Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 5.8e-115 417.5 208 100.0
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 5.8e-115 417.5 208 100.0
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 3.9e-111 404.8 208 97.1
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 6.3e-109 397.5 206 96.6
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 8.2e-109 397.1 206 96.1
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 5.3e-100 367.9 206 84.5
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 6.7e-87 324.3 209 77.0
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 3.7e-77 292.0 205 71.7
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 6.5e-74 281.2 205 68.8
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 2.5e-73 279.3 205 67.3
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 5.5e-73 278.1 208 64.9
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 2.7e-72 275.8 205 66.8
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 4.7e-72 275.0 197 67.0
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 1.4e-60 236.9 204 59.8
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 1.0e-50 204.1 203 52.2
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 1.5e-49 200.3 192 53.6
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 1.5e-49 200.3 199 52.8
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 1.5e-49 200.3 203 50.2
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 1.9e-49 199.9 203 48.8
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 9.5e-49 197.6 192 53.1
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 4.7e-48 195.3 203 47.8
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 2.3e-47 193.0 204 50.0
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 3.1e-47 192.6 201 50.7
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 3.1e-47 192.6 200 50.0
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 3.1e-47 192.6 202 47.5
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 4.0e-47 192.2 200 50.0
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 5.2e-47 191.8 201 47.8
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 5.2e-47 191.8 201 50.2
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 8.9e-47 191.0 201 49.8
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 1.2e-46 190.7 201 51.7
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 2.6e-46 189.5 203 47.8
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 4.4e-46 188.7 200 48.0
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 4.4e-46 188.7 211 48.3
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 4.4e-46 188.7 203 48.3
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 5.8e-46 188.3 201 47.8
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 9.8e-46 187.6 194 51.0
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 9.8e-46 187.6 200 51.0
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 2.2e-45 186.4 196 49.0
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 2.2e-45 186.4 199 50.8
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 3.7e-45 185.7 204 45.1
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 6.4e-45 184.9 200 48.0
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 2.4e-44 183.0 202 44.6
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 9.2e-44 181.0 192 49.5
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 1.2e-43 180.6 196 47.4
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 1.2e-43 180.6 206 48.1
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 1.6e-43 180.3 198 46.5
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 2.1e-43 179.9 199 47.7
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 4.6e-43 178.7 203 45.3
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 4.6e-43 178.7 186 50.5
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 7.8e-43 177.9 184 47.8
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 7.8e-43 177.9 196 46.4
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 1.0e-42 177.6 201 44.8
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 1.0e-42 177.6 204 47.5
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 1.0e-42 177.6 188 50.5
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 1.3e-42 177.2 184 47.8
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 1.3e-42 177.2 202 46.5
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 2.3e-42 176.4 203 45.3
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 8.6e-42 174.5 201 44.8
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 1.5e-41 173.7 201 45.8
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 1.5e-41 173.7 203 44.3
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 4.3e-41 172.2 202 44.6
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 5.6e-41 171.8 188 47.9
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 1.6e-40 170.2 203 42.9
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.6e-40 170.2 205 46.3
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.6e-40 170.2 203 46.8
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 2.1e-40 169.9 205 46.3
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 2.8e-40 169.5 163 53.4
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 2.8e-40 169.5 208 44.7
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 3.6e-40 169.1 190 44.7
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 4.7e-40 168.7 189 47.6
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 8.1e-40 167.9 184 45.1
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 1.1e-39 167.5 196 44.4
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 2.3e-39 166.4 198 43.9
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 3.1e-39 166.0 205 46.3
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 4.0e-39 165.6 205 44.4
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 5.2e-39 165.2 211 45.5
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 1.5e-38 163.7 163 52.1
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.6e-38 162.9 159 50.3
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 4.4e-38 162.2 208 45.2
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 2.9e-37 159.5 190 43.7
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 3.7e-37 159.1 233 41.6
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 4.9e-37 158.7 202 44.1
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 6.4e-37 158.3 201 41.8
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 1.9e-36 156.8 205 42.9
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 2.3e-34 149.8 208 42.3
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 6.2e-32 141.7 136 52.9
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 1.7e-29 133.7 271 33.9
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 6.4e-29 131.7 208 36.1
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.4e-28 130.6 183 41.0
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 1.2e-27 127.5 135 47.4
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 1.3e-26 124.0 142 45.1
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 2.3e-26 123.2 180 42.2
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 8.7e-26 121.3 132 47.0
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 5.6e-25 118.6 143 44.8
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 6.2e-24 115.2 204 38.7
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 8.1e-24 114.8 114 54.4
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 1.2e-22 110.9 96 56.2
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 1.2e-22 110.9 189 36.0
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 2.0e-22 110.2 211 34.6
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 5.8e-22 108.6 105 52.4
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 1.1e-20 104.4 100 53.0
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 1.0e-18 97.8 196 31.6
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 1.9e-17 93.6 193 35.2
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 5.6e-17 92.0 124 41.9
CANSAT35G1073 Cannabis sativa HOM05D001009 ORTHO05D000829 7.9e-11 71.6 204 30.4
Thhalv10008623m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 1.8e-10 70.5 192 26.0
AL1G28030 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 3.0e-10 69.7 186 23.7
Duzib106G0916 Durio zibethinus HOM05D001009 ORTHO05D000829 3.0e-10 69.7 197 27.4
Carub.0001s1567 Capsella rubella HOM05D001009 ORTHO05D000829 3.9e-10 69.3 187 24.1
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.9e-10 69.3 140 33.6
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.9e-10 69.3 140 33.6
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 3.9e-10 69.3 140 33.6
AT1G15870 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 8.7e-10 68.2 187 23.0
HPP92_007460 Vanilla planifolia HOM05D001009 ORTHO05D000829 8.7e-10 68.2 204 27.9
BolC5t30141H Brassica oleracea HOM05D001009 ORTHO05D000829 1.1e-09 67.8 192 26.6
C05p14100 Brassica napus HOM05D001009 ORTHO05D000829 1.5e-09 67.4 192 26.0
AT1G80720 Arabidopsis thaliana HOM05D001009 ORTHO05D000829 1.9e-09 67.0 188 27.1
AL6G11270 Arabidopsis lyrata HOM05D001009 ORTHO05D000829 2.5e-09 66.6 202 28.7
A06p11920 Brassica napus HOM05D001009 ORTHO05D000829 4.3e-09 65.9 192 22.9
BraA06t24362Z Brassica rapa HOM05D001009 ORTHO05D000829 4.3e-09 65.9 192 22.9
Ciclev10032528m.g Citrus clementina HOM05D001009 ORTHO05D000829 4.3e-09 65.9 192 26.6
PGR031G1509 Punica granatum HOM05D001009 ORTHO05D000829 5.6e-09 65.5 193 26.4
TPR.G27325 Trifolium pratense HOM05D001009 ORTHO05D000829 5.6e-09 65.5 198 28.8
Carub.0002s2683 Capsella rubella HOM05D001009 ORTHO05D000829 7.4e-09 65.1 186 25.8
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 7.4e-09 65.1 163 25.8
CARHR016390 Cardamine hirsuta HOM05D001009 ORTHO05D000829 9.6e-09 64.7 188 22.9
Thhalv10019068m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 9.6e-09 64.7 188 26.6
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 1.3e-08 64.3 200 25.0
DCAR_025580 Daucus carota HOM05D001009 ORTHO05D000829 2.1e-08 63.5 186 24.7
Sp5g35030 Schrenkiella parvula HOM05D001009 ORTHO05D000829 2.1e-08 63.5 188 26.6
A07p44970 Brassica napus HOM05D001009 ORTHO05D000829 2.8e-08 63.2 188 27.1
BcaC08g47550 Brassica carinata HOM05D001009 ORTHO05D000829 3.7e-08 62.8 188 26.6
C06p53750 Brassica napus HOM05D001009 ORTHO05D000829 3.7e-08 62.8 188 26.6
BolC6t40393H Brassica oleracea HOM05D001009 ORTHO05D000829 3.7e-08 62.8 188 26.6
Eucgr.E02491 Eucalyptus grandis HOM05D001009 ORTHO05D000829 3.7e-08 62.8 200 25.0
Mapoly0001s0479 Marchantia polymorpha HOM05D001009 ORTHO05D000829 3.7e-08 62.8 204 27.0
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 3.7e-08 62.8 84 42.9
Carub.0006s0090 Capsella rubella HOM05D001009 ORTHO05D000829 4.8e-08 62.4 208 28.4
PSO675G0087 Papaver somniferum HOM05D001009 ORTHO05D000829 4.8e-08 62.4 198 27.8
Lj4C682T4 Lonicera japonica HOM05D001009 ORTHO05D000829 8.1e-08 61.6 188 23.9
Nitab4.5_0001454g0100 Nicotiana tabacum HOM05D001009 ORTHO05D000829 1.1e-07 61.2 191 25.1
Lj5A78T82 Lonicera japonica HOM05D001009 ORTHO05D000829 1.8e-07 60.5 204 23.5
Medtr7g063520 Medicago truncatula HOM05D001009 ORTHO05D000829 1.8e-07 60.5 202 25.2
TWI74G1509 Tripterygium wilfordii HOM05D001009 ORTHO05D000829 1.8e-07 60.5 164 31.1
Solyc03g117080.4 Solanum lycopersicum HOM05D001009 ORTHO05D000829 2.4e-07 60.1 190 26.3
Medtr5g080880 Medicago truncatula HOM05D001009 ORTHO05D000829 3.1e-07 59.7 199 26.1
Nitab4.5_0009423g0010 Nicotiana tabacum HOM05D001009 ORTHO05D000829 4.0e-07 59.3 206 23.8
Nn8g39766 Nelumbo nucifera HOM05D001009 ORTHO05D000829 5.3e-07 58.9 206 23.8
Psat3g135840 Pisum sativum HOM05D001009 ORTHO05D000829 5.3e-07 58.9 198 27.3
Haze_21443 Corylus avellana HOM05D001009 ORTHO05D000829 6.9e-07 58.5 189 23.3
PSO339G1455 Papaver somniferum HOM05D001009 ORTHO05D000829 6.9e-07 58.5 197 26.4
Sopen03g035990 Solanum pennellii HOM05D001009 ORTHO05D000829 6.9e-07 58.5 190 25.8
Carub.0005s2235 Capsella rubella HOM05D001009 ORTHO05D000829 1.2e-06 57.8 204 25.0
THA.LOC104823266 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 1.2e-06 57.8 157 30.6
PSO017G3868 Papaver somniferum HOM05D001009 ORTHO05D000829 1.5e-06 57.4 195 27.7
Peaxi162Scf00332g00332 Petunia axillaris HOM05D001009 ORTHO05D000829 1.5e-06 57.4 207 23.7
Glyma.14G065700 Glycine max HOM05D001009 ORTHO05D000829 2.0e-06 57.0 200 29.5
TAR629G0184 Trochodendron aralioides HOM05D001009 ORTHO05D000829 2.0e-06 57.0 208 23.1
Zm00001eb306190 Zea mays HOM05D007260 ORTHO05D009149 2.0e-06 57.0 104 42.3
Aqoxy2G02348 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 2.6e-06 56.6 189 25.9
HanXRQChr02g0041741 Helianthus annuus HOM05D001009 ORTHO05D000829 2.6e-06 56.6 198 24.7
Sp7g29750 Schrenkiella parvula HOM05D001009 ORTHO05D000829 2.6e-06 56.6 192 24.5
Aqoxy1G00831 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 3.4e-06 56.2 193 24.9
Cfa013083 Carpinus fangiana HOM05D001009 ORTHO05D000829 3.4e-06 56.2 189 22.8
Migut.I00712 Erythranthe guttata HOM05D001009 ORTHO05D000829 3.4e-06 56.2 206 20.9
PGSC0003DMG400014192 Solanum tuberosum HOM05D001009 ORTHO05D000829 3.4e-06 56.2 190 25.8
Thecc.06G039000 Theobroma cacao HOM05D001009 ORTHO05D000829 3.4e-06 56.2 207 23.7
ECA232G3500 Erigeron canadensis HOM05D001009 ORTHO05D000829 4.5e-06 55.8 195 28.7
Manes.09G096200 Manihot esculenta HOM05D001009 ORTHO05D000829 4.5e-06 55.8 198 23.7
GSVIVG01017565001 Vitis vinifera HOM05D001009 ORTHO05D000829 4.5e-06 55.8 192 22.4
Sc11g0007650 Simmondsia chinensis HOM05D001009 ORTHO05D000829 5.8e-06 55.5 195 23.1
arahy.Tifrunner.gnm1.ann1.B3W4AW Arachis hypogaea HOM05D001009 ORTHO05D000829 7.6e-06 55.1 200 28.5
MSTRG.263 Avicennia marina HOM05D001009 ORTHO05D000829 7.6e-06 55.1 195 27.2
CAN.G407.50 Capsicum annuum HOM05D001009 ORTHO05D000829 7.6e-06 55.1 191 23.6
arahy.Tifrunner.gnm1.ann1.U1AIJ2 Arachis hypogaea HOM05D001009 ORTHO05D000829 9.9e-06 54.7 200 28.0
TPR.G38839 Trifolium pratense HOM05D001009 ORTHO05D000829 9.9e-06 54.7 189 22.2


User provided reference genes

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