Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07227 Brassica carinata HOM05D003819 ORTHO05D005291 0.0e+00 1367.1 690 100.0
C04p69840 Brassica napus HOM05D003819 ORTHO05D005291 0.0e+00 1367.1 690 100.0
BolC4t28484H Brassica oleracea HOM05D003819 ORTHO05D005291 0.0e+00 1367.1 690 100.0
BraA04t18686Z Brassica rapa HOM05D003819 ORTHO05D005291 0.0e+00 1320.8 686 96.9
A04p32330 Brassica napus HOM05D003819 ORTHO05D005291 0.0e+00 1314.7 686 96.6
BcaB06g29258 Brassica carinata HOM05D003819 ORTHO05D005291 0.0e+00 1291.6 690 94.3
Sp4g24760 Schrenkiella parvula HOM05D003819 ORTHO05D005291 0.0e+00 1237.6 700 88.6
BcaNung03224 Brassica carinata HOM05D003819 ORTHO05D005291 0.0e+00 1203.3 691 87.0
C04p03960 Brassica napus HOM05D003819 ORTHO05D005291 0.0e+00 1199.5 689 87.7
AL4G41180 Arabidopsis lyrata HOM05D003819 ORTHO05D005291 0.0e+00 1198.7 696 85.9
AT2G42620 Arabidopsis thaliana HOM05D003819 ORTHO05D005291 0.0e+00 1183.7 694 84.9
BolC4t22032H Brassica oleracea HOM05D003819 ORTHO05D005291 0.0e+00 1180.6 716 83.9
CARHR137760 Cardamine hirsuta HOM05D003819 ORTHO05D005291 0.0e+00 1178.3 697 84.5
BcaC02g12429 Brassica carinata HOM05D003819 ORTHO05D005291 0.0e+00 1158.7 716 82.7
Aa31LG1G24420 Aethionema arabicum HOM05D003819 ORTHO05D005291 0.0e+00 1136.7 706 80.0
Thhalv10017925m.g Eutrema salsugineum HOM05D003819 ORTHO05D005291 8.2e-307 1056.6 704 80.1
THA.LOC104802258 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 4.5e-297 1024.2 689 74.0
Cpa.g.sc52.168 Carica papaya HOM05D003819 ORTHO05D005291 6.2e-262 907.5 695 66.2
COL.COLO4_33586 Corchorus olitorius HOM05D003819 ORTHO05D005291 3.9e-256 888.3 699 63.5
Gorai.008G099500 Gossypium raimondii HOM05D003819 ORTHO05D005291 2.5e-255 885.6 702 63.7
Gohir.D12G091900 Gossypium hirsutum HOM05D003819 ORTHO05D005291 2.1e-254 882.5 702 63.7
Gohir.A12G077800 Gossypium hirsutum HOM05D003819 ORTHO05D005291 4.7e-254 881.3 702 63.5
Carub.0004s2507 Capsella rubella HOM05D003819 ORTHO05D005291 3.1e-253 878.6 540 82.8
Duzib264G1063 Durio zibethinus HOM05D003819 ORTHO05D005291 8.9e-253 877.1 705 62.6
Potri.014G142600 Populus trichocarpa HOM05D003819 ORTHO05D005291 8.4e-251 870.5 704 62.4
Thecc.01G151000 Theobroma cacao HOM05D003819 ORTHO05D005291 2.1e-249 865.9 710 62.3
Eucgr.K01130 Eucalyptus grandis HOM05D003819 ORTHO05D005291 6.0e-249 864.4 699 64.1
Cfa023595 Carpinus fangiana HOM05D003819 ORTHO05D005291 3.0e-248 862.1 713 62.7
CiPaw.03G195200 Carya illinoinensis HOM05D003819 ORTHO05D005291 3.9e-248 861.7 726 62.5
Prupe.3G117700 Prunus persica HOM05D003819 ORTHO05D005291 2.8e-246 855.5 733 60.7
Actinidia11157 Actinidia chinensis HOM05D003819 ORTHO05D005291 3.6e-246 855.1 707 61.2
Atru.chr6.2788 Acer truncatum HOM05D003819 ORTHO05D005291 4.7e-246 854.7 700 62.7
Sabra14G0107700 Salix brachista HOM05D003819 ORTHO05D005291 4.7e-246 854.7 704 61.2
FAN02G3241 Fragaria x ananassa HOM05D003819 ORTHO05D005291 9.0e-245 850.5 725 60.0
FAN05G0664 Fragaria x ananassa HOM05D003819 ORTHO05D005291 1.5e-244 849.7 720 60.6
FAN09G4766 Fragaria x ananassa HOM05D003819 ORTHO05D005291 3.4e-244 848.6 725 60.0
PGR142G0379 Punica granatum HOM05D003819 ORTHO05D005291 9.9e-244 847.0 713 63.1
ClCG07G002740 Citrullus lanatus HOM05D003819 ORTHO05D005291 1.3e-243 846.7 720 60.1
RcHm_v2.0_Chr2g0129761 Rosa chinensis HOM05D003819 ORTHO05D005291 1.7e-243 846.3 722 59.8
FvH4_6g27480 Fragaria vesca HOM05D003819 ORTHO05D005291 2.2e-243 845.9 726 59.9
MELO3C018720.2 Cucumis melo HOM05D003819 ORTHO05D005291 3.8e-243 845.1 718 59.7
QL08p041841 Quercus lobata HOM05D003819 ORTHO05D005291 3.2e-242 842.0 715 62.2
FAN14G1852 Fragaria x ananassa HOM05D003819 ORTHO05D005291 4.2e-242 841.6 726 59.6
CANSAT64G0548 Cannabis sativa HOM05D003819 ORTHO05D005291 1.7e-240 836.3 698 61.3
Lsat_1_v5_gn_8_141221 Lactuca sativa HOM05D003819 ORTHO05D005291 2.3e-240 835.9 692 60.4
Sed0027609 Sechium edule HOM05D003819 ORTHO05D005291 2.3e-240 835.9 721 59.4
HanXRQChr17g0558991 Helianthus annuus HOM05D003819 ORTHO05D005291 3.9e-240 835.1 684 61.0
CsaV3_7G005710 Cucumis sativus L. HOM05D003819 ORTHO05D005291 1.1e-239 833.6 718 59.2
Rhsim06G0130800 Rhododendron simsii HOM05D003819 ORTHO05D005291 1.1e-239 833.6 731 59.5
MD09G1236800 Malus domestica HOM05D003819 ORTHO05D005291 1.5e-239 833.2 721 59.1
TAR629G3160 Trochodendron aralioides HOM05D003819 ORTHO05D005291 1.5e-239 833.2 731 58.8
MD17G1266700 Malus domestica HOM05D003819 ORTHO05D005291 1.9e-239 832.8 726 59.8
Migut.M00265 Erythranthe guttata HOM05D003819 ORTHO05D005291 5.6e-239 831.2 713 60.4
Lalb_Chr03g0029931 Lupinus albus HOM05D003819 ORTHO05D005291 1.6e-238 829.7 709 60.6
PGSC0003DMG400035320 Solanum tuberosum HOM05D003819 ORTHO05D005291 3.6e-238 828.6 712 60.5
ECA233G0398 Erigeron canadensis HOM05D003819 ORTHO05D005291 1.1e-237 827.0 696 60.5
Lj1P684T13 Lonicera japonica HOM05D003819 ORTHO05D005291 2.6e-236 822.4 698 60.0
VMungo1127G0295 Vigna mungo HOM05D003819 ORTHO05D005291 3.4e-236 822.0 713 59.3
Nitab4.5_0000249g0240 Nicotiana tabacum HOM05D003819 ORTHO05D005291 5.8e-236 821.2 723 59.9
GSVIVG01020711001 Vitis vinifera HOM05D003819 ORTHO05D005291 2.9e-235 818.9 695 60.3
Phvul.011G129700 Phaseolus vulgaris HOM05D003819 ORTHO05D005291 1.1e-234 817.0 715 58.9
Nitab4.5_0006875g0030 Nicotiana tabacum HOM05D003819 ORTHO05D005291 1.9e-234 816.2 723 59.2
Sopen07g027110 Solanum pennellii HOM05D003819 ORTHO05D005291 1.9e-234 816.2 710 59.0
Ciclev10014472m.g Citrus clementina HOM05D003819 ORTHO05D005291 5.4e-234 814.7 697 59.4
Lj3g0009870 Lotus japonicus HOM05D003819 ORTHO05D005291 2.7e-233 812.4 714 58.3
Ca_18872_v3 Cicer arietinum L. HOM05D003819 ORTHO05D005291 1.3e-232 810.1 705 58.4
CSS0043691 Camellia sinensis var. sinensis HOM05D003819 ORTHO05D005291 1.8e-232 809.7 727 58.5
Medtr4g080020 Medicago truncatula HOM05D003819 ORTHO05D005291 3.9e-232 808.5 714 57.8
Glyma.12G128600 Glycine max HOM05D003819 ORTHO05D005291 5.1e-232 808.1 710 58.2
MSTRG.15087 Avicennia marina HOM05D003819 ORTHO05D005291 1.1e-231 807.0 715 57.8
Nitab4.5_0013227g0010 Nicotiana tabacum HOM05D003819 ORTHO05D005291 2.1e-230 802.7 725 58.2
Cc05_g08390 Coffea canephora HOM05D003819 ORTHO05D005291 8.1e-230 800.8 717 56.9
DCAR_021294 Daucus carota HOM05D003819 ORTHO05D005291 8.1e-230 800.8 723 58.0
Sopen12g006260 Solanum pennellii HOM05D003819 ORTHO05D005291 2.4e-229 799.3 719 58.4
SalBow7G4473 Salvia bowleyana HOM05D003819 ORTHO05D005291 3.1e-229 798.9 714 57.7
Solyc12g010900.1 Solanum lycopersicum HOM05D003819 ORTHO05D005291 3.1e-229 798.9 720 58.6
Lalb_Chr22g0356941 Lupinus albus HOM05D003819 ORTHO05D005291 2.0e-228 796.2 727 56.8
Glyma.06G277000 Glycine max HOM05D003819 ORTHO05D005291 4.5e-228 795.0 711 57.8
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 9.9e-228 793.9 714 58.4
PSO675G1769 Papaver somniferum HOM05D003819 ORTHO05D005291 3.8e-227 792.0 729 56.7
Psat7g136560 Pisum sativum HOM05D003819 ORTHO05D005291 8.4e-227 790.8 730 56.7
PGSC0003DMG400007856 Solanum tuberosum HOM05D003819 ORTHO05D005291 7.1e-226 787.7 721 57.8
CAN.G1148.8 Capsicum annuum HOM05D003819 ORTHO05D005291 3.5e-225 785.4 720 57.5
COL.COLO4_31287 Corchorus olitorius HOM05D003819 ORTHO05D005291 4.6e-225 785.0 695 59.3
Cc00_g28410 Coffea canephora HOM05D003819 ORTHO05D005291 3.9e-224 781.9 717 55.9
SGA_v2.0_scaffold9G04831 Striga asiatica HOM05D003819 ORTHO05D005291 4.3e-223 778.5 705 56.6
Ah.01g003580 Amaranthus hybridus HOM05D003819 ORTHO05D005291 8.2e-222 774.2 700 57.0
CAN.G1081.14 Capsicum annuum HOM05D003819 ORTHO05D005291 1.4e-221 773.5 716 57.5
EL10Ac9g20949 Beta vulgaris HOM05D003819 ORTHO05D005291 3.4e-220 768.8 706 57.4
AUR62042109 Chenopodium quinoa HOM05D003819 ORTHO05D005291 4.5e-220 768.5 710 56.9
MBI06_g08600_MAGBIO Magnolia biondii HOM05D003819 ORTHO05D005291 5.8e-220 768.1 711 56.4
Aqoxy1G02044 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 1.7e-219 766.5 726 54.7
Sabra11G0048300 Salix brachista HOM05D003819 ORTHO05D005291 3.8e-219 765.4 686 56.6
TWI14G0201 Tripterygium wilfordii HOM05D003819 ORTHO05D005291 3.8e-219 765.4 700 57.7
Solyc07g055120.4 Solanum lycopersicum HOM05D003819 ORTHO05D005291 8.4e-219 764.2 710 56.8
Sc21g0004140 Simmondsia chinensis HOM05D003819 ORTHO05D005291 2.5e-218 762.7 711 57.1
Manes.17G056400 Manihot esculenta HOM05D003819 ORTHO05D005291 4.2e-218 761.9 695 57.4
Potri.011G066700 Populus trichocarpa HOM05D003819 ORTHO05D005291 4.2e-218 761.9 688 56.7
Haze_13379 Corylus avellana HOM05D003819 ORTHO05D005291 3.0e-216 755.7 706 57.8
Duzib235G0786 Durio zibethinus HOM05D003819 ORTHO05D005291 3.3e-215 752.3 696 57.5
Manes.17G056300 Manihot esculenta HOM05D003819 ORTHO05D005291 1.3e-214 750.4 689 56.3
Dinv07714 Davidia involucrata HOM05D003819 ORTHO05D005291 1.1e-213 747.3 725 54.5
Peaxi162Scf00384g00211 Petunia axillaris HOM05D003819 ORTHO05D005291 1.5e-212 743.4 721 56.0
Gorai.010G159500 Gossypium raimondii HOM05D003819 ORTHO05D005291 1.9e-210 736.5 689 56.6
Gohir.A06G131200 Gossypium hirsutum HOM05D003819 ORTHO05D005291 1.6e-209 733.4 689 56.9
PSO229G0146 Papaver somniferum HOM05D003819 ORTHO05D005291 3.6e-209 732.3 726 54.1
QL05p047385 Quercus lobata HOM05D003819 ORTHO05D005291 2.3e-208 729.6 694 56.2
Oeu058996.1 Olea europaea HOM05D003819 ORTHO05D005291 3.0e-208 729.2 698 55.3
Dinv16776 Davidia involucrata HOM05D003819 ORTHO05D005291 4.5e-204 715.3 705 55.5
CiPaw.09G070200 Carya illinoinensis HOM05D003819 ORTHO05D005291 3.2e-202 709.1 705 53.6
Ciclev10017759m.g Citrus clementina HOM05D003819 ORTHO05D005291 3.0e-200 702.6 704 53.3
Gorai.011G039300 Gossypium raimondii HOM05D003819 ORTHO05D005291 3.3e-199 699.1 687 54.6
Gohir.D10G037300 Gossypium hirsutum HOM05D003819 ORTHO05D005291 7.4e-199 698.0 687 54.4
Gohir.A10G036700 Gossypium hirsutum HOM05D003819 ORTHO05D005291 3.5e-196 689.1 653 55.4
Atru.chr10.1659 Acer truncatum HOM05D003819 ORTHO05D005291 1.3e-195 687.2 688 53.5
CDE10G0290 Ceratophyllum demersum HOM05D003819 ORTHO05D005291 2.9e-195 686.0 716 52.2
Gohir.D06G137250 Gossypium hirsutum HOM05D003819 ORTHO05D005291 7.2e-194 681.4 679 54.6
AUR62040526 Chenopodium quinoa HOM05D003819 ORTHO05D005291 4.7e-193 678.7 680 54.0
Nn1g09185 Nelumbo nucifera HOM05D003819 ORTHO05D005291 1.2e-188 664.1 565 59.1
Lj3g0006196 Lotus japonicus HOM05D003819 ORTHO05D005291 3.8e-187 659.1 701 51.1
Peaxi162Scf00469g00034 Petunia axillaris HOM05D003819 ORTHO05D005291 4.2e-186 655.6 562 59.8
vmacro12379 Vaccinium macrocarpon HOM05D003819 ORTHO05D005291 9.7e-183 644.4 731 50.9
THA.LOC104813346 Tarenaya hassleriana HOM05D003819 ORTHO05D005291 2.8e-182 642.9 691 48.8
ATR0602G021 Amborella trichopoda HOM05D003819 ORTHO05D005291 9.1e-181 637.9 692 48.7
Dinv40684 Davidia involucrata HOM05D003819 ORTHO05D005291 2.2e-179 633.3 700 51.7
Zm00001eb376660 Zea mays HOM05D003819 ORTHO05D005291 2.7e-172 609.8 714 46.9
Zm00001eb270950 Zea mays HOM05D003819 ORTHO05D005291 5.9e-172 608.6 715 47.0
Os06g0154200 Oryza sativa ssp. japonica HOM05D003819 ORTHO05D005291 1.1e-170 604.4 722 46.5
SEGI_05136 Sequoiadendron giganteum HOM05D003819 ORTHO05D005291 9.5e-170 601.3 844 41.4
Haze_06225 Corylus avellana HOM05D003819 ORTHO05D005291 3.4e-167 592.8 661 48.9
Mapoly0113s0006 Marchantia polymorpha HOM05D003819 ORTHO05D005291 5.8e-143 512.3 761 39.4
SMO118G0454 Selaginella moellendorffii HOM05D003819 ORTHO05D005291 7.1e-141 505.4 701 41.7
Pp3c17_1180 Physcomitrium patens HOM05D003819 ORTHO05D005291 1.0e-139 501.5 805 38.4
Thecc.06G169900 Theobroma cacao HOM05D003819 ORTHO05D005291 5.2e-136 489.2 505 53.7
Actinidia10955 Actinidia chinensis HOM05D003819 ORTHO05D005291 4.3e-130 469.5 494 51.2
RcHm_v2.0_Chr2g0128411 Rosa chinensis HOM05D003819 ORTHO05D005291 1.9e-125 454.1 354 63.3
unitig_85.g27374 Utricularia gibba HOM05D003819 ORTHO05D005291 5.3e-112 409.5 342 59.4
SHI10509 Sapria himalayana HOM05D003819 ORTHO05D005291 5.8e-111 406.0 376 55.6
Lj3g0028116 Lotus japonicus HOM05D003819 ORTHO05D005291 5.0e-102 376.3 418 49.0
RcHm_v2.0_Chr2g0128401 Rosa chinensis HOM05D003819 ORTHO05D005291 1.3e-99 368.2 340 55.9
Thecc.K0007200 Theobroma cacao HOM05D003819 ORTHO05D005291 5.1e-91 339.7 234 70.5
AagrBONN_evm.TU.Sc2ySwM_228.1793 Anthoceros agrestis HOM05D003819 ORTHO05D005291 4.1e-88 330.1 914 29.0
unitig_85.g27373 Utricularia gibba HOM05D003819 ORTHO05D005291 5.3e-88 329.7 320 51.6
A05p03380 Brassica napus HOM05D003819 ORTHO05D005291 1.0e-75 288.9 179 79.9
Cfa000614 Carpinus fangiana HOM05D003819 ORTHO05D005291 4.0e-75 287.0 385 44.4
Oeu053232.1 Olea europaea HOM05D003819 ORTHO05D005291 3.0e-67 260.8 418 38.0
Atru.chr11.57 Acer truncatum HOM05D003819 ORTHO05D005291 1.8e-64 251.5 439 37.8
Ciclev10026180m.g Citrus clementina HOM05D003819 ORTHO05D005291 9.2e-48 196.1 185 55.1
Nn2g14348 Nelumbo nucifera HOM05D003819 ORTHO05D023588 3.7e-41 174.1 144 58.3
AUR62037398 Chenopodium quinoa HOM05D003819 ORTHO05D005291 2.5e-37 161.4 99 76.8
Dinv24544 Davidia involucrata HOM05D003819 ORTHO05D005291 7.3e-37 159.8 146 52.7
A05p03390 Brassica napus HOM05D003819 ORTHO05D019686 2.1e-36 158.3 85 91.8
FvH4_4g05521 Fragaria vesca HOM05D003819 ORTHO05D005291 4.1e-32 144.1 120 57.5
Nn6g34429 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.8e-25 120.9 93 57.0
Lalb_Chr14g0367511 Lupinus albus HOM05D003819 ORTHO05D005291 1.1e-24 119.4 78 71.8
Aqoxy450s002 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 3.2e-24 117.9 100 57.0
Aqoxy7G03214 Aquilegia oxysepala HOM05D003819 ORTHO05D019686 3.2e-24 117.9 100 57.0
BcaC02g12428 Brassica carinata HOM05D003819 ORTHO05D032918 5.4e-24 117.1 69 78.3
Nn1g05661 Nelumbo nucifera HOM05D003819 ORTHO05D005291 6.6e-22 110.2 77 67.5
C04p03970 Brassica napus HOM05D003819 ORTHO05D032918 1.9e-21 108.6 62 79.0
BolC4t22033H Brassica oleracea HOM05D003819 ORTHO05D032918 2.1e-20 105.1 62 77.4
FvH4_2g05661 Fragaria vesca HOM05D003819 ORTHO05D025473 2.1e-20 105.1 113 54.0
Aqoxy450s003 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 3.1e-19 101.3 90 52.2
Aqoxy7G03213 Aquilegia oxysepala HOM05D003819 ORTHO05D023588 3.1e-19 101.3 90 52.2
FvH4_2g12921 Fragaria vesca HOM05D003819 ORTHO05D025473 8.9e-19 99.8 95 56.8
Nn1g05873 Nelumbo nucifera HOM05D003819 ORTHO05D005291 3.8e-17 94.4 80 61.2
Mapoly0086s0086 Marchantia polymorpha HOM05D003819 ORTHO05D038376 1.0e-14 86.3 439 23.5
Cc02_g34240 Coffea canephora HOM05D003819 ORTHO05D023588 2.3e-14 85.1 73 54.8
Psat3g013160 Pisum sativum HOM05D003819 ORTHO05D005291 3.0e-14 84.7 140 35.0
Psat7g136520 Pisum sativum HOM05D003819 ORTHO05D005291 1.1e-11 76.3 76 52.6
Haze_22749 Corylus avellana HOM05D003819 ORTHO05D005291 1.8e-11 75.5 62 59.7
Nn1g05663 Nelumbo nucifera HOM05D003819 ORTHO05D019686 2.4e-11 75.1 49 69.4
Haze_02876 Corylus avellana HOM05D000448 ORTHO05D000291 2.6e-10 71.6 48 66.7
Nn3g18421 Nelumbo nucifera HOM05D003819 ORTHO05D019686 9.9e-10 69.7 54 51.9
BcaNung03225 Brassica carinata HOM05D002616 ORTHO05D000256 1.3e-09 69.3 40 87.5
Aqoxy7G03215 Aquilegia oxysepala HOM05D003819 ORTHO05D005291 2.9e-09 68.2 75 44.0
Nn5g28220 Nelumbo nucifera HOM05D003819 ORTHO05D019686 3.8e-09 67.8 48 58.3
Psat1g205040 Pisum sativum HOM05D003819 ORTHO05D005291 1.1e-08 66.2 274 25.5
arahy.Tifrunner.gnm1.ann1.F6HDT7 Arachis hypogaea HOM05D001219 ORTHO05D001017 7.1e-08 63.5 279 25.4
arahy.Tifrunner.gnm1.ann1.JW8Z9M Arachis hypogaea HOM05D001219 ORTHO05D001017 2.1e-07 62.0 279 25.1
COL.COLO4_26644 Corchorus olitorius HOM05D001219 ORTHO05D001017 3.0e-06 58.2 281 24.6
FAN13G0265 Fragaria x ananassa HOM05D002813 ORTHO05D003203 3.0e-06 58.2 180 28.3
SMO174G0051 Selaginella moellendorffii HOM05D000530 ORTHO05D000621 6.7e-06 57.0 264 26.5


User provided reference genes

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