Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07297 Brassica carinata HOM05D003427 ORTHO05D003927 2.3e-114 415.6 216 100.0
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 5.9e-110 401.0 213 98.6
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 1.0e-109 400.2 213 98.1
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 1.7e-109 399.4 213 97.7
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 2.1e-107 392.5 213 95.8
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 2.8e-104 382.1 214 94.9
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 6.7e-98 360.9 213 90.1
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 1.2e-94 350.1 213 86.9
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 6.5e-93 344.4 213 85.4
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 3.2e-92 342.0 213 84.0
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 2.7e-91 339.0 206 85.4
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 6.1e-91 337.8 213 83.1
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 6.8e-90 334.3 206 82.0
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 1.2e-89 333.6 206 81.6
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 1.2e-89 333.6 213 82.6
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 3.7e-88 328.6 206 83.0
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 3.7e-88 328.6 206 83.0
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 2.4e-87 325.9 206 82.0
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 2.0e-81 306.2 240 70.4
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 2.9e-77 292.4 213 71.8
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 1.1e-68 263.8 215 66.0
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.6e-67 260.0 213 62.4
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.0e-66 257.3 213 62.0
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 1.5e-65 253.4 213 61.0
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 2.0e-65 253.1 213 62.0
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 7.5e-65 251.1 213 61.0
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 7.5e-65 251.1 215 61.4
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 1.3e-64 250.4 214 61.7
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 1.7e-64 250.0 215 60.5
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 3.7e-64 248.8 215 60.9
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 4.9e-64 248.4 215 60.0
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 1.1e-63 247.3 213 59.6
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 2.4e-63 246.1 213 61.5
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 2.4e-63 246.1 215 59.1
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 2.4e-63 246.1 213 61.0
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 3.2e-63 245.7 213 59.2
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 4.1e-63 245.4 213 61.5
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 4.1e-63 245.4 213 59.6
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 9.2e-63 244.2 215 60.0
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 9.2e-63 244.2 215 59.1
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 9.2e-63 244.2 215 59.5
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.6e-62 243.4 213 59.2
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 2.0e-62 243.0 213 59.2
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 2.7e-62 242.7 213 59.2
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 2.7e-62 242.7 213 59.6
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 3.5e-62 242.3 214 60.3
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 3.5e-62 242.3 215 60.0
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 4.6e-62 241.9 213 59.6
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 6.0e-62 241.5 215 58.6
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 6.0e-62 241.5 215 60.0
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 6.0e-62 241.5 213 59.6
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 7.8e-62 241.1 215 59.1
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 7.8e-62 241.1 215 58.1
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 2.3e-61 239.6 213 58.7
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 2.3e-61 239.6 207 59.9
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 3.0e-61 239.2 211 56.4
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.1e-60 237.3 215 58.1
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 2.5e-60 236.1 215 60.5
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 4.3e-60 235.3 212 58.0
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 5.6e-60 235.0 213 56.8
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 5.6e-60 235.0 213 59.6
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 7.3e-60 234.6 213 56.8
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 7.3e-60 234.6 211 60.2
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 9.5e-60 234.2 213 59.2
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 9.5e-60 234.2 214 57.5
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 1.2e-59 233.8 215 57.7
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 1.2e-59 233.8 213 57.7
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 1.6e-59 233.4 215 60.5
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 3.6e-59 232.3 207 59.9
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 3.6e-59 232.3 207 59.9
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 4.7e-59 231.9 211 56.9
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 6.2e-59 231.5 209 59.8
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 8.1e-59 231.1 215 57.2
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.4e-58 230.3 207 58.9
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 1.8e-58 229.9 212 56.6
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.8e-58 229.9 212 57.1
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 1.8e-58 229.9 213 55.9
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 4.0e-58 228.8 211 55.9
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 4.0e-58 228.8 211 55.9
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 5.2e-58 228.4 211 55.0
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 8.9e-58 227.6 213 54.9
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.5e-57 226.9 211 55.0
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 1.5e-57 226.9 212 57.1
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 1.5e-57 226.9 242 53.3
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 1.5e-57 226.9 211 57.3
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 2.0e-57 226.5 214 57.0
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 2.0e-57 226.5 215 57.2
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 4.4e-57 225.3 213 58.2
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 5.8e-57 224.9 213 55.4
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 7.5e-57 224.6 213 55.4
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 1.7e-56 223.4 212 57.1
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 1.7e-56 223.4 211 55.9
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 2.9e-56 222.6 209 55.5
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 4.9e-56 221.9 213 54.9
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 8.3e-56 221.1 213 57.7
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 1.1e-55 220.7 212 54.2
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 1.9e-55 219.9 212 57.5
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 1.9e-55 219.9 214 57.9
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 2.4e-55 219.5 214 53.7
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 3.2e-55 219.2 212 55.7
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 9.2e-55 217.6 210 56.2
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.2e-54 217.2 215 52.6
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.2e-54 217.2 215 52.6
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 1.2e-54 217.2 205 55.6
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 2.1e-54 216.5 212 54.2
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 6.0e-54 214.9 190 57.4
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 7.8e-54 214.5 215 52.1
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 2.3e-53 213.0 213 54.0
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 5.1e-53 211.8 215 52.6
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 5.1e-53 211.8 209 54.1
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.5e-52 210.3 202 55.9
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 3.3e-52 209.1 208 52.9
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 5.6e-52 208.4 215 54.4
Hma1.2p1_0009F.1_g006310 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 5.6e-52 208.4 172 61.0
MD05G1028300 Malus domestica HOM05D003427 ORTHO05D003927 2.1e-51 206.5 240 49.6
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 6.2e-51 204.9 212 51.4
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 3.1e-50 202.6 212 54.2
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 8.9e-50 201.1 210 51.4
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 8.9e-50 201.1 214 52.3
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 1.5e-49 200.3 171 62.6
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 2.0e-49 199.9 217 51.2
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 1.4e-47 193.7 211 49.3
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 2.4e-47 193.0 206 54.9
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.2e-46 190.7 211 50.2
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 1.2e-46 190.7 212 51.4
Atru.chr13.1350 Acer truncatum HOM05D003427 ORTHO05D003927 1.0e-45 187.6 138 68.1
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 3.9e-45 185.7 211 50.7
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 5.1e-45 185.3 213 51.2
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 6.6e-45 184.9 189 51.9
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 6.6e-45 184.9 213 51.2
HPP92_012126 Vanilla planifolia HOM05D003427 ORTHO05D003927 7.3e-44 181.4 214 46.7
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 9.9e-41 171.0 211 45.5
vmacro12551 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 8.4e-40 167.9 166 56.6
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 2.1e-38 163.3 195 47.7
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 4.6e-38 162.2 198 45.5
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 1.3e-37 160.6 210 44.8
Duzib093G1044 Durio zibethinus HOM05D003427 ORTHO05D003927 2.3e-37 159.8 161 53.4
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 1.9e-36 156.8 217 45.6
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 2.5e-36 156.4 209 43.1
arahy.Tifrunner.gnm1.ann1.T4K93Z Arachis hypogaea HOM05D003427 ORTHO05D003927 9.6e-36 154.5 120 61.7
arahy.Tifrunner.gnm1.ann1.WPHY5E Arachis hypogaea HOM05D003427 ORTHO05D003927 9.6e-36 154.5 120 61.7
arahy.Tifrunner.gnm1.ann1.1IHI4J Arachis hypogaea HOM05D003427 ORTHO05D003927 3.6e-35 152.5 120 60.0
arahy.Tifrunner.gnm1.ann1.R476QE Arachis hypogaea HOM05D003427 ORTHO05D003927 3.6e-35 152.5 120 60.0
MD08G1121700 Malus domestica HOM05D003427 ORTHO05D003927 6.2e-35 151.8 213 42.7
Cpa.g.sc36.19 Carica papaya HOM05D003427 ORTHO05D003927 9.0e-34 147.9 143 55.2
SEGI_02547 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.1e-30 136.7 217 36.9
ATR0807G044 Amborella trichopoda HOM05D003427 ORTHO05D003927 7.9e-30 134.8 215 38.6
unitig_32.g11457 Utricularia gibba HOM05D003427 ORTHO05D003927 3.0e-29 132.9 145 51.7
SEGI_06352 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 3.9e-29 132.5 205 36.1
Psat5g133440 Pisum sativum HOM05D003427 ORTHO05D003927 4.3e-28 129.0 142 50.0
MD08G1168800 Malus domestica HOM05D003427 ORTHO05D003927 2.1e-27 126.7 136 50.7
MD15G1354200 Malus domestica HOM05D003427 ORTHO05D003927 1.1e-26 124.4 92 67.4
Psat5g229600 Pisum sativum HOM05D003427 ORTHO05D003927 1.8e-26 123.6 140 49.3
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 3.1e-26 122.9 130 45.4
MSTRG.1469 Avicennia marina HOM05D003427 ORTHO05D003927 4.0e-26 122.5 158 42.4
Pp3c6_15270 Physcomitrium patens HOM05D003427 ORTHO05D003927 1.3e-24 117.5 206 35.4
Pp3c27_680 Physcomitrium patens HOM05D003427 ORTHO05D003927 1.6e-22 110.5 166 35.5
MD08G1170500 Malus domestica HOM05D003427 ORTHO05D003927 2.7e-22 109.8 123 49.6
Lj4A597G14 Lonicera japonica HOM05D003427 ORTHO05D003927 1.0e-21 107.8 73 71.2
SEGI_33607 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 1.8e-21 107.1 184 36.4
SEGI_10482 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 5.6e-20 102.1 184 33.7
Nitab4.5_0001273g0070 Nicotiana tabacum HOM05D003427 ORTHO05D003927 9.6e-20 101.3 204 34.3
SEGI_27083 Sequoiadendron giganteum HOM05D003427 ORTHO05D003927 2.8e-19 99.8 187 34.8
Ah.05g172210 Amaranthus hybridus HOM05D003427 ORTHO05D003927 2.0e-17 93.6 63 71.4
Migut.C01160 Erythranthe guttata HOM05D003427 ORTHO05D003927 2.6e-17 93.2 136 43.4
Aqoxy1G02473 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 8.4e-16 88.2 130 45.4
MD16G1151600 Malus domestica HOM05D003427 ORTHO05D003927 8.4e-16 88.2 61 70.5
vmacro05626 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.9e-15 87.0 148 35.8
CBR_g54098 Chara braunii HOM05D003427 ORTHO05D003927 1.9e-12 77.0 140 35.7
ATR0850G001 Amborella trichopoda HOM05D003427 ORTHO05D003927 1.3e-11 74.3 63 54.0
MD08G1168900 Malus domestica HOM05D003427 ORTHO05D003927 2.9e-08 63.2 86 39.5
unitig_748.g7680 Utricularia gibba HOM05D003427 ORTHO05D003927 6.5e-08 62.0 79 46.8
Ca_14080_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 2.5e-07 60.1 100 32.0
Glyma.04G252050 Glycine max HOM05D003427 ORTHO05D003927 5.5e-07 58.9 99 38.4


User provided reference genes

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