126.7 137 51.8
Aa31LG8G17170 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.4e-27 125.9 180 45.6
Aa31LG8G17160 Aethionema arabicum HOM05D002733 ORTHO05D003856 5.7e-27 125.6 189 44.4
Carub.0003s2754 Capsella rubella HOM05D002733 ORTHO05D003856 2.2e-26 123.6 117 53.8
Carub.0004s2232 Capsella rubella HOM05D002733 ORTHO05D003856 2.8e-26 123.2 240 39.2
Aa31LG7G1600 Aethionema arabicum HOM05D002733 ORTHO05D003856 6.3e-26 122.1 176 43.8
Aa31LG7G1540 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-25 120.6 199 42.2
Aa31LG8G17200 Aethionema arabicum HOM05D002733 ORTHO05D003856 3.1e-25 119.8 118 54.2
Aa31LG7G1590 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.0e-24 117.1 196 41.3
Aa31LG8G17190 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.2e-23 113.6 152 43.4
Aa31LG7G1510 Aethionema arabicum HOM05D002733 ORTHO05D003856 2.9e-23 113.2 174 42.0
A05p06650 Brassica napus HOM05D010480 ORTHO05D003856 6.5e-23 112.1 170 41.8
BraA05t19631Z Brassica rapa HOM05D010480 ORTHO05D003856 6.5e-23 112.1 170 41.8
A05p06660 Brassica napus HOM05D010480 ORTHO05D003856 2.5e-22 110.2 188 39.9
BraA05t19632Z Brassica rapa HOM05D010480 ORTHO05D003856 4.2e-22 109.4 188 39.9
CARHR135110 Cardamine hirsuta HOM05D002733 ORTHO05D003856 7.2e-22 108.6 145 48.3
FvH4_5g06160 Fragaria vesca HOM05D002733 ORTHO05D003856 2.7e-21 106.7 128 42.2
FAN13G0375 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-21 106.7 128 42.2
FAN18G0094 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.7e-21 106.7 128 42.2
BcaC02g12109 Brassica carinata HOM05D010480 ORTHO05D003856 6.1e-21 105.5 178 39.3
BolC4t22394H Brassica oleracea HOM05D010480 ORTHO05D003856 6.1e-21 105.5 178 39.3
Prupe.7G223800 Prunus persica HOM05D002733 ORTHO05D003856 8.0e-21 105.1 124 41.9
Aa31LG7G1550 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.0e-20 104.8 172 40.7
RcHm_v2.0_Chr7g0192641 Rosa chinensis HOM05D002733 ORTHO05D003856 1.0e-20 104.8 127 40.9
Aa31LG6G10180 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-20 104.0 180 42.2
C04p07770 Brassica napus HOM05D010480 ORTHO05D003856 1.8e-20 104.0 180 38.3
Prupe.7G223900 Prunus persica HOM05D002733 ORTHO05D003856 1.8e-20 104.0 124 40.3
C04p07760 Brassica napus HOM05D010480 ORTHO05D003856 2.3e-20 103.6 215 36.3
BolC4t22393H Brassica oleracea HOM05D010480 ORTHO05D003856 2.3e-20 103.6 215 36.3
Haze_23259 Corylus avellana HOM05D002733 ORTHO05D003856 4.0e-20 102.8 177 35.0
RcHm_v2.0_Chr2g0120751 Rosa chinensis HOM05D002733 ORTHO05D003856 4.0e-20 102.8 114 45.6
Cfa009897 Carpinus fangiana HOM05D002733 ORTHO05D003856 6.7e-20 102.1 180 33.9
BcaC02g12110 Brassica carinata HOM05D010480 ORTHO05D003856 8.8e-20 101.7 226 34.1
BolC4t22395H Brassica oleracea HOM05D010480 ORTHO05D003856 1.1e-19 101.3 171 38.6
Aa31LG7G1580 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.5e-19 100.9 113 52.2
FAN26G1179 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.0e-19 100.5 124 41.1
FAN28G1642 Fragaria x ananassa HOM05D000949 ORTHO05D001276 3.3e-19 99.8 124 41.1
BcaB02g09089 Brassica carinata HOM05D010480 ORTHO05D003856 4.4e-19 99.4 178 37.6
A05p06630 Brassica napus HOM05D010480 ORTHO05D003856 4.4e-19 99.4 259 32.4
FvH4_1g24261 Fragaria vesca HOM05D002733 ORTHO05D003856 4.4e-19 99.4 124 41.1
BcaC02g12108 Brassica carinata HOM05D010480 ORTHO05D003856 5.7e-19 99.0 174 39.1
C04p07780 Brassica napus HOM05D010480 ORTHO05D003856 5.7e-19 99.0 174 39.1
BraA05t19630Z Brassica rapa HOM05D010480 ORTHO05D003856 5.7e-19 99.0 264 33.0
COL.COLO4_34789 Corchorus olitorius HOM05D002733 ORTHO05D003856 7.5e-19 98.6 124 41.1
FAN23G1126 Fragaria x ananassa HOM05D002733 ORTHO05D003856 7.5e-19 98.6 110 44.5
Manes.03G176200 Manihot esculenta HOM05D002733 ORTHO05D003856 2.2e-18 97.1 124 40.3
MD00G1107900 Malus domestica HOM05D002733 ORTHO05D003856 3.7e-18 96.3 118 41.5
Rhsim05G0042200 Rhododendron simsii HOM05D002733 ORTHO05D003856 3.7e-18 96.3 119 40.3
Sabra16G0260100 Salix brachista HOM05D002733 ORTHO05D003856 3.7e-18 96.3 161 37.3
FAN19G2118 Fragaria x ananassa HOM05D002733 ORTHO05D003856 4.8e-18 95.9 136 36.0
Manes.03G176000 Manihot esculenta HOM05D002733 ORTHO05D003856 6.3e-18 95.5 124 40.3
MD02G1059300 Malus domestica HOM05D002733 ORTHO05D003856 1.8e-17 94.0 131 35.9
CiPaw.03G015000 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.4e-17 93.6 181 30.9
DCAR_014131 Daucus carota HOM05D002733 ORTHO05D003856 2.4e-17 93.6 198 33.8
Gorai.010G075000 Gossypium raimondii HOM05D002733 ORTHO05D003856 2.4e-17 93.6 124 37.9
Actinidia20408 Actinidia chinensis HOM05D002733 ORTHO05D003856 3.1e-17 93.2 130 40.0
CSS0001293 Camellia sinensis var. sinensis HOM05D002733 ORTHO05D003856 3.1e-17 93.2 123 38.2
CiPaw.03G014700 Carya illinoinensis HOM05D002733 ORTHO05D003856 3.1e-17 93.2 108 40.7
MD15G1316300 Malus domestica HOM05D002733 ORTHO05D003856 4.1e-17 92.8 118 38.1
CiPaw.03G015300 Carya illinoinensis HOM05D002733 ORTHO05D003856 5.3e-17 92.4 181 32.0
DCAR_003268 Daucus carota HOM05D002733 ORTHO05D003856 5.3e-17 92.4 123 40.7
FvH4_1g16231 Fragaria vesca HOM05D002733 ORTHO05D003856 5.3e-17 92.4 138 35.5
Gohir.D06G064250 Gossypium hirsutum HOM05D002733 ORTHO05D003856 7.0e-17 92.0 124 37.9
Potri.001G397100 Populus trichocarpa HOM05D002733 ORTHO05D003856 7.0e-17 92.0 190 32.1
Duzib168G2229 Durio zibethinus HOM05D002733 ORTHO05D003856 9.1e-17 91.7 124 38.7
Hma1.2p1_1080F.1_g255020 Hydrangea macrophylla HOM05D002733 ORTHO05D003856 9.1e-17 91.7 110 42.7
Prupe.7G224000 Prunus persica HOM05D002733 ORTHO05D003856 9.1e-17 91.7 111 44.1
Thecc.09G104200 Theobroma cacao HOM05D002733 ORTHO05D003856 9.1e-17 91.7 117 41.0
Actinidia09441 Actinidia chinensis HOM05D002733 ORTHO05D003856 1.2e-16 91.3 116 39.7
DCAR_028226 Daucus carota HOM05D002733 ORTHO05D003856 1.2e-16 91.3 117 41.9
Cpa.g.sc81.85 Carica papaya HOM05D002733 ORTHO05D003856 1.6e-16 90.9 127 37.8
DCAR_003269 Daucus carota HOM05D002733 ORTHO05D003856 1.6e-16 90.9 118 40.7
FAN23G1485 Fragaria x ananassa HOM05D002733 ORTHO05D003856 1.6e-16 90.9 154 31.8
BolC3t19780H Brassica oleracea HOM05D010480 ORTHO05D003856 2.0e-16 90.5 150 42.0
Gohir.A06G065650 Gossypium hirsutum HOM05D002733 ORTHO05D003856 2.0e-16 90.5 112 40.2
Peaxi162Scf00023g00136 Petunia axillaris HOM05D002733 ORTHO05D003856 2.0e-16 90.5 136 38.2
Duzib213G0038 Durio zibethinus HOM05D002733 ORTHO05D003856 4.5e-16 89.4 239 31.8
TPR.G8024 Trifolium pratense HOM05D002733 ORTHO05D003856 4.5e-16 89.4 109 39.4
MELO3C004101.2 Cucumis melo HOM05D002733 ORTHO05D003856 5.9e-16 89.0 110 41.8
Nitab4.5_0000316g0140 Nicotiana tabacum HOM05D002733 ORTHO05D003856 5.9e-16 89.0 123 38.2
TPR.G12039 Trifolium pratense HOM05D002733 ORTHO05D003856 1.7e-15 87.4 110 38.2
CsaV3_3G004840 Cucumis sativus L. HOM05D002733 ORTHO05D003856 2.9e-15 86.7 110 40.9
Nitab4.5_0001888g0040 Nicotiana tabacum HOM05D002733 ORTHO05D003856 3.8e-15 86.3 112 40.2
QL02p042807 Quercus lobata HOM05D002733 ORTHO05D003856 5.0e-15 85.9 132 37.1
Sed0022151 Sechium edule HOM05D002733 ORTHO05D003856 5.0e-15 85.9 110 39.1
Ciclev10010395m.g Citrus clementina HOM05D002733 ORTHO05D003856 6.5e-15 85.5 112 41.1
QL02p042555 Quercus lobata HOM05D002733 ORTHO05D003856 6.5e-15 85.5 132 37.1
VMungo1080G0152 Vigna mungo HOM05D002733 ORTHO05D003856 6.5e-15 85.5 111 40.5
CAN.G1774.3 Capsicum annuum HOM05D002733 ORTHO05D003856 8.5e-15 85.1 111 37.8
Thecc.07G171000 Theobroma cacao HOM05D002733 ORTHO05D003856 1.1e-14 84.7 181 34.8
TPR.G1412 Trifolium pratense HOM05D002733 ORTHO05D003856 1.5e-14 84.3 109 40.4
Ciclev10007038m.g Citrus clementina HOM05D002733 ORTHO05D003856 1.9e-14 84.0 130 35.4
Duzib213G1035 Durio zibethinus HOM05D002733 ORTHO05D003856 1.9e-14 84.0 230 31.7
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.5e-14 83.6 109 40.4
VMungo1080G0686 Vigna mungo HOM05D002733 ORTHO05D003856 7.2e-14 82.0 114 38.6
CiPaw.03G014800 Carya illinoinensis HOM05D002733 ORTHO05D003856 1.2e-13 81.3 182 32.4
Eucgr.L02178 Eucalyptus grandis HOM05D002733 ORTHO05D003856 2.1e-13 80.5 111 38.7
Medtr3g013820 Medicago truncatula HOM05D002733 ORTHO05D003856 2.1e-13 80.5 176 34.7
Lj3g0006952 Lotus japonicus HOM05D002733 ORTHO05D003856 2.7e-13 80.1 110 40.0
Medtr0267s0030 Medicago truncatula HOM05D002733 ORTHO05D003856 3.6e-13 79.7 176 34.7
Medtr3g013900 Medicago truncatula HOM05D002733 ORTHO05D003856 8.0e-13 78.6 189 33.3
Medtr3g013920 Medicago truncatula HOM05D002733 ORTHO05D003856 8.0e-13 78.6 189 33.3
Sed0027145 Sechium edule HOM05D002733 ORTHO05D003856 8.0e-13 78.6 110 40.9
Medtr3g013810 Medicago truncatula HOM05D002733 ORTHO05D003856 1.4e-12 77.8 189 33.3
QL01p018935 Quercus lobata HOM05D002733 ORTHO05D003856 2.3e-12 77.0 138 34.1
Lj1g0000886 Lotus japonicus HOM05D002733 ORTHO05D003856 3.0e-12 76.6 135 34.8
Aqoxy1G01498 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 5.2e-12 75.9 144 34.7
TPR.G1395 Trifolium pratense HOM05D002733 ORTHO05D003856 5.2e-12 75.9 110 36.4
QL01p018928 Quercus lobata HOM05D002733 ORTHO05D003856 8.8e-12 75.1 114 34.2
COL.COLO4_32232 Corchorus olitorius HOM05D002733 ORTHO05D003856 4.4e-11 72.8 122 35.2
Eucgr.C01014 Eucalyptus grandis HOM05D002733 ORTHO05D003856 9.8e-11 71.6 121 36.4
MD02G1060300 Malus domestica HOM05D002733 ORTHO05D003856 9.8e-11 71.6 104 39.4
Sed0017653 Sechium edule HOM05D002733 ORTHO05D003856 2.2e-10 70.5 117 35.0
PGSC0003DMG400000368 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.2e-10 70.5 237 32.5
Phvul.005G028900 Phaseolus vulgaris HOM05D002733 ORTHO05D003856 4.8e-10 69.3 111 36.0
Aqoxy7G01497 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 8.3e-10 68.6 128 35.2
Aa31LG8G17180 Aethionema arabicum HOM05D002733 ORTHO05D003856 1.8e-09 67.4 53 54.7
PSO566G0305 Papaver somniferum HOM05D002733 ORTHO05D003856 1.8e-09 67.4 107 38.3
QL01p018939 Quercus lobata HOM05D002733 ORTHO05D003856 1.8e-09 67.4 208 30.3
Peaxi162Scf00665g00148 Petunia axillaris HOM05D002733 ORTHO05D003856 2.4e-09 67.0 118 32.2
Prupe.7G224100 Prunus persica HOM05D002733 ORTHO05D003856 2.4e-09 67.0 110 34.5
ATR1159G057 Amborella trichopoda HOM05D020218 ORTHO05D013427 3.1e-09 66.6 108 37.0
Aa31LG6G9550 Aethionema arabicum HOM05D002733 ORTHO05D003856 4.1e-09 66.2 73 47.9
CiPaw.03G015100 Carya illinoinensis HOM05D002733 ORTHO05D003856 2.0e-08 63.9 156 33.3
Aqoxy2G03580 Aquilegia oxysepala HOM05D002733 ORTHO05D003856 3.5e-08 63.2 107 33.6
BolC4t22940H Brassica oleracea HOM05D002733 ORTHO05D003856 5.9e-08 62.4 59 52.5
Sabra08G0161200 Salix brachista HOM05D002733 ORTHO05D003856 5.9e-08 62.4 124 29.8
BcaB02g09091 Brassica carinata HOM05D010480 ORTHO05D003856 7.7e-08 62.0 60 48.3
Peaxi162Scf00665g00126 Petunia axillaris HOM05D002733 ORTHO05D003856 7.7e-08 62.0 90 34.4
Dinv41650 Davidia involucrata HOM05D002733 ORTHO05D003856 1.3e-07 61.2 86 41.9
Peaxi162Scf00665g00139 Petunia axillaris HOM05D002733 ORTHO05D003856 1.3e-07 61.2 174 29.3
FAN19G0693 Fragaria x ananassa HOM05D002733 ORTHO05D003856 2.2e-07 60.5 65 47.7
PGSC0003DMG400000371 Solanum tuberosum HOM05D002733 ORTHO05D003856 2.9e-07 60.1 112 32.1
Nitab4.5_0005564g0030 Nicotiana tabacum HOM05D002733 ORTHO05D003856 8.5e-07 58.5 110 31.8


User provided reference genes

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