Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29309 Brassica carinata HOM05D005941 ORTHO05D023652 1.4e-33 145.6 68 100.0
BcaB06g29310 Brassica carinata HOM05D005941 ORTHO05D023652 1.4e-33 145.6 68 100.0
BcaC02g07183 Brassica carinata HOM05D005941 ORTHO05D023652 1.4e-33 145.6 68 100.0
BcaC02g07184 Brassica carinata HOM05D005941 ORTHO05D023652 1.4e-33 145.6 68 100.0
BolC4t28542H Brassica oleracea HOM05D005941 ORTHO05D007879 1.8e-33 145.2 67 100.0
CARHR138330 Cardamine hirsuta HOM05D005941 ORTHO05D007879 7.7e-16 86.7 75 58.7
A03p50720 Brassica napus HOM05D005941 ORTHO05D007879 1.1e-14 82.8 69 62.3
BraA03t14163Z Brassica rapa HOM05D005941 ORTHO05D007879 1.1e-14 82.8 69 62.3
C04p04390 Brassica napus HOM05D005941 ORTHO05D007879 1.5e-14 82.4 73 58.9
BolC4t22072H Brassica oleracea HOM05D005941 ORTHO05D007879 1.5e-14 82.4 73 58.9
Thhalv10001524m.g Eutrema salsugineum HOM05D005941 ORTHO05D007879 2.5e-14 81.6 74 58.1
C04p04430 Brassica napus HOM05D005941 ORTHO05D007879 3.2e-14 81.3 74 62.2
BolC4t22076H Brassica oleracea HOM05D005941 ORTHO05D007879 3.2e-14 81.3 74 62.2
AT2G43260 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 4.2e-14 80.9 75 56.0
BcaC06g33593 Brassica carinata HOM05D005941 ORTHO05D007879 1.6e-13 79.0 68 61.8
BolC7t45422H Brassica oleracea HOM05D005941 ORTHO05D007879 1.6e-13 79.0 68 61.8
AL4G37620 Arabidopsis lyrata HOM05D005941 ORTHO05D007879 2.1e-13 78.6 74 51.4
BolC5t29472H Brassica oleracea HOM05D005941 ORTHO05D007879 2.7e-13 78.2 77 57.1
AL4G41930 Arabidopsis lyrata HOM05D005941 ORTHO05D007879 3.6e-13 77.8 75 54.7
AL4G34310 Arabidopsis lyrata HOM05D005941 ORTHO05D007879 4.7e-13 77.4 78 53.8
C05p07170 Brassica napus HOM05D005941 ORTHO05D007879 4.7e-13 77.4 77 55.8
BcaNung06467 Brassica carinata HOM05D005941 ORTHO05D007879 8.0e-13 76.6 75 53.3
BcaC02g12406 Brassica carinata HOM05D005941 ORTHO05D007879 1.0e-12 76.3 74 60.8
Carub.0004s2574 Capsella rubella HOM05D005941 ORTHO05D007879 1.0e-12 76.3 75 56.0
BcaNung04033 Brassica carinata HOM05D005941 ORTHO05D007879 1.8e-12 75.5 67 59.7
C04p04330 Brassica napus HOM05D005941 ORTHO05D007879 4.0e-12 74.3 68 57.4
BolC4t22069H Brassica oleracea HOM05D005941 ORTHO05D007879 4.0e-12 74.3 68 57.4
AT4G17780 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 6.8e-12 73.6 74 54.1
A05p03700 Brassica napus HOM05D005941 ORTHO05D007879 8.8e-12 73.2 68 54.4
Thhalv10027244m.g Eutrema salsugineum HOM05D005941 ORTHO05D007879 2.0e-11 72.0 72 56.9
AL4G36610 Arabidopsis lyrata HOM05D005941 ORTHO05D007879 2.6e-11 71.6 74 50.0
Carub.0007s2358 Capsella rubella HOM05D005941 ORTHO05D007879 2.6e-11 71.6 74 52.7
AT2G43445 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 9.8e-11 69.7 69 56.5
BcaB06g29313 Brassica carinata HOM05D005941 ORTHO05D007879 1.3e-10 69.3 71 49.3
C07p19310 Brassica napus HOM05D005941 ORTHO05D007879 3.7e-10 67.8 80 46.2
BraA03t10074Z Brassica rapa HOM05D005941 ORTHO05D007879 3.7e-10 67.8 75 48.0
BraA05t19357Z Brassica rapa HOM05D005941 ORTHO05D007879 3.7e-10 67.8 68 52.9
A03p07450 Brassica napus HOM05D005941 ORTHO05D007879 4.8e-10 67.4 75 48.0
CARHR130490 Cardamine hirsuta HOM05D005941 ORTHO05D007879 4.8e-10 67.4 74 47.3
A04p32700 Brassica napus HOM05D012296 ORTHO05D014409 8.3e-10 66.6 70 48.6
BolC7t42414H Brassica oleracea HOM05D005941 ORTHO05D007879 1.1e-09 66.2 80 43.8
BcaC06g35151 Brassica carinata HOM05D005941 ORTHO05D007879 1.4e-09 65.9 80 45.0
A06p37200 Brassica napus HOM05D005941 ORTHO05D007879 1.4e-09 65.9 72 43.1
A07p12860 Brassica napus HOM05D005941 ORTHO05D007879 1.4e-09 65.9 80 45.0
BolC7t42445H Brassica oleracea HOM05D005941 ORTHO05D007879 1.4e-09 65.9 80 45.0
BraA06t26643Z Brassica rapa HOM05D005941 ORTHO05D007879 1.4e-09 65.9 72 43.1
BcaC06g35147 Brassica carinata HOM05D005941 ORTHO05D007879 1.8e-09 65.5 80 45.0
BolC7t42451H Brassica oleracea HOM05D005941 ORTHO05D007879 1.8e-09 65.5 80 45.0
CARHR134120 Cardamine hirsuta HOM05D005941 ORTHO05D007879 1.8e-09 65.5 75 44.0
BcaB02g10128 Brassica carinata HOM05D005941 ORTHO05D007879 2.4e-09 65.1 76 47.4
BcaB03g14061 Brassica carinata HOM05D005941 ORTHO05D007879 2.4e-09 65.1 80 45.0
CARHR134100 Cardamine hirsuta HOM05D005941 ORTHO05D007879 2.4e-09 65.1 75 44.0
AT2G43440 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 3.1e-09 64.7 44 70.5
BcaB03g14064 Brassica carinata HOM05D005941 ORTHO05D007879 3.1e-09 64.7 80 43.8
C03p08630 Brassica napus HOM05D005941 ORTHO05D007879 4.1e-09 64.3 75 45.3
BolC3t13365H Brassica oleracea HOM05D005941 ORTHO05D007879 4.1e-09 64.3 75 45.3
BraA07t29061Z Brassica rapa HOM05D005941 ORTHO05D007879 7.0e-09 63.5 80 43.8
C04p62360 Brassica napus HOM05D005941 ORTHO05D007879 1.2e-08 62.8 77 45.5
AL4G41950 Arabidopsis lyrata HOM05D005941 ORTHO05D007879 1.6e-08 62.4 72 50.0
AT2G30615 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 2.7e-08 61.6 75 42.7
BcaNung06618 Brassica carinata HOM05D005941 ORTHO05D007879 3.5e-08 61.2 74 47.3
BcaB03g14065 Brassica carinata HOM05D005941 ORTHO05D007879 4.5e-08 60.8 80 42.5
BcaB06g28637 Brassica carinata HOM05D005941 ORTHO05D007879 4.5e-08 60.8 77 44.2
BolC4t27710H Brassica oleracea HOM05D005941 ORTHO05D007879 4.5e-08 60.8 77 44.2
Carub.0005s2945 Capsella rubella HOM05D005941 ORTHO05D007879 1.3e-07 59.3 74 41.9
CARHR134960 Cardamine hirsuta HOM05D005941 ORTHO05D007879 1.7e-07 58.9 73 42.5
AL4G37630 Arabidopsis lyrata HOM05D005941 ORTHO05D023652 2.3e-07 58.5 64 50.0
C03p08500 Brassica napus HOM05D005941 ORTHO05D007879 2.9e-07 58.2 75 44.0
BolC3t13355H Brassica oleracea HOM05D005941 ORTHO05D007879 2.9e-07 58.2 75 44.0
CARHR130510 Cardamine hirsuta HOM05D005941 ORTHO05D007879 6.6e-07 57.0 76 40.8
BolC4t26593H Brassica oleracea HOM05D005941 ORTHO05D007879 1.1e-06 56.2 69 43.5
BcaC01g05404 Brassica carinata HOM05D005941 ORTHO05D007879 1.5e-06 55.8 80 37.5
C03p26940 Brassica napus HOM05D005941 ORTHO05D007879 1.5e-06 55.8 80 37.5
BolC3t15077H Brassica oleracea HOM05D005941 ORTHO05D007879 1.5e-06 55.8 75 41.3
AT2G42955 Arabidopsis thaliana HOM05D005941 ORTHO05D007879 9.5e-06 53.1 50 54.0


User provided reference genes

Program Settings