Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07354 Brassica carinata HOM05D003761 ORTHO05D004412 5.0e-93 344.4 167 100.0
BolC4t28284H Brassica oleracea HOM05D003761 ORTHO05D004412 5.8e-89 330.9 167 96.4
A04p30050 Brassica napus HOM05D003761 ORTHO05D004412 3.0e-85 318.5 168 92.9
BraA04t18501Z Brassica rapa HOM05D003761 ORTHO05D004412 6.6e-85 317.4 168 92.3
BcaB02g09050 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-77 293.5 163 84.7
BcaB02g09051 Brassica carinata HOM05D003761 ORTHO05D004412 1.0e-77 293.5 167 85.0
Sp4g22430 Schrenkiella parvula HOM05D003761 ORTHO05D004412 1.0e-77 293.5 171 81.9
BolC4t22355H Brassica oleracea HOM05D003761 ORTHO05D004412 3.9e-77 291.6 171 82.5
BraA05t19604Z Brassica rapa HOM05D003761 ORTHO05D004412 3.9e-77 291.6 171 82.5
A05p06360 Brassica napus HOM05D003761 ORTHO05D004412 8.6e-77 290.4 171 81.9
BcaB06g29129 Brassica carinata HOM05D003761 ORTHO05D004412 2.8e-75 285.4 169 83.4
Thhalv10017342m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.4e-74 282.3 153 84.3
Carub.0004s2229 Capsella rubella HOM05D003761 ORTHO05D004412 8.4e-72 273.9 169 78.7
AT2G40113 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.9e-69 265.0 170 76.5
AL4G37770 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.5e-68 263.1 172 75.6
CARHR135090 Cardamine hirsuta HOM05D003761 ORTHO05D004412 6.9e-66 254.2 161 75.2
AT5G47635 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.1e-50 202.2 169 63.3
Thhalv10001056m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 5.3e-50 201.4 170 62.4
Sp2g12340 Schrenkiella parvula HOM05D003761 ORTHO05D004412 3.4e-49 198.7 168 61.9
Aa31LG9G5380 Aethionema arabicum HOM05D003761 ORTHO05D004412 7.6e-49 197.6 173 61.3
AL8G10320 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.3e-48 196.8 169 62.1
A06p44900 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-48 196.8 169 62.7
C04p67800 Brassica napus HOM05D003761 ORTHO05D004412 1.3e-48 196.8 96 96.9
BolC7t43669H Brassica oleracea HOM05D003761 ORTHO05D004412 2.2e-48 196.1 160 65.6
BcaC04g21612 Brassica carinata HOM05D003761 ORTHO05D004412 8.4e-48 194.1 168 62.5
C09p29870 Brassica napus HOM05D003761 ORTHO05D004412 8.4e-48 194.1 168 62.5
BraA06t27361Z Brassica rapa HOM05D003761 ORTHO05D004412 8.4e-48 194.1 169 62.1
Carub.0008s0015 Capsella rubella HOM05D003761 ORTHO05D004412 1.4e-47 193.4 168 61.9
A09p23140 Brassica napus HOM05D003761 ORTHO05D004412 3.2e-47 192.2 161 62.7
BraA09t37917Z Brassica rapa HOM05D003761 ORTHO05D004412 3.2e-47 192.2 161 62.7
CARHR173680 Cardamine hirsuta HOM05D003761 ORTHO05D004412 4.2e-47 191.8 160 64.4
C07p31280 Brassica napus HOM05D003761 ORTHO05D004412 9.3e-47 190.7 176 60.2
BcaC06g31357 Brassica carinata HOM05D003761 ORTHO05D004412 1.2e-46 190.3 166 62.7
Aa31LG5G19480 Aethionema arabicum HOM05D003761 ORTHO05D004412 2.5e-44 182.6 143 63.6
BcaB07g30768 Brassica carinata HOM05D003761 ORTHO05D004412 4.3e-44 181.8 140 65.7
Thhalv10026465m.g Eutrema salsugineum HOM05D003761 ORTHO05D004412 2.6e-41 172.6 147 58.5
THA.LOC104806736 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 1.1e-39 167.2 158 57.0
BcaC06g34236 Brassica carinata HOM05D003761 ORTHO05D004412 2.7e-38 162.5 154 59.1
BraA01t01941Z Brassica rapa HOM05D003761 ORTHO05D004412 2.7e-38 162.5 144 57.6
BcaNung03472 Brassica carinata HOM05D003761 ORTHO05D004412 1.4e-37 160.2 154 52.6
CARHR223820 Cardamine hirsuta HOM05D003761 ORTHO05D004412 1.8e-37 159.8 152 55.3
BcaC09g50449 Brassica carinata HOM05D003761 ORTHO05D004412 6.7e-37 157.9 147 55.8
C01p25300 Brassica napus HOM05D003761 ORTHO05D004412 6.7e-37 157.9 147 55.8
BolC1t02480H Brassica oleracea HOM05D003761 ORTHO05D004412 6.7e-37 157.9 147 55.8
AL7G37500 Arabidopsis lyrata HOM05D003761 ORTHO05D004412 1.1e-34 150.6 149 52.3
Carub.0007s2420 Capsella rubella HOM05D003761 ORTHO05D004412 1.1e-34 150.6 149 53.0
AT4G17215 Arabidopsis thaliana HOM05D003761 ORTHO05D004412 3.1e-34 149.1 149 52.3
Sp7g16980 Schrenkiella parvula HOM05D003761 ORTHO05D004412 4.1e-34 148.7 154 50.0
BcaC06g33549 Brassica carinata HOM05D003761 ORTHO05D004412 5.3e-34 148.3 154 51.3
A03p50350 Brassica napus HOM05D003761 ORTHO05D004412 5.3e-34 148.3 154 51.3
C07p48660 Brassica napus HOM05D003761 ORTHO05D004412 5.3e-34 148.3 154 51.3
BolC7t45373H Brassica oleracea HOM05D003761 ORTHO05D004412 5.3e-34 148.3 154 51.3
BraA03t14124Z Brassica rapa HOM05D003761 ORTHO05D004412 5.3e-34 148.3 154 51.3
THA.LOC104798379 Tarenaya hassleriana HOM05D003761 ORTHO05D004412 5.9e-33 144.8 153 51.6
BcaNung00112 Brassica carinata HOM05D003761 ORTHO05D004412 1.7e-32 143.3 142 51.4
BcaNung03474 Brassica carinata HOM05D003761 ORTHO05D004412 6.5e-32 141.4 154 49.4
BolC9t55850H Brassica oleracea HOM05D003761 ORTHO05D004412 7.9e-30 134.4 101 65.3
vmacro03612 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 3.1e-26 122.5 183 39.9
CANSAT56G1869 Cannabis sativa HOM05D003761 ORTHO05D004412 6.9e-26 121.3 161 42.9
MSTRG.14590 Avicennia marina HOM05D003761 ORTHO05D004412 1.2e-25 120.6 166 44.0
Hma1.2p1_1175F.1_g263990 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 2.6e-25 119.4 139 43.9
Actinidia39257 Actinidia chinensis HOM05D003761 ORTHO05D004412 3.4e-25 119.0 165 41.2
Thecc.06G240300 Theobroma cacao HOM05D003761 ORTHO05D004412 3.4e-25 119.0 146 43.8
Duzib192G0597 Durio zibethinus HOM05D003761 ORTHO05D004412 7.7e-25 117.9 144 43.1
Lj2C256G8 Lonicera japonica HOM05D003761 ORTHO05D004412 7.7e-25 117.9 174 39.7
COL.COLO4_31936 Corchorus olitorius HOM05D003761 ORTHO05D004412 1.0e-24 117.5 137 45.3
EL10Ac8g20260 Beta vulgaris HOM05D003761 ORTHO05D004412 2.2e-24 116.3 154 41.6
Oeu025960.1 Olea europaea HOM05D003761 ORTHO05D004412 2.2e-24 116.3 163 42.3
ECA248G3040 Erigeron canadensis HOM05D003761 ORTHO05D004412 3.8e-24 115.5 163 40.5
Sc24g0000400 Simmondsia chinensis HOM05D003761 ORTHO05D004412 5.0e-24 115.2 165 42.4
Rhsim13G0141000 Rhododendron simsii HOM05D003761 ORTHO05D004412 1.1e-23 114.0 163 40.5
Cpa.g.sc27.232 Carica papaya HOM05D003761 ORTHO05D004412 1.4e-23 113.6 147 40.1
CiPaw.09G108600 Carya illinoinensis HOM05D003761 ORTHO05D004412 1.4e-23 113.6 183 38.8
Ciclev10016770m.g Citrus clementina HOM05D003761 ORTHO05D004412 1.4e-23 113.6 173 36.4
Migut.H01629 Erythranthe guttata HOM05D003761 ORTHO05D004412 1.4e-23 113.6 135 47.4
SGA_v2.0_scaffold186G40120 Striga asiatica HOM05D003761 ORTHO05D004412 1.4e-23 113.6 164 40.9
Lsat_1_v5_gn_1_130120 Lactuca sativa HOM05D003761 ORTHO05D004412 2.5e-23 112.8 128 46.1
QL05p067831 Quercus lobata HOM05D003761 ORTHO05D004412 3.2e-23 112.5 148 42.6
SGA_v2.0_scaffold49G18223 Striga asiatica HOM05D003761 ORTHO05D004412 5.5e-23 111.7 160 40.6
Actinidia11903 Actinidia chinensis HOM05D003761 ORTHO05D004412 9.4e-23 110.9 167 40.1
Lalb_Chr13g0304361 Lupinus albus HOM05D003761 ORTHO05D004412 9.4e-23 110.9 172 39.5
DCAR_030834 Daucus carota HOM05D003761 ORTHO05D004412 1.2e-22 110.5 144 43.1
Eucgr.L00155 Eucalyptus grandis HOM05D003761 ORTHO05D004412 1.6e-22 110.2 165 40.0
TAR626G0912 Trochodendron aralioides HOM05D003761 ORTHO05D004412 1.6e-22 110.2 179 39.1
Aqoxy4G01086 Aquilegia oxysepala HOM05D003761 ORTHO05D004412 2.1e-22 109.8 177 39.0
Oeu057021.1 Olea europaea HOM05D003761 ORTHO05D004412 2.1e-22 109.8 132 43.9
AUR62021816 Chenopodium quinoa HOM05D003761 ORTHO05D004412 2.7e-22 109.4 153 42.5
Gohir.D06G217400 Gossypium hirsutum HOM05D003761 ORTHO05D004412 2.7e-22 109.4 153 39.9
Cfa000041 Carpinus fangiana HOM05D003761 ORTHO05D004412 3.6e-22 109.0 178 38.2
Cc09_g00350 Coffea canephora HOM05D003761 ORTHO05D004412 3.6e-22 109.0 158 41.1
Dinv15342 Davidia involucrata HOM05D003761 ORTHO05D004412 3.6e-22 109.0 150 42.7
PGR042G2523 Punica granatum HOM05D003761 ORTHO05D004412 3.6e-22 109.0 173 40.5
Sabra06G0004500 Salix brachista HOM05D003761 ORTHO05D004412 4.7e-22 108.6 177 36.7
Gorai.010G248800 Gossypium raimondii HOM05D003761 ORTHO05D004412 6.1e-22 108.2 154 39.6
Lsat_1_v5_gn_7_13080 Lactuca sativa HOM05D003761 ORTHO05D004412 8.0e-22 107.8 176 36.9
arahy.Tifrunner.gnm1.ann1.UZ71G8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.0e-21 107.5 168 39.9
arahy.Tifrunner.gnm1.ann1.YY2BB8 Arachis hypogaea HOM05D003761 ORTHO05D004412 1.0e-21 107.5 169 39.6
Nn1g07502 Nelumbo nucifera HOM05D003761 ORTHO05D004412 1.0e-21 107.5 144 41.0
SGA_v2.0_scaffold7G03701 Striga asiatica HOM05D003761 ORTHO05D004412 1.0e-21 107.5 134 43.3
MSTRG.7132 Avicennia marina HOM05D003761 ORTHO05D004412 2.3e-21 106.3 164 41.5
Haze_07014 Corylus avellana HOM05D003761 ORTHO05D004412 2.3e-21 106.3 178 37.1
Prupe.4G004300 Prunus persica HOM05D003761 ORTHO05D004412 2.3e-21 106.3 157 37.6
GSVIVG01005138001 Vitis vinifera HOM05D003761 ORTHO05D004412 2.3e-21 106.3 148 39.2
Eucgr.E03855 Eucalyptus grandis HOM05D003761 ORTHO05D004412 3.0e-21 105.9 146 41.1
CAN.G1156.14 Capsicum annuum HOM05D003761 ORTHO05D004412 5.2e-21 105.1 158 40.5
CAN.G1186.30 Capsicum annuum HOM05D003761 ORTHO05D004412 5.2e-21 105.1 171 36.8
Gohir.A06G204100 Gossypium hirsutum HOM05D003761 ORTHO05D004412 5.2e-21 105.1 151 38.4
AUR62012843 Chenopodium quinoa HOM05D003761 ORTHO05D004412 6.7e-21 104.8 154 40.9
Lj6g0023004 Lotus japonicus HOM05D003761 ORTHO05D004412 6.7e-21 104.8 143 39.2
Sopen11g007440 Solanum pennellii HOM05D003761 ORTHO05D004412 6.7e-21 104.8 131 43.5
Aa31LG2G12410 Aethionema arabicum HOM05D003761 ORTHO05D004412 8.8e-21 104.4 159 41.5
FAN25G2178 Fragaria x ananassa HOM05D003761 ORTHO05D004412 8.8e-21 104.4 157 39.5
Solyc11g012705.2 Solanum lycopersicum HOM05D003761 ORTHO05D004412 8.8e-21 104.4 131 43.5
CSS0009294 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.1e-20 104.0 141 40.4
CSS0045719 Camellia sinensis var. sinensis HOM05D003761 ORTHO05D004412 1.1e-20 104.0 141 40.4
Actinidia02285 Actinidia chinensis HOM05D000829 ORTHO05D000690 1.5e-20 103.6 123 43.9
PGSC0003DMG400013298 Solanum tuberosum HOM05D003761 ORTHO05D004412 1.5e-20 103.6 131 43.5
CsaV3_1G015780 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.0e-20 103.2 149 39.6
CsaV3_UNG065500 Cucumis sativus L. HOM05D003761 ORTHO05D004412 2.0e-20 103.2 149 39.6
FvH4_3g00370 Fragaria vesca HOM05D003761 ORTHO05D004412 2.0e-20 103.2 155 38.7
MBI18_g42884_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 2.6e-20 102.8 166 41.0
MD05G1360900 Malus domestica HOM05D003761 ORTHO05D004412 2.6e-20 102.8 161 37.3
Potri.006G005600 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.6e-20 102.8 179 35.8
Potri.016G006200 Populus trichocarpa HOM05D003761 ORTHO05D004412 2.6e-20 102.8 176 36.4
SalBow8G1906 Salvia bowleyana HOM05D003761 ORTHO05D004412 2.6e-20 102.8 165 38.2
Sopen11g006960 Solanum pennellii HOM05D003761 ORTHO05D004412 2.6e-20 102.8 145 38.6
PGSC0003DMG400013274 Solanum tuberosum HOM05D003761 ORTHO05D004412 2.6e-20 102.8 139 40.3
Manes.09G083000 Manihot esculenta HOM05D003761 ORTHO05D004412 3.3e-20 102.4 171 39.2
MD10G1338600 Malus domestica HOM05D003761 ORTHO05D004412 4.4e-20 102.1 163 36.8
Os10g0208600 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 4.4e-20 102.1 150 38.0
MSTRG.13107 Avicennia marina HOM05D003761 ORTHO05D004412 7.4e-20 101.3 136 41.9
Oeu025400.1 Olea europaea HOM05D003761 ORTHO05D004412 9.7e-20 100.9 146 39.0
FAN21G2431 Fragaria x ananassa HOM05D003761 ORTHO05D004412 1.3e-19 100.5 156 38.5
Lalb_Chr15g0088211 Lupinus albus HOM05D003761 ORTHO05D004412 1.3e-19 100.5 169 37.9
Atru.chr1.2273 Acer truncatum HOM05D003761 ORTHO05D004412 1.7e-19 100.1 146 39.0
MBI18_g27019_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.7e-19 100.1 132 42.4
Peaxi162Scf00442g00073 Petunia axillaris HOM05D003761 ORTHO05D004412 2.8e-19 99.4 137 42.3
Solyc11g012170.1 Solanum lycopersicum HOM05D003761 ORTHO05D004412 2.8e-19 99.4 139 39.6
MELO3C025526.2 Cucumis melo HOM05D003761 ORTHO05D004412 3.7e-19 99.0 143 39.2
Eucgr.L00154 Eucalyptus grandis HOM05D003761 ORTHO05D004412 4.8e-19 98.6 170 37.1
CDE10G1059 Ceratophyllum demersum HOM05D003761 ORTHO05D004412 6.3e-19 98.2 144 37.5
Lj4g0001357 Lotus japonicus HOM05D003761 ORTHO05D004412 6.3e-19 98.2 140 40.7
Oeu002779.1 Olea europaea HOM05D003761 ORTHO05D004412 6.3e-19 98.2 183 37.7
Glyma.17G005900 Glycine max HOM05D003761 ORTHO05D004412 1.1e-18 97.4 142 40.1
Ca_20995_v3 Cicer arietinum L. HOM05D003761 ORTHO05D004412 1.4e-18 97.1 137 43.8
Psat4g002880 Pisum sativum HOM05D003761 ORTHO05D004412 1.4e-18 97.1 144 41.0
vmacro03611 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.8e-18 96.7 145 35.2
vmacro23224 Vaccinium macrocarpon HOM05D003761 ORTHO05D004412 1.8e-18 96.7 145 35.2
Peaxi162Scf00558g00515 Petunia axillaris HOM05D003761 ORTHO05D004412 2.4e-18 96.3 143 40.6
HanXRQChr15g0470241 Helianthus annuus HOM05D003761 ORTHO05D004412 3.1e-18 95.9 157 40.8
Sed0021615 Sechium edule HOM05D003761 ORTHO05D004412 3.1e-18 95.9 149 36.9
Sed0014180 Sechium edule HOM05D003761 ORTHO05D004412 4.1e-18 95.5 183 34.4
Nitab4.5_0000143g0280 Nicotiana tabacum HOM05D003761 ORTHO05D004412 5.3e-18 95.1 130 42.3
TWI38G1412 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 9.1e-18 94.4 157 36.9
ClCG01G010750 Citrullus lanatus HOM05D003761 ORTHO05D004412 1.2e-17 94.0 184 34.2
MBI19_g14888_MAGBIO Magnolia biondii HOM05D003761 ORTHO05D004412 1.2e-17 94.0 151 39.1
HanXRQChr01g0003591 Helianthus annuus HOM05D003761 ORTHO05D004412 1.6e-17 93.6 166 34.3
PGR004G2813 Punica granatum HOM05D003761 ORTHO05D004412 1.6e-17 93.6 147 39.5
TPR.G5987 Trifolium pratense HOM05D003761 ORTHO05D004412 2.6e-17 92.8 133 41.4
HPP92_024936 Vanilla planifolia HOM05D003761 ORTHO05D004412 2.6e-17 92.8 136 39.0
Medtr4g133932 Medicago truncatula HOM05D003761 ORTHO05D004412 3.5e-17 92.4 148 37.8
Phvul.003G086700 Phaseolus vulgaris HOM05D003761 ORTHO05D004412 3.5e-17 92.4 162 37.0
VMungo1215G0779 Vigna mungo HOM05D003761 ORTHO05D004412 3.5e-17 92.4 136 39.7
TWI38G2030 Tripterygium wilfordii HOM05D003761 ORTHO05D004412 4.5e-17 92.0 147 36.7
HPP92_024932 Vanilla planifolia HOM05D003761 ORTHO05D004412 4.5e-17 92.0 136 38.2
Sabra16G0011000 Salix brachista HOM05D003761 ORTHO05D004412 5.9e-17 91.7 172 34.3
Ah.09g233900 Amaranthus hybridus HOM05D003761 ORTHO05D004412 1.7e-16 90.1 151 36.4
PSO541G3650 Papaver somniferum HOM05D003761 ORTHO05D004412 2.2e-16 89.7 172 33.7
Nitab4.5_0001198g0070 Nicotiana tabacum HOM05D003761 ORTHO05D004412 2.9e-16 89.4 122 42.6
PSO675G1588 Papaver somniferum HOM05D003761 ORTHO05D004412 2.9e-16 89.4 172 34.3
Hma1.2p1_1175F.1_g263980 Hydrangea macrophylla HOM05D003761 ORTHO05D004412 8.5e-16 87.8 91 48.4
Os10g0206500 Oryza sativa ssp. japonica HOM05D003761 ORTHO05D004412 1.5e-15 87.0 145 36.6
unitig_52.g17560 Utricularia gibba HOM05D003761 ORTHO05D004412 4.2e-15 85.5 191 31.9
Migut.M01442 Erythranthe guttata HOM05D003761 ORTHO05D004412 2.7e-14 82.8 169 34.3
Zm00001eb050510 Zea mays HOM05D003761 ORTHO05D004412 1.8e-13 80.1 146 33.6
Sc05g0009870 Simmondsia chinensis HOM05D003761 ORTHO05D004412 2.3e-13 79.7 103 44.7
Cpa.g.sc27.234 Carica papaya HOM05D003761 ORTHO05D004412 4.4e-12 75.5 104 37.5
ATR0827G170 Amborella trichopoda HOM05D003761 ORTHO05D004412 9.1e-10 67.8 111 35.1
C02p48790 Brassica napus HOM05D003761 ORTHO05D039658 2.0e-09 66.6 106 39.6
BcaC03g16979 Brassica carinata HOM05D003761 ORTHO05D039658 5.0e-08 62.0 65 52.3


User provided reference genes

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