Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 3.7e-85 318.2 161 100.0
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 3.7e-85 318.2 161 100.0
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 3.7e-85 318.2 161 100.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 5.4e-84 314.3 161 98.8
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 4.6e-83 311.2 158 98.7
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.0e-82 310.1 158 98.1
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 5.0e-82 307.8 161 96.3
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 5.0e-82 307.8 161 96.3
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 5.0e-82 307.8 161 96.3
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 5.0e-82 307.8 161 96.3
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 1.5e-81 306.2 161 95.7
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 4.4e-78 294.7 161 93.8
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.8e-78 294.3 161 93.8
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 1.7e-77 292.7 161 91.9
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 2.9e-77 292.0 161 92.5
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 1.1e-76 290.0 161 90.7
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 3.5e-75 285.0 161 90.1
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 3.0e-74 282.0 161 87.6
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 8.6e-74 280.4 161 87.0
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.2e-72 276.6 161 85.7
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.8e-71 272.7 161 85.1
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 4.4e-70 268.1 161 82.0
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 1.5e-65 253.1 149 81.2
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 2.8e-64 248.8 161 74.5
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.8e-64 248.8 161 74.5
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.8e-64 248.8 161 74.5
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.8e-64 248.8 161 74.5
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.8e-64 248.8 161 74.5
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 2.8e-64 248.8 161 74.5
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 2.8e-64 248.8 149 79.9
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 3.6e-64 248.4 155 77.4
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 3.6e-64 248.4 161 75.2
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 1.4e-63 246.5 156 74.4
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.4e-63 246.5 143 85.3
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 3.1e-63 245.4 149 77.9
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 4.0e-63 245.0 161 73.9
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 5.2e-63 244.6 159 74.2
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 5.2e-63 244.6 161 73.3
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 6.9e-63 244.2 156 74.4
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.0e-63 243.8 149 78.5
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 9.0e-63 243.8 149 78.5
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 9.0e-63 243.8 161 72.7
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 1.2e-62 243.4 159 72.3
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.2e-62 243.4 159 73.6
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.2e-62 243.4 155 76.1
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 2.6e-62 242.3 159 73.6
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.4e-62 241.9 156 75.0
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 7.6e-62 240.7 159 72.3
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.3e-61 240.0 161 72.0
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 1.7e-61 239.6 149 77.2
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 2.2e-61 239.2 155 73.5
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 3.8e-61 238.4 161 72.0
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 3.8e-61 238.4 149 73.8
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 3.8e-61 238.4 156 71.8
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.1e-60 236.9 156 71.2
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.1e-60 236.9 149 73.8
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.4e-60 236.5 156 72.4
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.4e-60 236.5 149 75.8
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 1.4e-60 236.5 149 75.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 2.4e-60 235.7 149 75.8
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 2.4e-60 235.7 149 75.8
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 3.2e-60 235.3 149 72.5
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.2e-60 235.0 156 70.5
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 5.4e-60 234.6 155 72.3
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 5.4e-60 234.6 150 74.0
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 5.4e-60 234.6 148 76.4
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.4e-60 234.6 149 73.2
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 9.3e-60 233.8 159 70.4
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 9.3e-60 233.8 157 70.7
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.2e-59 233.4 156 71.2
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.2e-59 233.4 156 71.2
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 1.6e-59 233.0 155 71.0
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.1e-59 232.6 159 69.8
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 2.7e-59 232.3 156 70.5
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.7e-59 232.3 156 69.9
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.7e-59 232.3 160 70.6
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.7e-59 232.3 148 75.7
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.5e-59 231.9 149 75.8
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 4.6e-59 231.5 155 70.3
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 6.0e-59 231.1 149 75.8
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 7.8e-59 230.7 153 73.2
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 7.8e-59 230.7 148 75.7
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.0e-58 230.3 155 70.3
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.0e-58 230.3 159 69.2
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 1.0e-58 230.3 149 74.5
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.3e-58 229.9 155 72.9
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.0e-58 228.8 149 73.8
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 5.1e-58 228.0 155 69.0
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 5.1e-58 228.0 149 73.8
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 6.6e-58 227.6 155 71.6
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 1.9e-57 226.1 159 70.4
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 1.9e-57 226.1 149 71.8
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.9e-57 226.1 149 71.8
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 1.6e-56 223.0 155 67.7
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 2.1e-56 222.6 156 68.6
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 2.8e-56 222.2 161 67.1
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 2.8e-56 222.2 158 69.0
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.4e-55 219.9 149 67.8
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 2.4e-55 219.2 146 72.6
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 5.3e-55 218.0 133 78.2
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 9.0e-55 217.2 149 69.1
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 1.2e-54 216.9 158 67.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.2e-54 216.9 156 66.7
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 3.4e-54 215.3 156 65.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 4.5e-54 214.9 205 55.6
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 5.8e-54 214.5 156 66.7
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 7.6e-54 214.2 161 66.5
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 9.9e-54 213.8 149 69.8
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.3e-53 213.4 163 66.9
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.3e-53 213.4 163 66.9
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.3e-53 213.4 135 76.3
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 3.2e-52 208.8 159 61.6
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 3.2e-52 208.8 149 68.5
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 2.1e-51 206.1 146 68.5
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 1.3e-50 203.4 125 77.6
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.0e-50 202.2 146 65.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 3.9e-50 201.8 140 69.3
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.1e-49 200.3 245 46.9
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 2.4e-47 192.6 122 77.0
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 2.4e-47 192.6 162 63.0
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 7.6e-46 187.6 101 94.1
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 1.9e-44 183.0 212 47.2
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 5.5e-44 181.4 110 78.2
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 7.1e-44 181.0 160 54.4
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 9.3e-44 180.6 140 68.6
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 1.2e-43 180.3 163 57.1
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 2.3e-42 176.0 124 69.4
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 1.5e-38 163.3 292 36.6
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 3.4e-38 162.2 182 47.3
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 6.5e-37 157.9 140 60.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 4.2e-36 155.2 148 66.2
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.1e-35 152.9 77 96.1
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 3.9e-34 148.7 149 50.3
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 9.7e-33 144.1 149 50.3
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.2e-32 142.9 149 49.7
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.2e-30 137.1 89 74.2
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 1.0e-29 134.0 150 46.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.3e-29 133.7 148 52.0
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 6.5e-29 131.3 109 61.5
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 7.2e-28 127.9 85 75.3
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 6.7e-26 121.3 143 45.5
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 7.4e-25 117.9 103 68.9
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 1.3e-24 117.1 78 79.5
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.5e-22 110.2 126 43.7
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.5e-20 101.7 72 68.1
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.5e-20 101.7 72 68.1
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 1.2e-19 100.5 65 72.3
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-19 100.1 65 72.3
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 2.3e-18 96.3 64 71.9
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.1e-17 94.0 127 40.9
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 3.3e-17 92.4 64 68.8
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 8.8e-10 67.8 146 34.9
AT3G57900 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 4.4e-09 65.5 96 43.8
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 9.7e-09 64.3 145 30.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 3.5e-06 55.8 45 60.0


User provided reference genes

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