Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07343 Brassica carinata HOM05D003903 ORTHO05D004828 3.6e-244 847.8 431 100.0
BolC4t28276H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-198 695.7 434 82.5
C04p67730 Brassica napus HOM05D003903 ORTHO05D004828 8.8e-198 693.7 434 82.0
A04p30140 Brassica napus HOM05D003903 ORTHO05D004828 1.3e-196 689.9 434 81.8
BraA04t18495Z Brassica rapa HOM05D003903 ORTHO05D004828 3.1e-195 685.3 434 81.1
BcaC02g07344 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-194 682.2 434 81.1
BcaC02g07389 Brassica carinata HOM05D003903 ORTHO05D004828 2.6e-194 682.2 434 81.1
Sp4g22310 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.0e-189 666.0 436 76.1
CARHR134950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 2.6e-186 655.6 441 75.1
BraA03t11470Z Brassica rapa HOM05D003903 ORTHO05D004828 2.9e-185 652.1 432 75.9
Thhalv10017972m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 2.9e-185 652.1 439 75.9
AT2G40000 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 8.5e-185 650.6 436 74.1
AL4G37600 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 7.2e-184 647.5 436 73.9
A03p22420 Brassica napus HOM05D003903 ORTHO05D004828 8.0e-183 644.0 432 75.5
BcaC01g05448 Brassica carinata HOM05D003903 ORTHO05D004828 1.4e-182 643.3 432 75.2
BcaB01g03584 Brassica carinata HOM05D003903 ORTHO05D004828 2.3e-182 642.5 432 75.9
BolC3t15044H Brassica oleracea HOM05D003903 ORTHO05D004828 2.3e-182 642.5 432 75.2
C03p26580 Brassica napus HOM05D003903 ORTHO05D004828 2.6e-181 639.0 432 74.5
Aa31LG5G19600 Aethionema arabicum HOM05D003903 ORTHO05D004828 6.3e-180 634.4 436 72.7
Carub.0004s2214 Capsella rubella HOM05D003903 ORTHO05D004828 2.4e-179 632.5 436 73.2
BcaB02g09061 Brassica carinata HOM05D003903 ORTHO05D004828 2.0e-173 612.8 436 71.8
C04p07470 Brassica napus HOM05D003903 ORTHO05D004828 1.7e-172 609.8 433 71.1
BolC4t22366H Brassica oleracea HOM05D003903 ORTHO05D004828 1.7e-172 609.8 433 71.1
A05p06420 Brassica napus HOM05D003903 ORTHO05D004828 3.7e-172 608.6 433 70.9
BraA05t19610Z Brassica rapa HOM05D003903 ORTHO05D004828 1.2e-170 603.6 433 70.0
THA.LOC104824309 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.3e-161 573.5 441 65.1
CARHR165950 Cardamine hirsuta HOM05D003903 ORTHO05D004828 1.5e-157 560.1 435 65.1
THA.LOC104810079 Tarenaya hassleriana HOM05D003903 ORTHO05D004828 1.8e-155 553.1 440 64.1
Sp5g06640 Schrenkiella parvula HOM05D003903 ORTHO05D004828 2.7e-154 549.3 408 66.7
AL5G37130 Arabidopsis lyrata HOM05D003903 ORTHO05D004828 9.5e-152 540.8 435 63.9
BolC8t50737H Brassica oleracea HOM05D003903 ORTHO05D004828 3.6e-151 538.9 434 62.9
Carub.0005s2262 Capsella rubella HOM05D003903 ORTHO05D004828 3.6e-151 538.9 417 64.5
A09p48830 Brassica napus HOM05D003903 ORTHO05D004828 6.1e-151 538.1 434 62.7
BraA09t40336Z Brassica rapa HOM05D003903 ORTHO05D004828 6.1e-151 538.1 434 62.7
AT3G55840 Arabidopsis thaliana HOM05D003903 ORTHO05D004828 1.8e-150 536.6 435 63.7
C08p31160 Brassica napus HOM05D003903 ORTHO05D004828 3.1e-150 535.8 434 62.7
BcaB06g29121 Brassica carinata HOM05D003903 ORTHO05D004828 4.0e-150 535.4 433 72.3
Thhalv10010400m.g Eutrema salsugineum HOM05D003903 ORTHO05D004828 3.4e-149 532.3 434 62.7
Cpa.g.sc19.206 Carica papaya HOM05D003903 ORTHO05D004828 1.3e-137 493.8 468 55.8
Ciclev10031447m.g Citrus clementina HOM05D003903 ORTHO05D004828 9.5e-136 487.6 461 56.6
Lj1P952T30 Lonicera japonica HOM05D003903 ORTHO05D004828 4.7e-135 485.3 442 56.6
Manes.07G126900 Manihot esculenta HOM05D003903 ORTHO05D004828 8.9e-134 481.1 469 54.8
Gorai.013G019200 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.2e-133 480.7 458 55.0
Gohir.A13G016200 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.6e-133 479.6 458 55.0
COL.COLO4_25636 Corchorus olitorius HOM05D003903 ORTHO05D004828 3.4e-133 479.2 473 54.1
Prupe.2G247600 Prunus persica HOM05D003903 ORTHO05D004828 3.7e-132 475.7 467 53.5
Gohir.D10G245900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.3e-132 474.6 467 55.7
Gohir.D13G017300 Gossypium hirsutum HOM05D003903 ORTHO05D004828 8.3e-132 474.6 458 54.4
Gorai.011G283600 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.1e-131 474.2 467 55.7
Duzib114G0607 Durio zibethinus HOM05D003903 ORTHO05D004828 1.4e-131 473.8 466 54.7
MD07G1215700 Malus domestica HOM05D003903 ORTHO05D004828 5.4e-131 471.9 470 52.1
Gohir.A10G233600 Gossypium hirsutum HOM05D003903 ORTHO05D004828 1.2e-130 470.7 467 55.5
Manes.10G016200 Manihot esculenta HOM05D003903 ORTHO05D004828 3.5e-130 469.2 469 54.8
Haze_17196 Corylus avellana HOM05D003903 ORTHO05D004828 4.6e-130 468.8 462 55.2
Duzib128G1594 Durio zibethinus HOM05D003903 ORTHO05D004828 4.6e-130 468.8 473 54.3
Gorai.009G322100 Gossypium raimondii HOM05D003903 ORTHO05D004828 1.0e-129 467.6 473 53.7
MD01G1148800 Malus domestica HOM05D003903 ORTHO05D004828 1.7e-129 466.8 470 52.1
GSVIVG01032858001 Vitis vinifera HOM05D003903 ORTHO05D004828 5.1e-129 465.3 435 55.9
Thecc.10G023200 Theobroma cacao HOM05D003903 ORTHO05D004828 6.6e-129 464.9 472 53.8
Cfa001353 Carpinus fangiana HOM05D003903 ORTHO05D004828 8.6e-129 464.5 462 54.8
Gohir.A05G303900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.5e-128 463.0 471 53.5
Gohir.D05G302900 Gossypium hirsutum HOM05D003903 ORTHO05D004828 2.5e-128 463.0 473 53.1
CiPaw.01G296700 Carya illinoinensis HOM05D003903 ORTHO05D004828 3.3e-128 462.6 462 52.8
RcHm_v2.0_Chr1g0369681 Rosa chinensis HOM05D003903 ORTHO05D004828 9.5e-128 461.1 464 52.4
Sed0011279 Sechium edule HOM05D003903 ORTHO05D004828 2.8e-127 459.5 468 51.5
CiPaw.02G190900 Carya illinoinensis HOM05D003903 ORTHO05D004828 1.2e-125 454.1 466 53.9
FAN01G2475 Fragaria x ananassa HOM05D003903 ORTHO05D004828 5.8e-125 451.8 471 50.7
TWI53G1511 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 5.8e-125 451.8 471 51.4
MELO3C008286.2 Cucumis melo HOM05D003903 ORTHO05D004828 7.6e-125 451.4 449 52.3
CANSAT56G3936 Cannabis sativa HOM05D003903 ORTHO05D004828 1.3e-124 450.7 464 51.9
TWI73G0235 Tripterygium wilfordii HOM05D003903 ORTHO05D004828 1.3e-124 450.7 468 51.7
FvH4_7g24150 Fragaria vesca HOM05D003903 ORTHO05D004828 2.9e-124 449.5 470 50.0
FAN10G1202 Fragaria x ananassa HOM05D003903 ORTHO05D004828 2.9e-124 449.5 469 50.5
Potri.008G066000 Populus trichocarpa HOM05D003903 ORTHO05D004828 6.4e-124 448.4 473 51.0
Medtr3g070230 Medicago truncatula HOM05D003903 ORTHO05D004828 8.4e-124 448.0 454 52.6
FAN03G2393 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.1e-123 447.6 454 51.5
LjContig00357g0017260 Lotus japonicus HOM05D003903 ORTHO05D004828 1.1e-123 447.6 448 53.1
Glyma.18G029300 Glycine max HOM05D003903 ORTHO05D004828 1.4e-123 447.2 447 51.9
BcaB01g00057 Brassica carinata HOM05D003903 ORTHO05D004828 5.4e-123 445.3 433 54.5
Psat5g126680 Pisum sativum HOM05D003903 ORTHO05D004828 7.1e-123 444.9 458 50.9
ClCG11G006280 Citrullus lanatus HOM05D003903 ORTHO05D004828 9.2e-123 444.5 473 50.5
Glyma.11G228100 Glycine max HOM05D003903 ORTHO05D004828 9.2e-123 444.5 451 51.4
CsaV3_6G001690 Cucumis sativus L. HOM05D003903 ORTHO05D004828 1.2e-122 444.1 477 49.7
Ca_17155_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 1.6e-122 443.7 454 51.5
Cc02_g06790 Coffea canephora HOM05D003903 ORTHO05D004828 1.6e-122 443.7 474 51.5
Sabra10G0147300 Salix brachista HOM05D003903 ORTHO05D004828 2.1e-122 443.4 469 51.4
Sabra08G0048400 Salix brachista HOM05D003903 ORTHO05D004828 2.7e-122 443.0 470 51.3
PSO339G1420 Papaver somniferum HOM05D003903 ORTHO05D004828 1.7e-121 440.3 475 50.1
Potri.010G191300 Populus trichocarpa HOM05D003903 ORTHO05D004828 1.7e-121 440.3 467 51.0
TAR633G2671 Trochodendron aralioides HOM05D003903 ORTHO05D004828 1.7e-121 440.3 473 51.4
VMungo1383G2047 Vigna mungo HOM05D003903 ORTHO05D004828 3.0e-121 439.5 453 51.0
Atru.chr12.4 Acer truncatum HOM05D003903 ORTHO05D004828 3.9e-121 439.1 447 53.0
Lj6g0001525 Lotus japonicus HOM05D003903 ORTHO05D004828 5.1e-121 438.7 454 51.8
Aqoxy4G02628 Aquilegia oxysepala HOM05D003903 ORTHO05D004828 6.6e-121 438.3 471 48.8
FAN06G4939 Fragaria x ananassa HOM05D003903 ORTHO05D004828 1.9e-120 436.8 459 49.9
Hma1.2p1_1409F.1_g281590 Hydrangea macrophylla HOM05D003903 ORTHO05D004828 3.3e-120 436.0 473 49.9
Nitab4.5_0001346g0020 Nicotiana tabacum HOM05D003903 ORTHO05D004828 5.6e-120 435.3 466 49.6
Rhsim03G0141400 Rhododendron simsii HOM05D003903 ORTHO05D004828 5.6e-120 435.3 452 52.4
Phvul.001G241300 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 9.6e-120 434.5 447 51.0
Eucgr.J00236 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.8e-119 433.0 472 51.3
Lalb_Chr10g0105071 Lupinus albus HOM05D003903 ORTHO05D004828 2.8e-119 433.0 447 51.5
Nn2g11424 Nelumbo nucifera HOM05D003903 ORTHO05D004828 3.6e-119 432.6 465 49.0
Nitab4.5_0000802g0150 Nicotiana tabacum HOM05D003903 ORTHO05D004828 6.2e-119 431.8 467 49.9
Lsat_1_v5_gn_2_121400 Lactuca sativa HOM05D003903 ORTHO05D004828 1.4e-118 430.6 471 48.8
HanXRQChr07g0202521 Helianthus annuus HOM05D003903 ORTHO05D004828 9.0e-118 427.9 461 49.5
Glyma.14G061200 Glycine max HOM05D003903 ORTHO05D004828 2.0e-117 426.8 447 49.9
Psat2g033760 Pisum sativum HOM05D003903 ORTHO05D004828 3.4e-117 426.0 446 49.6
Sed0004569 Sechium edule HOM05D003903 ORTHO05D004828 1.7e-116 423.7 472 48.1
Actinidia29686 Actinidia chinensis HOM05D003903 ORTHO05D004828 2.9e-116 422.9 446 51.6
MSTRG.8967 Avicennia marina HOM05D003903 ORTHO05D004828 2.9e-116 422.9 464 48.5
DCAR_011797 Daucus carota HOM05D003903 ORTHO05D004828 1.1e-115 421.0 462 48.9
Sc10g0002230 Simmondsia chinensis HOM05D003903 ORTHO05D004828 1.4e-115 420.6 469 48.2
arahy.Tifrunner.gnm1.ann1.66PPWS Arachis hypogaea HOM05D003903 ORTHO05D004828 1.9e-115 420.2 448 49.1
Ca_05946_v3 Cicer arietinum L. HOM05D003903 ORTHO05D004828 3.2e-115 419.5 441 50.1
Peaxi162Scf01313g00013 Petunia axillaris HOM05D003903 ORTHO05D004828 9.3e-115 417.9 469 49.5
AUR62022857 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.6e-114 417.2 452 49.1
Glyma.02G255400 Glycine max HOM05D003903 ORTHO05D004828 2.7e-114 416.4 442 48.9
Lj8C71T1 Lonicera japonica HOM05D003903 ORTHO05D004828 3.0e-113 412.9 455 48.8
Medtr5g082150 Medicago truncatula HOM05D003903 ORTHO05D004828 5.1e-113 412.1 455 47.5
AUR62012225 Chenopodium quinoa HOM05D003903 ORTHO05D004828 1.9e-112 410.2 455 47.7
PGR044G2033 Punica granatum HOM05D003903 ORTHO05D004828 2.5e-112 409.8 461 47.9
ECA238G2090 Erigeron canadensis HOM05D003903 ORTHO05D004828 4.3e-112 409.1 438 49.1
Lalb_Chr15g0084211 Lupinus albus HOM05D003903 ORTHO05D004828 7.3e-112 408.3 445 48.8
Phvul.008G225500 Phaseolus vulgaris HOM05D003903 ORTHO05D004828 4.8e-111 405.6 446 46.6
Ah.10g036480 Amaranthus hybridus HOM05D003903 ORTHO05D004828 1.1e-110 404.4 468 45.7
MSTRG.27342 Avicennia marina HOM05D003903 ORTHO05D004828 1.1e-110 404.4 461 47.3
Migut.F00698 Erythranthe guttata HOM05D003903 ORTHO05D004828 1.4e-110 404.1 460 47.8
EL10Ac2g04804 Beta vulgaris HOM05D003903 ORTHO05D004828 5.3e-110 402.1 448 44.9
MBI05_g14236_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 5.3e-110 402.1 475 48.2
CDE07G0538 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.2e-108 396.7 460 47.2
Lalb_Chr18g0052671 Lupinus albus HOM05D003903 ORTHO05D004828 4.9e-108 395.6 448 48.7
Ah.16g103300 Amaranthus hybridus HOM05D003903 ORTHO05D004828 6.4e-108 395.2 450 45.8
VMungo0647G1175 Vigna mungo HOM05D003903 ORTHO05D004828 8.4e-108 394.8 435 47.4
MBI14_g09425_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.1e-107 394.4 471 46.5
PGR142G4408 Punica granatum HOM05D003903 ORTHO05D004828 1.1e-107 394.4 468 48.7
SGA_v2.0_scaffold60G21023 Striga asiatica HOM05D003903 ORTHO05D004828 1.1e-107 394.4 469 46.3
CDE03G0196 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 1.8e-105 387.1 467 45.0
CDE04G0060 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 3.0e-105 386.3 466 44.8
CDE04G2684 Ceratophyllum demersum HOM05D003903 ORTHO05D004828 2.3e-97 360.1 399 48.4
ATR0618G085 Amborella trichopoda HOM05D003903 ORTHO05D004828 5.1e-97 359.0 468 43.2
unitig_37.g12017 Utricularia gibba HOM05D003903 ORTHO05D004828 2.6e-93 346.7 392 46.2
Zm00001eb147510 Zea mays HOM05D003903 ORTHO05D004828 1.0e-89 334.7 430 42.6
Os01g0855600 Oryza sativa ssp. japonica HOM05D003903 ORTHO05D004828 6.7e-89 332.0 436 41.3
Zm00001eb367110 Zea mays HOM05D003903 ORTHO05D004828 2.8e-87 326.6 445 39.8
HPP92_019430 Vanilla planifolia HOM05D003903 ORTHO05D004828 8.2e-87 325.1 440 42.7
SEGI_25890 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 2.0e-85 320.5 427 42.2
Dinv20976 Davidia involucrata HOM05D003903 ORTHO05D004828 8.5e-84 315.1 291 56.0
Dinv21029 Davidia involucrata HOM05D003903 ORTHO05D004828 8.5e-84 315.1 291 56.0
SEGI_13375 Sequoiadendron giganteum HOM05D003903 ORTHO05D004828 3.6e-82 309.7 426 39.7
Pp3c11_5520 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.7e-79 299.7 433 38.6
Pp3c2_27180 Physcomitrium patens HOM05D003903 ORTHO05D004828 8.2e-79 298.5 433 39.7
Pp3c1_9290 Physcomitrium patens HOM05D003903 ORTHO05D004828 3.4e-77 293.1 470 36.4
Pp3c7_23390 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.5e-77 292.7 433 37.9
Pp3c10_11250 Physcomitrium patens HOM05D003903 ORTHO05D004828 4.4e-72 276.2 421 37.8
BcaNung05460 Brassica carinata HOM05D003903 ORTHO05D004828 3.7e-71 273.1 164 87.8
C04p07450 Brassica napus HOM05D003903 ORTHO05D004828 5.9e-69 265.8 203 65.5
BolC4t22365H Brassica oleracea HOM05D003903 ORTHO05D004828 7.7e-69 265.4 203 65.5
BcaNung05461 Brassica carinata HOM05D003903 ORTHO05D004828 4.8e-63 246.1 280 55.7
Pp3c1_34950 Physcomitrium patens HOM05D003903 ORTHO05D004828 1.5e-59 234.6 331 38.7
Eucgr.G03040 Eucalyptus grandis HOM05D003903 ORTHO05D004828 2.8e-55 220.3 346 42.2
MBI09_g39159_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 1.6e-45 188.0 210 47.6
Dinv34412 Davidia involucrata HOM05D003903 ORTHO05D004828 1.0e-44 185.3 200 50.0
MBI15_g28805_MAGBIO Magnolia biondii HOM05D003903 ORTHO05D004828 3.3e-43 180.3 163 53.4
TPR.G2520 Trifolium pratense HOM05D003903 ORTHO05D004828 1.8e-41 174.5 200 47.5
Nn5g26808 Nelumbo nucifera HOM05D003903 ORTHO05D004828 1.1e-25 122.1 330 29.1
arahy.Tifrunner.gnm1.ann1.I5QRDP Arachis hypogaea HOM05D003903 ORTHO05D004828 3.1e-25 120.6 106 51.9
BcaC02g07346 Brassica carinata HOM05D003903 ORTHO05D095566 3.3e-19 100.5 61 86.9
BcaC09g52232 Brassica carinata HOM05D003903 ORTHO05D031840 1.2e-18 98.6 123 49.6
BcaC02g07345 Brassica carinata HOM05D003903 ORTHO05D091390 2.6e-16 90.9 99 51.5
C08p31450 Brassica napus HOM05D003903 ORTHO05D031840 1.4e-14 85.1 88 54.5
BolC7t41876H Brassica oleracea HOM05D003903 ORTHO05D031840 2.1e-13 81.3 90 52.2
C05p20030 Brassica napus HOM05D003903 ORTHO05D004828 6.8e-09 66.2 47 70.2
VMungo0540G2232 Vigna mungo HOM05D003903 ORTHO05D004828 2.9e-07 60.8 135 34.1


User provided reference genes

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