Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07197 Brassica carinata HOM05D001997 ORTHO05D004620 0.0e+00 1145.6 618 100.0
BolC4t28526H Brassica oleracea HOM05D001997 ORTHO05D004620 0.0e+00 1142.9 618 99.5
C04p70220 Brassica napus HOM05D001997 ORTHO05D004620 0.0e+00 1127.9 618 98.7
A04p32530 Brassica napus HOM05D001997 ORTHO05D004620 0.0e+00 1095.5 619 95.8
BraA04t18717Z Brassica rapa HOM05D001997 ORTHO05D004620 0.0e+00 1090.1 620 95.6
Sp4g25380 Schrenkiella parvula HOM05D001997 ORTHO05D004620 5.9e-288 993.8 635 85.4
BcaB06g29293 Brassica carinata HOM05D001997 ORTHO05D004620 3.6e-277 958.0 575 91.5
Thhalv10001801m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 9.1e-265 916.8 636 79.1
AT2G43250 Arabidopsis thaliana HOM05D001997 ORTHO05D004620 6.8e-260 900.6 633 77.9
CARHR138340 Cardamine hirsuta HOM05D001997 ORTHO05D004620 4.4e-259 897.9 626 78.8
AL4G41910 Arabidopsis lyrata HOM05D001997 ORTHO05D004620 1.0e-252 876.7 633 76.6
THA.LOC104802304 Tarenaya hassleriana HOM05D001997 ORTHO05D004620 7.3e-230 800.8 635 70.7
Carub.0004s2573 Capsella rubella HOM05D001997 ORTHO05D004620 3.4e-227 792.0 619 72.4
Thhalv10001772m.g Eutrema salsugineum HOM05D001997 ORTHO05D004620 8.4e-186 654.4 632 64.1
Duzib093G0427 Durio zibethinus HOM05D001997 ORTHO05D004620 1.8e-183 646.7 629 58.2
QL10p047463 Quercus lobata HOM05D001997 ORTHO05D004620 6.7e-183 644.8 638 58.9
Rhsim09G0030400 Rhododendron simsii HOM05D001997 ORTHO05D004620 3.3e-182 642.5 630 58.3
Dinv22695 Davidia involucrata HOM05D001997 ORTHO05D004620 5.7e-182 641.7 615 59.0
Hma1.2p1_0597F.1_g186510 Hydrangea macrophylla HOM05D001997 ORTHO05D004620 1.3e-181 640.6 626 58.1
Potri.017G035700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.2e-179 634.0 636 55.0
Cfa015772 Carpinus fangiana HOM05D001997 ORTHO05D004620 1.5e-179 633.6 636 57.1
TWI36G0125 Tripterygium wilfordii HOM05D001997 ORTHO05D004620 3.4e-179 632.5 620 57.9
Gorai.004G087500 Gossypium raimondii HOM05D001997 ORTHO05D004620 1.7e-178 630.2 634 57.1
Gohir.D08G083300 Gossypium hirsutum HOM05D001997 ORTHO05D004620 2.9e-178 629.4 634 56.9
Atru.chr3.1570 Acer truncatum HOM05D001997 ORTHO05D004620 6.5e-178 628.2 624 57.2
Atru.chr3.1589 Acer truncatum HOM05D001997 ORTHO05D004620 6.5e-178 628.2 624 57.2
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 8.5e-178 627.9 626 57.5
Gorai.006G186500 Gossypium raimondii HOM05D001997 ORTHO05D004620 9.4e-177 624.4 630 56.3
Ciclev10019328m.g Citrus clementina HOM05D001997 ORTHO05D004620 1.2e-176 624.0 618 58.3
Manes.04G048600 Manihot esculenta HOM05D001997 ORTHO05D004620 1.6e-176 623.6 638 55.0
Gohir.A08G074100 Gossypium hirsutum HOM05D001997 ORTHO05D004620 4.6e-176 622.1 628 56.4
Potri.007G124700 Populus trichocarpa HOM05D001997 ORTHO05D004620 1.8e-175 620.2 632 54.1
Sabra17G0022600 Salix brachista HOM05D001997 ORTHO05D004620 2.3e-175 619.8 636 53.9
Prupe.2G167200 Prunus persica HOM05D001997 ORTHO05D004620 2.2e-173 613.2 631 55.6
CANSAT21G1219 Cannabis sativa HOM05D001997 ORTHO05D004620 2.4e-172 609.8 627 55.2
Peaxi162Scf00375g00082 Petunia axillaris HOM05D001997 ORTHO05D004620 6.9e-172 608.2 628 55.4
Lj6C60T7 Lonicera japonica HOM05D001997 ORTHO05D004620 2.0e-171 606.7 625 55.5
Nitab4.5_0010690g0010 Nicotiana tabacum HOM05D001997 ORTHO05D004620 2.0e-171 606.7 634 55.0
MD07G1139400 Malus domestica HOM05D001997 ORTHO05D004620 4.5e-171 605.5 640 55.3
TAR636G0474 Trochodendron aralioides HOM05D001997 ORTHO05D004620 5.9e-171 605.1 629 56.3
RcHm_v2.0_Chr1g0354651 Rosa chinensis HOM05D001997 ORTHO05D004620 2.2e-170 603.2 639 54.1
TAR622G0498 Trochodendron aralioides HOM05D001997 ORTHO05D004620 2.2e-170 603.2 629 56.6
FAN10G2611 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-169 599.7 639 54.0
FAN10G3464 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.5e-169 599.7 639 54.0
FAN10G4317 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.2e-168 597.4 639 54.0
FvH4_7g14000 Fragaria vesca HOM05D001997 ORTHO05D004620 1.6e-168 597.0 639 53.7
FAN01G1889 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.6e-168 597.0 639 53.4
FAN03G0113 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-168 596.7 649 53.2
FAN06G3325 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.1e-168 596.7 639 53.5
MSTRG.17660 Avicennia marina HOM05D001997 ORTHO05D004620 6.1e-168 595.1 643 53.7
CiPaw.02G056300 Carya illinoinensis HOM05D001997 ORTHO05D004620 1.4e-167 594.0 617 56.4
Actinidia35961 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.1e-167 592.0 622 53.9
CSS0007184 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D004620 8.8e-167 591.3 587 57.9
MSTRG.12412 Avicennia marina HOM05D001997 ORTHO05D004620 4.4e-166 589.0 644 54.5
AUR62035000 Chenopodium quinoa HOM05D001997 ORTHO05D004620 4.4e-166 589.0 627 54.4
FAN06G4213 Fragaria x ananassa HOM05D001997 ORTHO05D004620 4.8e-165 585.5 639 52.7
PGSC0003DMG400026903 Solanum tuberosum HOM05D001997 ORTHO05D004620 1.4e-164 583.9 642 53.0
Lsat_1_v5_gn_6_55020 Lactuca sativa HOM05D001997 ORTHO05D004620 7.0e-164 581.6 619 53.5
Sc19g0002180 Simmondsia chinensis HOM05D001997 ORTHO05D004620 7.0e-164 581.6 624 52.9
Sopen06g029850 Solanum pennellii HOM05D001997 ORTHO05D004620 2.6e-163 579.7 642 52.8
HanXRQChr02g0057961 Helianthus annuus HOM05D001997 ORTHO05D004620 4.5e-163 578.9 625 53.0
PGR044G1365 Punica granatum HOM05D001997 ORTHO05D004620 4.5e-163 578.9 626 55.6
Ah.05g167000 Amaranthus hybridus HOM05D001997 ORTHO05D004620 1.3e-162 577.4 621 53.8
ECA233G5997 Erigeron canadensis HOM05D001997 ORTHO05D004620 1.9e-161 573.5 625 52.6
Oeu015677.2 Olea europaea HOM05D001997 ORTHO05D004620 2.1e-160 570.1 647 53.3
Thecc.05G002900 Theobroma cacao HOM05D001997 ORTHO05D004620 3.6e-160 569.3 638 53.1
SGA_v2.0_scaffold16G07570 Striga asiatica HOM05D001997 ORTHO05D004620 2.0e-158 563.5 641 53.4
C08p23950 Brassica napus HOM05D001997 ORTHO05D004620 2.6e-158 563.1 620 56.6
Cc01_g08750 Coffea canephora HOM05D001997 ORTHO05D004620 6.3e-157 558.5 648 51.4
HanXRQChr07g0186151 Helianthus annuus HOM05D001997 ORTHO05D004620 3.1e-156 556.2 614 51.6
MBI11_g35030_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D004620 9.1e-156 554.7 629 51.5
Dinv05995 Davidia involucrata HOM05D001997 ORTHO05D004620 2.5e-153 546.6 614 52.3
Glyma.11G094600 Glycine max HOM05D001997 ORTHO05D004620 2.1e-152 543.5 625 50.6
Phvul.011G023500 Phaseolus vulgaris HOM05D001997 ORTHO05D004620 3.6e-152 542.7 620 51.0
VMungo1127G1251 Vigna mungo HOM05D001997 ORTHO05D004620 3.6e-152 542.7 619 51.1
Lj3g0010188 Lotus japonicus HOM05D001997 ORTHO05D004620 1.0e-151 541.2 643 50.1
AUR62037461 Chenopodium quinoa HOM05D001997 ORTHO05D004620 3.0e-151 539.7 626 52.2
Migut.N02417 Erythranthe guttata HOM05D001997 ORTHO05D004620 2.6e-150 536.6 633 51.0
BraA05t19355Z Brassica rapa HOM05D001997 ORTHO05D004620 3.7e-149 532.7 613 54.8
A05p03690 Brassica napus HOM05D001997 ORTHO05D004620 7.0e-148 528.5 613 54.6
BolC4t22066H Brassica oleracea HOM05D001997 ORTHO05D004620 7.0e-148 528.5 614 55.2
C04p04300 Brassica napus HOM05D001997 ORTHO05D004620 1.2e-147 527.7 614 55.0
Ca_26058_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 1.2e-147 527.7 640 48.6
Psat7g172720 Pisum sativum HOM05D001997 ORTHO05D004620 1.2e-147 527.7 640 49.4
Aqoxy7G03960 Aquilegia oxysepala HOM05D001997 ORTHO05D004620 5.9e-147 525.4 634 48.1
Ca_30128_v3 Cicer arietinum L. HOM05D001997 ORTHO05D004620 5.9e-147 525.4 637 48.7
arahy.Tifrunner.gnm1.ann1.JTZ133 Arachis hypogaea HOM05D001997 ORTHO05D004620 8.5e-146 521.5 634 48.7
Glyma.03G127700 Glycine max HOM05D001997 ORTHO05D004620 3.2e-145 519.6 642 48.8
arahy.Tifrunner.gnm1.ann1.7X5TTD Arachis hypogaea HOM05D001997 ORTHO05D004620 4.7e-144 515.8 628 49.7
Nitab4.5_0002368g0100 Nicotiana tabacum HOM05D001997 ORTHO05D004620 3.0e-143 513.1 552 53.6
BcaC07g39373 Brassica carinata HOM05D001997 ORTHO05D004620 1.3e-141 507.7 610 53.6
TPR.G13756 Trifolium pratense HOM05D001997 ORTHO05D004620 4.8e-141 505.8 645 48.1
PSO675G0019 Papaver somniferum HOM05D001997 ORTHO05D004620 1.3e-138 497.7 631 47.5
A06p18770 Brassica napus HOM05D001997 ORTHO05D004620 1.7e-138 497.3 619 51.9
HPP92_007608 Vanilla planifolia HOM05D001997 ORTHO05D004620 2.3e-138 496.9 625 47.0
Oeu048804.2 Olea europaea HOM05D001997 ORTHO05D004620 3.8e-138 496.1 614 48.4
CDE08G0116 Ceratophyllum demersum HOM05D001997 ORTHO05D004620 1.2e-136 491.1 626 47.0
BolC8t50019H Brassica oleracea HOM05D001997 ORTHO05D004620 2.1e-136 490.3 618 51.6
unitig_22.g6172 Utricularia gibba HOM05D001997 ORTHO05D004620 1.0e-135 488.0 629 47.5
Lj4g0020139 Lotus japonicus HOM05D001997 ORTHO05D004620 2.3e-135 486.9 604 48.8
PSO017G4366 Papaver somniferum HOM05D001997 ORTHO05D004620 5.2e-135 485.7 629 46.7
Medtr4g076620 Medicago truncatula HOM05D001997 ORTHO05D004620 3.4e-134 483.0 636 46.1
DCAR_010832 Daucus carota HOM05D001997 ORTHO05D004620 2.9e-130 469.9 582 49.7
Sabra17G0022300 Salix brachista HOM05D001997 ORTHO05D004620 8.0e-128 461.8 568 48.2
ATR0743G280 Amborella trichopoda HOM05D001997 ORTHO05D004620 1.8e-127 460.7 647 44.8
Medtr4g076640 Medicago truncatula HOM05D001997 ORTHO05D004620 1.8e-127 460.7 607 45.6
TPR.G13749 Trifolium pratense HOM05D001997 ORTHO05D004620 4.0e-127 459.5 642 45.2
Gohir.A09G169000 Gossypium hirsutum HOM05D001997 ORTHO05D004620 1.7e-122 444.1 466 56.2
Gohir.D09G164700 Gossypium hirsutum HOM05D001997 ORTHO05D004620 3.0e-122 443.4 466 56.0
Zm00001eb425530 Zea mays HOM05D001997 ORTHO05D004620 8.0e-120 435.3 664 41.0
Glyma.12G021000 Glycine max HOM05D001997 ORTHO05D004620 1.8e-119 434.1 614 44.8
SEGI_28245 Sequoiadendron giganteum HOM05D001997 ORTHO05D004620 2.6e-118 430.3 658 41.5
Solyc06g073490.2 Solanum lycopersicum HOM05D001997 ORTHO05D004620 1.2e-115 421.4 418 57.2
Os04g0490700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D004620 7.3e-113 412.1 660 40.6
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 1.6e-112 411.0 605 42.6
Eucgr.A00056 Eucalyptus grandis HOM05D001997 ORTHO05D004620 2.1e-112 410.6 429 56.9
Cfa015264 Carpinus fangiana HOM05D001997 ORTHO05D004620 6.2e-112 409.1 605 42.0
BcaNung06617 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-110 404.4 591 48.7
Nn5g27952 Nelumbo nucifera HOM05D001997 ORTHO05D004620 7.8e-107 392.1 504 47.2
Cpa.g.sc81.168 Carica papaya HOM05D001997 ORTHO05D004620 2.1e-99 367.5 633 40.4
Lalb_Chr01g0001101 Lupinus albus HOM05D001997 ORTHO05D004620 2.1e-99 367.5 406 52.7
SalBow3G0527 Salvia bowleyana HOM05D001997 ORTHO05D004620 3.2e-92 343.6 342 58.5
BraA06t24958Z Brassica rapa HOM05D001997 ORTHO05D004620 4.5e-86 323.2 526 44.7
Glyma.19G130251 Glycine max HOM05D001997 ORTHO05D004620 5.8e-86 322.8 336 54.8
MD01G1056400 Malus domestica HOM05D001997 ORTHO05D004620 2.4e-84 317.4 391 47.8
Mapoly0021s0032 Marchantia polymorpha HOM05D001997 ORTHO05D004620 2.2e-77 294.3 636 32.5
GSVIVG01013581001 Vitis vinifera HOM05D001997 ORTHO05D004620 6.7e-74 282.7 379 44.3
RcHm_v2.0_Chr1g0373181 Rosa chinensis HOM05D001997 ORTHO05D004620 1.3e-72 278.5 591 35.5
BcaB06g29296 Brassica carinata HOM05D001997 ORTHO05D004620 2.8e-72 277.3 198 83.3
FvH4_7g26521 Fragaria vesca HOM05D001997 ORTHO05D004620 4.2e-68 263.5 594 34.7
FAN03G0465 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.1e-63 248.8 591 34.0
FAN06G2538 Fragaria x ananassa HOM05D001997 ORTHO05D004620 1.3e-61 241.9 591 33.3
BcaB06g29294 Brassica carinata HOM05D001997 ORTHO05D004620 1.5e-57 228.4 159 83.0
FAN10G3679 Fragaria x ananassa HOM05D001997 ORTHO05D004620 2.0e-57 228.0 397 37.5
FAN01G2316 Fragaria x ananassa HOM05D001997 ORTHO05D004620 9.7e-49 199.1 393 35.1
Pp3c13_12610 Physcomitrium patens HOM05D001997 ORTHO05D004620 1.2e-46 192.2 663 28.1
BcaC07g39374 Brassica carinata HOM05D001997 ORTHO05D004620 1.7e-45 188.3 150 66.7
BolC4t28530H Brassica oleracea HOM05D001997 ORTHO05D004620 5.0e-45 186.8 137 76.6
Actinidia28986 Actinidia chinensis HOM05D001997 ORTHO05D004620 1.9e-44 184.9 241 48.5
C04p70240 Brassica napus HOM05D001997 ORTHO05D004620 5.5e-44 183.3 106 94.3
A04p32560 Brassica napus HOM05D001997 ORTHO05D004620 1.5e-41 175.3 228 53.5
BraA04t18720Z Brassica rapa HOM05D001997 ORTHO05D004620 1.5e-41 175.3 228 53.5
C04p70260 Brassica napus HOM05D001997 ORTHO05D004620 5.7e-41 173.3 228 53.1
TPR.G11744 Trifolium pratense HOM05D001997 ORTHO05D004620 1.7e-40 171.8 310 40.3
BcaB01g03399 Brassica carinata HOM05D001997 ORTHO05D004620 2.6e-38 164.5 367 37.1
BcaC02g07196 Brassica carinata HOM05D001997 ORTHO05D004620 3.5e-38 164.1 90 97.8
GSVIVG01013582001 Vitis vinifera HOM05D001997 ORTHO05D004620 1.0e-37 162.5 171 54.4
BcaB06g29295 Brassica carinata HOM05D001997 ORTHO05D004620 1.1e-36 159.1 90 96.7
BolC4t28528H Brassica oleracea HOM05D001997 ORTHO05D004620 1.0e-34 152.5 109 82.6
Lsat_1_v5_gn_5_125441 Lactuca sativa HOM05D001997 ORTHO05D004620 3.1e-31 141.0 124 63.7
CAN.G46.28 Capsicum annuum HOM05D001997 ORTHO05D004620 9.1e-31 139.4 114 63.2
CAN.G138.1 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-30 139.0 113 63.7
SHI06486 Sapria himalayana HOM05D002588 ORTHO05D002979 5.9e-30 136.7 114 66.7
AagrBONN_evm.TU.Sc2ySwM_228.3298 Anthoceros agrestis HOM05D001997 ORTHO05D004620 1.6e-22 112.1 167 40.1
CAN.G1014.21 Capsicum annuum HOM05D001997 ORTHO05D004620 1.1e-20 105.9 93 59.1
SMO356G0473 Selaginella moellendorffii HOM05D001997 ORTHO05D004620 1.9e-20 105.1 478 24.7
BcaNung06616 Brassica carinata HOM05D001997 ORTHO05D004620 9.5e-20 102.8 98 58.2
CAN.G765.4 Capsicum annuum HOM05D001997 ORTHO05D004620 1.2e-19 102.4 93 58.1
MD01G1056500 Malus domestica HOM05D001997 ORTHO05D004620 1.0e-18 99.4 90 58.9
Actinidia11446 Actinidia chinensis HOM05D001997 ORTHO05D004620 5.2e-18 97.1 176 40.3
Dinv44213 Davidia involucrata HOM05D001997 ORTHO05D004620 1.2e-17 95.9 71 66.2
SalBow3G4229 Salvia bowleyana HOM05D001997 ORTHO05D004620 4.4e-17 94.0 119 50.4
C03p28740 Brassica napus HOM05D001997 ORTHO05D004620 1.7e-16 92.0 61 78.7
SalBow3G4162 Salvia bowleyana HOM05D001997 ORTHO05D004620 8.3e-16 89.7 90 50.0
BcaC05g28816 Brassica carinata HOM05D001997 ORTHO05D004620 3.2e-15 87.8 82 63.4
SGA_v2.0_scaffold4G02500 Striga asiatica HOM05D001997 ORTHO05D004620 1.9e-12 78.6 70 54.3
Medtr4g076610 Medicago truncatula HOM05D001997 ORTHO05D004620 2.5e-12 78.2 85 48.2
BcaB01g03396 Brassica carinata HOM05D001623 ORTHO05D001473 1.6e-11 75.5 56 71.4
BcaC01g05247 Brassica carinata HOM05D001997 ORTHO05D004620 1.6e-11 75.5 71 59.2
BcaC01g05246 Brassica carinata HOM05D001997 ORTHO05D004620 4.0e-10 70.9 86 50.0
BolC5t33660H Brassica oleracea HOM05D001997 ORTHO05D004620 3.4e-09 67.8 396 29.3
TPR.G290 Trifolium pratense HOM05D001997 ORTHO05D004620 5.8e-09 67.0 51 66.7
FAN10G4060 Fragaria x ananassa HOM05D001997 ORTHO05D004620 6.0e-06 57.0 79 38.0


User provided reference genes

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