Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07326 Brassica carinata HOM05D003400 ORTHO05D003687 1.4e-196 689.5 367 100.0
BolC4t28345H Brassica oleracea HOM05D003400 ORTHO05D003687 3.0e-175 618.6 334 98.2
BraA04t18562Z Brassica rapa HOM05D003400 ORTHO05D003687 4.4e-150 535.0 356 83.7
C04p68450 Brassica napus HOM05D003400 ORTHO05D003687 1.1e-135 487.3 366 76.2
A04p31060 Brassica napus HOM05D003400 ORTHO05D003687 1.6e-128 463.4 277 89.5
BcaB06g29158 Brassica carinata HOM05D003400 ORTHO05D003687 9.7e-89 331.3 282 68.8
Sp4g22960 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.7e-85 320.5 412 53.2
C03p27090 Brassica napus HOM05D003400 ORTHO05D003687 7.0e-79 298.5 404 50.7
BcaC01g05391 Brassica carinata HOM05D003400 ORTHO05D003687 2.7e-78 296.6 404 50.0
A03p22840 Brassica napus HOM05D003400 ORTHO05D003687 7.7e-78 295.0 464 46.3
Thhalv10016481m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.8e-74 283.9 418 46.9
Carub.0004s2292 Capsella rubella HOM05D003400 ORTHO05D003687 8.3e-72 275.0 425 47.3
AL4G38500 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 2.0e-70 270.4 422 47.4
BcaB01g03526 Brassica carinata HOM05D003400 ORTHO05D003687 2.0e-70 270.4 396 49.2
AT2G40630 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 1.5e-68 264.2 413 46.7
BraA03t11508Z Brassica rapa HOM05D003400 ORTHO05D003687 8.0e-67 258.5 464 43.5
Aa31LG3G1490 Aethionema arabicum HOM05D003400 ORTHO05D003687 8.3e-56 221.9 424 40.3
CARHR135740 Cardamine hirsuta HOM05D003400 ORTHO05D003687 1.5e-44 184.5 206 57.8
BcaB06g29161 Brassica carinata HOM05D003400 ORTHO05D003687 1.1e-42 178.3 174 61.5
Lj1C967G2 Lonicera japonica HOM05D003400 ORTHO05D003687 4.7e-35 152.9 354 34.7
C02p02230 Brassica napus HOM05D003400 ORTHO05D003687 1.8e-34 151.0 395 33.4
BcaC03g13153 Brassica carinata HOM05D003400 ORTHO05D003687 3.1e-34 150.2 399 32.6
Actinidia07793 Actinidia chinensis HOM05D003400 ORTHO05D003687 4.0e-34 149.8 368 31.5
GSVIVG01032673001 Vitis vinifera HOM05D003400 ORTHO05D003687 5.2e-34 149.4 367 33.5
BolC2t06192H Brassica oleracea HOM05D003400 ORTHO05D003687 8.9e-34 148.7 406 31.8
COL.COLO4_19367 Corchorus olitorius HOM05D003400 ORTHO05D003687 8.9e-34 148.7 404 30.7
THA.LOC104813796 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 8.9e-34 148.7 342 33.9
DCAR_020152 Daucus carota HOM05D003400 ORTHO05D003687 1.2e-33 148.3 296 35.8
Peaxi162Scf00739g00321 Petunia axillaris HOM05D003400 ORTHO05D003687 1.2e-33 148.3 441 29.9
Thecc.10G181000 Theobroma cacao HOM05D003400 ORTHO05D003687 1.2e-33 148.3 482 30.1
ECA232G0413 Erigeron canadensis HOM05D003400 ORTHO05D003687 2.0e-33 147.5 422 31.8
Hma1.2p1_0264F.1_g106160 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 2.0e-33 147.5 390 31.8
Zm00001eb231310 Zea mays HOM05D003400 ORTHO05D003687 3.4e-33 146.7 366 32.8
Lsat_1_v5_gn_8_11440 Lactuca sativa HOM05D003400 ORTHO05D003687 4.4e-33 146.4 372 33.3
HanXRQChr08g0221571 Helianthus annuus HOM05D003400 ORTHO05D003687 5.8e-33 146.0 362 32.9
Manes.07G143400 Manihot esculenta HOM05D003400 ORTHO05D003687 5.8e-33 146.0 389 30.8
Aa31LG11G6090 Aethionema arabicum HOM05D003400 ORTHO05D003687 9.9e-33 145.2 366 32.5
Rhsim09G0185900 Rhododendron simsii HOM05D003400 ORTHO05D003687 1.3e-32 144.8 361 31.9
PGSC0003DMG400016640 Solanum tuberosum HOM05D003400 ORTHO05D003687 1.3e-32 144.8 403 31.0
Solyc06g048970.3 Solanum lycopersicum HOM05D003400 ORTHO05D003687 2.2e-32 144.1 403 31.0
vmacro09957 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 2.2e-32 144.1 360 31.9
CAN.G24.15 Capsicum annuum HOM05D003400 ORTHO05D003687 2.9e-32 143.7 440 30.0
Sopen06g015320 Solanum pennellii HOM05D003400 ORTHO05D003687 2.9e-32 143.7 403 31.0
Migut.F00607 Erythranthe guttata HOM05D003400 ORTHO05D003687 4.9e-32 142.9 352 33.2
Nitab4.5_0002745g0010 Nicotiana tabacum HOM05D003400 ORTHO05D003687 6.4e-32 142.5 396 31.6
Actinidia31626 Actinidia chinensis HOM05D003400 ORTHO05D003687 8.4e-32 142.1 385 31.4
Nitab4.5_0000171g0020 Nicotiana tabacum HOM05D003400 ORTHO05D003687 8.4e-32 142.1 396 31.6
CANSAT21G0473 Cannabis sativa HOM05D003400 ORTHO05D003687 1.4e-31 141.4 392 30.4
BcaB05g21725 Brassica carinata HOM05D003400 ORTHO05D003687 1.9e-31 141.0 422 28.2
BolC9t59909H Brassica oleracea HOM05D003400 ORTHO05D003687 1.9e-31 141.0 361 32.1
A10p30950 Brassica napus HOM05D003400 ORTHO05D003687 2.4e-31 140.6 362 32.6
BraA10t45140Z Brassica rapa HOM05D003400 ORTHO05D003687 2.4e-31 140.6 362 32.6
Duzib114G0186 Durio zibethinus HOM05D003400 ORTHO05D003687 2.4e-31 140.6 471 28.9
Aqoxy4G02422 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 3.2e-31 140.2 373 30.0
BraA02t04839Z Brassica rapa HOM05D003400 ORTHO05D003687 4.1e-31 139.8 417 30.7
Os02g0132200 Oryza sativa ssp. japonica HOM05D003400 ORTHO05D003687 4.1e-31 139.8 360 31.4
Lj1g0015659 Lotus japonicus HOM05D003400 ORTHO05D003687 7.1e-31 139.0 470 28.1
CANSAT21G1871 Cannabis sativa HOM05D003400 ORTHO05D003687 9.2e-31 138.7 390 30.3
Lsat_1_v5_gn_9_60041 Lactuca sativa HOM05D003400 ORTHO05D003687 9.2e-31 138.7 353 32.9
TWI53G0017 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.6e-30 137.9 404 30.0
ECA233G0468 Erigeron canadensis HOM05D003400 ORTHO05D003687 2.1e-30 137.5 330 31.8
C09p71460 Brassica napus HOM05D003400 ORTHO05D003687 2.7e-30 137.1 361 31.9
Gohir.D05G280400 Gossypium hirsutum HOM05D003400 ORTHO05D003687 3.5e-30 136.7 447 29.1
DCAR_018037 Daucus carota HOM05D003400 ORTHO05D003687 4.6e-30 136.3 357 31.4
BcaC06g32233 Brassica carinata HOM05D003400 ORTHO05D003687 6.0e-30 136.0 359 32.3
Atru.chr12.183 Acer truncatum HOM05D003400 ORTHO05D003687 1.0e-29 135.2 400 30.2
Actinidia13648 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.0e-29 135.2 393 30.0
Thhalv10013224m.g Eutrema salsugineum HOM05D003400 ORTHO05D003687 1.0e-29 135.2 364 31.0
Manes.10G001400 Manihot esculenta HOM05D003400 ORTHO05D003687 1.0e-29 135.2 395 29.9
SGA_v2.0_scaffold60G20888 Striga asiatica HOM05D003400 ORTHO05D003687 1.0e-29 135.2 421 30.4
THA.LOC104823169 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 1.3e-29 134.8 383 29.5
TWI09G1099 Tripterygium wilfordii HOM05D003400 ORTHO05D003687 1.3e-29 134.8 401 29.9
Potri.019G058200 Populus trichocarpa HOM05D003400 ORTHO05D003687 2.3e-29 134.0 390 30.5
MBI03_g15591_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 3.0e-29 133.7 357 32.5
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 5.1e-29 132.9 380 31.1
Sed0002948 Sechium edule HOM05D003400 ORTHO05D003687 8.7e-29 132.1 439 28.7
Gohir.A05G403000 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.5e-28 131.3 469 28.1
QL08p064852 Quercus lobata HOM05D003400 ORTHO05D003687 1.9e-28 131.0 439 29.2
Sp6g37590 Schrenkiella parvula HOM05D003400 ORTHO05D003687 1.9e-28 131.0 385 29.6
Lalb_Chr24g0402681 Lupinus albus HOM05D003400 ORTHO05D003687 2.5e-28 130.6 459 27.2
Ciclev10030981m.g Citrus clementina HOM05D003400 ORTHO05D003687 4.3e-28 129.8 410 28.3
Gohir.D04G012500 Gossypium hirsutum HOM05D003400 ORTHO05D003687 4.3e-28 129.8 470 28.3
Gorai.012G014800 Gossypium raimondii HOM05D003400 ORTHO05D003687 4.3e-28 129.8 470 28.1
Psat6g036400 Pisum sativum HOM05D003400 ORTHO05D003687 4.3e-28 129.8 456 29.2
CARHR207990 Cardamine hirsuta HOM05D003400 ORTHO05D003687 5.6e-28 129.4 404 29.5
Cc02_g05370 Coffea canephora HOM05D003400 ORTHO05D003687 5.6e-28 129.4 405 29.1
Gorai.009G293800 Gossypium raimondii HOM05D003400 ORTHO05D003687 5.6e-28 129.4 427 28.1
Prupe.2G264100 Prunus persica HOM05D003400 ORTHO05D003687 5.6e-28 129.4 464 26.3
DCAR_029743 Daucus carota HOM05D000792 ORTHO05D004195 9.6e-28 128.6 351 29.6
Manes.07G141701 Manihot esculenta HOM05D003400 ORTHO05D003687 9.6e-28 128.6 350 31.4
CiPaw.01G306600 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.6e-27 127.9 396 29.8
CSS0037757 Camellia sinensis var. sinensis HOM05D003400 ORTHO05D003687 2.1e-27 127.5 403 29.8
Migut.F01244 Erythranthe guttata HOM05D003400 ORTHO05D003687 2.1e-27 127.5 329 31.6
MD07G1233700 Malus domestica HOM05D003400 ORTHO05D003687 2.1e-27 127.5 459 26.6
Lalb_Chr22g0360931 Lupinus albus HOM05D003400 ORTHO05D003687 2.8e-27 127.1 469 27.7
PSO384G0897 Papaver somniferum HOM05D003400 ORTHO05D003687 2.8e-27 127.1 409 29.3
Potri.013G091100 Populus trichocarpa HOM05D003400 ORTHO05D003687 3.6e-27 126.7 319 32.6
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 3.6e-27 126.7 475 28.4
AUR62030610 Chenopodium quinoa HOM05D003400 ORTHO05D003687 6.2e-27 125.9 398 26.6
MELO3C020148.2 Cucumis melo HOM05D003400 ORTHO05D003687 6.2e-27 125.9 443 28.0
SGA_v2.0_scaffold44G16620 Striga asiatica HOM05D003400 ORTHO05D003687 6.2e-27 125.9 354 30.5
TAR633G0453 Trochodendron aralioides HOM05D003400 ORTHO05D003687 6.2e-27 125.9 452 27.7
Ca_03351_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 8.1e-27 125.6 462 27.1
PSO170G4360 Papaver somniferum HOM05D003400 ORTHO05D003687 1.4e-26 124.8 365 29.6
MSTRG.8889 Avicennia marina HOM05D003400 ORTHO05D003687 2.4e-26 124.0 399 28.8
Eucgr.J00113 Eucalyptus grandis HOM05D003400 ORTHO05D003687 2.4e-26 124.0 396 28.5
arahy.Tifrunner.gnm1.ann1.JMN63H Arachis hypogaea HOM05D003400 ORTHO05D003687 4.0e-26 123.2 329 30.1
Rhsim03G0152500 Rhododendron simsii HOM05D003400 ORTHO05D003687 4.0e-26 123.2 417 28.1
AT5G05240 Arabidopsis thaliana HOM05D003400 ORTHO05D003687 5.2e-26 122.9 374 28.3
arahy.Tifrunner.gnm1.ann1.45IBUQ Arachis hypogaea HOM05D003400 ORTHO05D003687 5.2e-26 122.9 343 30.3
AUR62024934 Chenopodium quinoa HOM05D003400 ORTHO05D003687 5.2e-26 122.9 399 26.3
Carub.0006s0417 Capsella rubella HOM05D003400 ORTHO05D003687 9.0e-26 122.1 376 30.1
SalBow3G2848 Salvia bowleyana HOM05D003400 ORTHO05D003687 9.0e-26 122.1 413 28.8
Hma1.2p1_0292F.1_g115970 Hydrangea macrophylla HOM05D003400 ORTHO05D003687 1.2e-25 121.7 384 28.1
EL10Ac2g02645 Beta vulgaris HOM05D003400 ORTHO05D003687 2.0e-25 120.9 414 26.1
PSO339G6613 Papaver somniferum HOM05D003400 ORTHO05D003687 2.0e-25 120.9 409 28.6
PGR044G0713 Punica granatum HOM05D003400 ORTHO05D003687 3.4e-25 120.2 196 40.8
VMungo0647G2516 Vigna mungo HOM05D003400 ORTHO05D003687 5.8e-25 119.4 434 27.4
CsaV3_5G010950 Cucumis sativus L. HOM05D003400 ORTHO05D003687 7.6e-25 119.0 448 27.0
RcHm_v2.0_Chr1g0372301 Rosa chinensis HOM05D003400 ORTHO05D003687 7.6e-25 119.0 419 27.4
MSTRG.171 Avicennia marina HOM05D003400 ORTHO05D003687 9.9e-25 118.6 393 28.2
Dinv21846 Davidia involucrata HOM05D003400 ORTHO05D003687 1.3e-24 118.2 222 37.8
FAN10G0615 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.3e-24 118.2 431 27.6
Gohir.A05G278600 Gossypium hirsutum HOM05D003400 ORTHO05D003687 1.3e-24 118.2 377 29.2
MBI15_g01598_MAGBIO Magnolia biondii HOM05D003400 ORTHO05D003687 1.3e-24 118.2 361 29.4
Phvul.001G062900 Phaseolus vulgaris HOM05D003400 ORTHO05D003687 1.3e-24 118.2 430 27.0
Haze_17357 Corylus avellana HOM05D003400 ORTHO05D003687 1.7e-24 117.9 464 27.4
Nn2g10302 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.7e-24 117.9 402 28.6
FvH4_7g25930 Fragaria vesca HOM05D003400 ORTHO05D003687 2.2e-24 117.5 427 27.9
FAN03G2499 Fragaria x ananassa HOM05D003400 ORTHO05D003687 2.2e-24 117.5 429 27.5
FAN06G1869 Fragaria x ananassa HOM05D003400 ORTHO05D003687 6.4e-24 115.9 427 27.9
Medtr1g007460 Medicago truncatula HOM05D003400 ORTHO05D003687 8.4e-24 115.5 455 25.9
TAR623G0519 Trochodendron aralioides HOM05D003400 ORTHO05D003687 8.4e-24 115.5 403 28.0
AL6G15080 Arabidopsis lyrata HOM05D003400 ORTHO05D003687 1.1e-23 115.2 375 29.6
Nn5g26847 Nelumbo nucifera HOM05D003400 ORTHO05D003687 1.1e-23 115.2 400 27.0
FAN01G0709 Fragaria x ananassa HOM05D003400 ORTHO05D003687 1.4e-23 114.8 423 27.2
MD01G1167700 Malus domestica HOM05D003400 ORTHO05D003687 5.4e-23 112.8 452 25.7
Hund15817 Selenicereus undatus HOM05D003400 ORTHO05D003687 5.4e-23 112.8 404 26.2
CDE04G0272 Ceratophyllum demersum HOM05D003400 ORTHO05D003687 1.6e-22 111.3 375 27.2
Glyma.14G117500 Glycine max HOM05D003400 ORTHO05D003687 1.6e-22 111.3 441 25.9
TAR369G0853 Trochodendron aralioides HOM05D003400 ORTHO05D003687 1.6e-22 111.3 479 26.5
Glyma.17G191500 Glycine max HOM05D003400 ORTHO05D003687 2.1e-22 110.9 435 25.7
Duzib106G2049 Durio zibethinus HOM05D003400 ORTHO05D003687 3.5e-22 110.2 224 38.4
Lj8C54T21 Lonicera japonica HOM05D003400 ORTHO05D003687 4.6e-22 109.8 325 29.8
PSO017G2438 Papaver somniferum HOM05D003400 ORTHO05D003687 6.0e-22 109.4 378 27.0
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 1.0e-21 108.6 188 42.0
Sabra19G0073600 Salix brachista HOM05D003400 ORTHO05D003687 3.0e-21 107.1 198 38.4
vmacro06891 Vaccinium macrocarpon HOM05D003400 ORTHO05D003687 3.9e-21 106.7 393 26.5
EL10Ac3g07235 Beta vulgaris HOM05D003400 ORTHO05D003687 5.1e-21 106.3 435 24.6
Actinidia01001 Actinidia chinensis HOM05D003400 ORTHO05D003687 1.3e-19 101.7 193 36.8
Sed0014609 Sechium edule HOM05D003400 ORTHO05D003687 1.3e-19 101.7 405 26.7
Oeu063984.1 Olea europaea HOM05D003400 ORTHO05D003687 8.1e-19 99.0 192 39.1
Ca_12768_v3 Cicer arietinum L. HOM05D003400 ORTHO05D003687 1.1e-18 98.6 355 27.6
HanXRQChr09g0252221 Helianthus annuus HOM05D003400 ORTHO05D003687 2.4e-18 97.4 215 36.7
Rhsim03G0152100 Rhododendron simsii HOM05D003400 ORTHO05D003687 9.0e-18 95.5 418 26.3
TAR636G2149 Trochodendron aralioides HOM05D003400 ORTHO05D003687 9.0e-18 95.5 165 38.8
Cpa.g.sc19.58 Carica papaya HOM05D003400 ORTHO05D003687 3.4e-17 93.6 335 26.9
Hund13449 Selenicereus undatus HOM05D003400 ORTHO05D003687 3.4e-17 93.6 399 25.6
HPP92_024977 Vanilla planifolia HOM05D003400 ORTHO05D003687 5.8e-17 92.8 376 26.9
Aqoxy2G00693 Aquilegia oxysepala HOM05D003400 ORTHO05D003687 2.9e-16 90.5 334 26.9
Dinv34484 Davidia involucrata HOM05D003400 ORTHO05D003687 6.4e-16 89.4 254 30.7
CiPaw.13G063500 Carya illinoinensis HOM05D003400 ORTHO05D003687 1.8e-13 81.3 343 24.2
unitig_37.g12474 Utricularia gibba HOM05D003400 ORTHO05D003687 8.7e-13 79.0 249 28.1
Oeu006054.1 Olea europaea HOM05D003400 ORTHO05D003687 8.1e-11 72.4 178 28.7
Zm00001eb209040 Zea mays HOM05D003400 ORTHO05D003687 1.8e-10 71.2 122 40.2
Sc14g0005640 Simmondsia chinensis HOM05D003400 ORTHO05D003687 3.1e-10 70.5 116 42.2
QL01p024561 Quercus lobata HOM05D003400 ORTHO05D003687 1.2e-09 68.6 351 22.5
FAN03G2881 Fragaria x ananassa HOM05D003400 ORTHO05D003687 3.4e-09 67.0 95 41.1
TAR636G0727 Trochodendron aralioides HOM05D003400 ORTHO05D003687 2.2e-08 64.3 112 33.0
Haze_24472 Corylus avellana HOM05D003400 ORTHO05D003687 2.9e-08 63.9 362 23.2
HanXRQChr09g0240401 Helianthus annuus HOM05D003400 ORTHO05D003687 4.2e-07 60.1 141 35.5
HanXRQChr09g0253941 Helianthus annuus HOM05D003400 ORTHO05D003687 4.2e-07 60.1 141 35.5
BcaC06g32234 Brassica carinata HOM05D003400 ORTHO05D003687 9.3e-07 58.9 134 31.3
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 1.6e-06 58.2 182 29.7
MSTRG.8378 Avicennia marina HOM05D003400 ORTHO05D003687 2.1e-06 57.8 106 34.0
Duzib128G1678 Durio zibethinus HOM05D003400 ORTHO05D003687 2.7e-06 57.4 146 31.5


User provided reference genes

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