Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.3e-111 406.8 257 100.0
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 7.2e-107 391.0 258 92.2
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 4.7e-106 388.3 260 91.2
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 7.3e-99 364.4 260 92.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 9.8e-80 300.8 260 81.5
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 5.4e-70 268.5 276 64.9
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 9.2e-70 267.7 269 73.2
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.1e-69 266.5 269 72.9
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 3.0e-68 262.7 275 65.5
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 5.1e-68 261.9 277 63.9
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 1.1e-67 260.8 272 67.6
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 1.5e-67 260.4 268 71.6
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 1.5e-67 260.4 268 71.6
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 1.5e-67 260.4 268 71.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.3e-67 259.2 278 63.7
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 7.3e-67 258.1 271 69.0
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-65 253.8 279 63.1
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 4.2e-62 242.3 280 62.1
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 6.0e-61 238.4 274 60.6
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 5.6e-59 231.9 287 64.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 2.1e-53 213.4 214 72.9
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 3.7e-50 202.6 233 60.9
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 2.4e-49 199.9 260 64.6
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.7e-39 167.2 285 47.4
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.2e-32 144.4 310 41.9
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 3.8e-31 139.4 308 37.7
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.1e-21 107.1 286 36.4
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 2.7e-21 106.7 288 39.6
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 6.1e-21 105.5 88 62.5
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.9e-21 105.1 288 39.2
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.8e-20 104.0 259 37.1
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.0e-20 103.2 351 38.2
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 3.0e-20 103.2 338 32.2
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 8.8e-20 101.7 85 62.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.8e-20 101.7 335 37.0
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 8.8e-20 101.7 343 30.6
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.1e-19 101.3 354 36.2
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.1e-19 101.3 116 50.0
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 1.1e-19 101.3 100 58.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 2.0e-19 100.5 113 52.2
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 2.6e-19 100.1 267 38.6
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 3.3e-19 99.8 116 50.9
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.3e-19 99.8 107 54.2
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 4.4e-19 99.4 333 30.0
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 5.7e-19 99.0 102 53.9
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 5.7e-19 99.0 116 54.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 7.4e-19 98.6 105 52.4
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 9.7e-19 98.2 116 56.0
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 1.3e-18 97.8 120 49.2
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 1.7e-18 97.4 120 46.7
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.2e-18 97.1 346 33.5
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 2.2e-18 97.1 117 49.6
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.2e-18 97.1 126 49.2
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 2.2e-18 97.1 115 47.8
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 3.7e-18 96.3 114 50.9
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.7e-18 96.3 98 67.3
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 4.8e-18 95.9 127 45.7
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 4.8e-18 95.9 128 46.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 4.8e-18 95.9 125 44.8
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 6.3e-18 95.5 124 46.0
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 6.3e-18 95.5 125 49.6
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 6.3e-18 95.5 128 46.1
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 6.3e-18 95.5 128 46.9
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 8.2e-18 95.1 122 47.5
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.1e-17 94.7 115 47.0
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.4e-17 94.4 302 42.7
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.4e-17 94.4 335 32.2
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.4e-17 94.4 118 55.9
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.8e-17 94.0 349 30.4
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.8e-17 94.0 130 44.6
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.8e-17 94.0 130 44.6
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.8e-17 94.0 101 53.5
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.8e-17 94.0 101 61.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.4e-17 93.6 99 50.5
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 2.4e-17 93.6 110 48.2
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.4e-17 93.6 325 33.8
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.4e-17 93.6 115 47.0
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.1e-17 93.2 87 55.2
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 3.1e-17 93.2 123 47.2
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 3.1e-17 93.2 114 47.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 4.1e-17 92.8 117 49.6
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.1e-17 92.8 130 52.3
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 4.1e-17 92.8 138 41.3
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 5.3e-17 92.4 115 57.4
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 5.3e-17 92.4 101 50.5
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 5.3e-17 92.4 321 36.8
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 6.9e-17 92.0 287 30.7
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 6.9e-17 92.0 129 45.0
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 9.1e-17 91.7 338 38.2
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 9.1e-17 91.7 354 30.8
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 9.1e-17 91.7 123 54.5
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 1.2e-16 91.3 129 44.2
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.2e-16 91.3 143 43.4
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-16 90.9 119 54.6
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 1.5e-16 90.9 138 41.3
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.5e-16 90.9 105 49.5
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.5e-16 90.9 111 47.7
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.5e-16 90.9 257 31.1
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.0e-16 90.5 138 42.0
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 2.0e-16 90.5 300 29.7
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 2.0e-16 90.5 138 42.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.6e-16 90.1 130 43.1
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.6e-16 90.1 121 45.5
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 2.6e-16 90.1 123 54.5
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 2.6e-16 90.1 370 33.2
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 2.6e-16 90.1 345 32.5
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.6e-16 90.1 103 51.5
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 3.4e-16 89.7 138 40.6
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.4e-16 89.7 138 40.6
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 4.5e-16 89.4 144 40.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.5e-16 89.4 117 55.6
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.5e-16 89.4 97 50.5
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 4.5e-16 89.4 97 50.5
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 7.7e-16 88.6 204 38.7
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 7.7e-16 88.6 137 40.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 7.7e-16 88.6 138 40.6
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 7.7e-16 88.6 101 50.5
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 7.7e-16 88.6 343 29.7
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.0e-15 88.2 117 50.4
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 1.3e-15 87.8 165 38.2
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.7e-15 87.4 115 54.8
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 2.2e-15 87.0 94 50.0
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.2e-15 87.0 390 27.7
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 2.2e-15 87.0 45 84.4
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.8e-15 86.3 356 33.1
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 5.0e-15 85.9 112 54.5
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 5.0e-15 85.9 43 86.0
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 6.5e-15 85.5 41 87.8
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 8.5e-15 85.1 363 30.0
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 8.5e-15 85.1 40 90.0
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 8.5e-15 85.1 123 43.9
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.1e-14 84.7 179 36.9
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.4e-14 84.3 90 50.0
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.4e-14 84.3 39 92.3
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.5e-14 83.6 93 48.4
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 2.5e-14 83.6 112 55.4
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 2.5e-14 83.6 119 42.0
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 3.2e-14 83.2 39 89.7
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 4.2e-14 82.8 158 45.6
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.2e-14 82.8 48 77.1
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 4.2e-14 82.8 119 39.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 5.5e-14 82.4 43 81.4
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 7.2e-14 82.0 158 45.6
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 7.2e-14 82.0 367 28.1
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 7.2e-14 82.0 37 91.9
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 7.2e-14 82.0 37 91.9
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.2e-13 81.3 46 78.3
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.6e-13 80.9 367 28.1
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 4.7e-13 79.3 42 81.0
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.0e-12 78.2 35 94.3
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.8e-12 77.4 175 30.3
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.8e-12 77.4 39 79.5
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 3.0e-12 76.6 405 29.6
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 3.0e-12 76.6 40 80.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 8.8e-12 75.1 91 46.2
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.1e-11 74.7 45 71.1
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.7e-11 72.4 45 66.7
BcaB01g03437 Brassica carinata HOM05D003648 ORTHO05D004267 2.8e-10 70.1 56 75.0
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.8e-10 70.1 45 62.2
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 4.8e-10 69.3 258 29.5
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.8e-10 69.3 44 63.6
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.4e-09 67.0 49 59.2
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 2.6e-08 63.5 103 37.9
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.5e-08 62.8 36 69.4
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 1.7e-07 60.8 30 83.3
Gohir.A01G190633 Gossypium hirsutum HOM05D014635 ORTHO05D014310 1.9e-06 57.4 84 39.3
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 4.2e-06 56.2 39 56.4
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 4.2e-06 56.2 37 59.5


User provided reference genes

Program Settings