Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07166 Brassica carinata HOM05D007394 ORTHO05D015383 7.0e-49 196.8 90 100.0
BolC4t28555H Brassica oleracea HOM05D007394 ORTHO05D015383 7.0e-49 196.8 90 100.0
A04p32830 Brassica napus HOM05D007394 ORTHO05D015383 9.2e-49 196.4 90 98.9
BraA04t18745Z Brassica rapa HOM05D007394 ORTHO05D015383 9.2e-49 196.4 90 98.9
C04p70540 Brassica napus HOM05D007394 ORTHO05D015383 3.5e-48 194.5 90 98.9
BcaB06g29326 Brassica carinata HOM05D007394 ORTHO05D015383 4.5e-48 194.1 90 97.8
Thhalv10001696m.g Eutrema salsugineum HOM05D007394 ORTHO05D015383 2.9e-42 174.9 91 87.9
Sp4g25660 Schrenkiella parvula HOM05D007394 ORTHO05D015383 4.9e-42 174.1 90 87.8
Carub.0004s2603 Capsella rubella HOM05D007394 ORTHO05D015383 4.3e-38 161.0 90 83.3
AL4G42350 Arabidopsis lyrata HOM05D007394 ORTHO05D015383 1.4e-36 156.0 90 81.1
CARHR138680 Cardamine hirsuta HOM05D007394 ORTHO05D015383 2.0e-35 152.1 90 80.0
AT2G43550 Arabidopsis thaliana HOM05D007394 ORTHO05D015383 3.4e-35 151.4 91 80.2
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 1.9e-33 145.6 74 86.5
Thhalv10001701m.g Eutrema salsugineum HOM05D007394 ORTHO05D032247 6.6e-31 137.1 90 76.7
BcaB06g29325 Brassica carinata HOM05D007394 ORTHO05D032247 4.6e-24 114.4 88 67.0
BcaC02g07167 Brassica carinata HOM05D007394 ORTHO05D032247 5.1e-23 110.9 88 64.8
Thhalv10001746m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 7.1e-17 90.5 88 53.4
AL2G24960 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 9.2e-17 90.1 87 55.2
BcaC02g12386 Brassica carinata HOM05D007394 ORTHO05D009996 9.2e-17 90.1 88 51.1
C04p04520 Brassica napus HOM05D007394 ORTHO05D009996 9.2e-17 90.1 88 51.1
Sp4g25600 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.2e-16 89.7 88 50.0
THA.LOC104803941 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.2e-16 89.7 89 50.6
A03p24290 Brassica napus HOM05D007394 ORTHO05D009996 2.1e-16 89.0 88 48.9
BraA03t11637Z Brassica rapa HOM05D007394 ORTHO05D009996 2.1e-16 89.0 88 48.9
BraA03t11639Z Brassica rapa HOM05D007394 ORTHO05D009996 2.1e-16 89.0 88 48.9
A05p03820 Brassica napus HOM05D007394 ORTHO05D009996 2.7e-16 88.6 88 51.1
A05p03830 Brassica napus HOM05D007394 ORTHO05D009996 3.5e-16 88.2 87 48.3
BcaB02g08934 Brassica carinata HOM05D007394 ORTHO05D009996 7.8e-16 87.0 88 50.0
AT1G47540 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.0e-15 86.7 89 48.3
THA.LOC104798701 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.0e-15 86.7 88 50.0
THA.LOC109116252 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 1.0e-15 86.7 88 51.1
BraA03t11638Z Brassica rapa HOM05D007394 ORTHO05D009996 1.3e-15 86.3 87 47.1
CARHR138610 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.3e-15 85.5 88 50.0
CARHR138620 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.3e-15 85.5 90 52.2
Sp3g24200 Schrenkiella parvula HOM05D007394 ORTHO05D009996 2.3e-15 85.5 88 51.1
THA.LOC104803932 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 2.3e-15 85.5 89 49.4
AT2G43510 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.0e-15 85.1 85 52.9
Carub.0004s2597 Capsella rubella HOM05D007394 ORTHO05D009996 3.0e-15 85.1 88 52.3
A03p24300 Brassica napus HOM05D007394 ORTHO05D009996 3.9e-15 84.7 87 46.0
BraA03t11640Z Brassica rapa HOM05D007394 ORTHO05D009996 3.9e-15 84.7 87 46.0
AL1G53780 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 5.1e-15 84.3 89 48.3
A04p32790 Brassica napus HOM05D007394 ORTHO05D009996 5.1e-15 84.3 88 47.7
BraA05t19373Z Brassica rapa HOM05D007394 ORTHO05D009996 5.1e-15 84.3 88 44.3
Carub.0004s2598 Capsella rubella HOM05D007394 ORTHO05D009996 5.1e-15 84.3 88 50.0
BcaB02g08929 Brassica carinata HOM05D007394 ORTHO05D009996 8.7e-15 83.6 88 50.0
C04p04590 Brassica napus HOM05D007394 ORTHO05D009996 8.7e-15 83.6 87 44.8
AL4G42300 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.5e-14 82.8 85 52.9
A04p32800 Brassica napus HOM05D007394 ORTHO05D009996 1.9e-14 82.4 87 44.8
BraA04t18742Z Brassica rapa HOM05D007394 ORTHO05D009996 1.9e-14 82.4 87 44.8
Sp4g25610 Schrenkiella parvula HOM05D007394 ORTHO05D009996 1.9e-14 82.4 87 48.3
BcaC02g12384 Brassica carinata HOM05D007394 ORTHO05D009996 2.5e-14 82.0 88 46.6
C04p04540 Brassica napus HOM05D007394 ORTHO05D009996 2.5e-14 82.0 88 46.6
BolC4t22087H Brassica oleracea HOM05D007394 ORTHO05D009996 2.5e-14 82.0 88 46.6
BolC4t22090H Brassica oleracea HOM05D007394 ORTHO05D009996 2.5e-14 82.0 87 43.7
BcaC02g12381 Brassica carinata HOM05D007394 ORTHO05D009996 4.3e-14 81.3 88 46.6
CARHR138630 Cardamine hirsuta HOM05D007394 ORTHO05D009996 4.3e-14 81.3 88 46.6
BcaB06g29320 Brassica carinata HOM05D007394 ORTHO05D009996 7.3e-14 80.5 88 48.9
Thhalv10001697m.g Eutrema salsugineum HOM05D007394 ORTHO05D009996 9.6e-14 80.1 87 47.1
BcaC02g12382 Brassica carinata HOM05D007394 ORTHO05D009996 1.6e-13 79.3 88 47.7
A04p32810 Brassica napus HOM05D007394 ORTHO05D009996 1.6e-13 79.3 88 44.3
C04p04550 Brassica napus HOM05D007394 ORTHO05D009996 1.6e-13 79.3 88 47.7
BraA04t18743Z Brassica rapa HOM05D007394 ORTHO05D009996 1.6e-13 79.3 88 44.3
BcaB02g08930 Brassica carinata HOM05D007394 ORTHO05D009996 2.1e-13 79.0 92 46.7
BraA05t19371Z Brassica rapa HOM05D007394 ORTHO05D009996 2.1e-13 79.0 88 47.7
BcaB02g08928 Brassica carinata HOM05D007394 ORTHO05D009996 2.8e-13 78.6 88 47.7
BcaC02g12378 Brassica carinata HOM05D007394 ORTHO05D009996 2.8e-13 78.6 87 46.0
AL8G26520 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 3.6e-13 78.2 83 50.6
AT2G43535 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 3.6e-13 78.2 58 55.2
A05p03840 Brassica napus HOM05D007394 ORTHO05D009996 3.6e-13 78.2 88 47.7
Sp3g24100 Schrenkiella parvula HOM05D007394 ORTHO05D009996 3.6e-13 78.2 90 45.6
Aa31LG1G25260 Aethionema arabicum HOM05D007394 ORTHO05D009996 6.2e-13 77.4 69 56.5
C04p70500 Brassica napus HOM05D007394 ORTHO05D009996 6.2e-13 77.4 88 45.5
AT2G43520 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.1e-12 76.6 89 47.2
AL4G42310 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.4e-12 76.3 88 46.6
AL4G42320 Arabidopsis lyrata HOM05D007394 ORTHO05D009996 1.4e-12 76.3 94 44.7
CARHR138640 Cardamine hirsuta HOM05D007394 ORTHO05D009996 1.4e-12 76.3 86 40.7
BcaB01g03378 Brassica carinata HOM05D007394 ORTHO05D009996 2.4e-12 75.5 82 45.1
C04p70530 Brassica napus HOM05D007394 ORTHO05D009996 3.1e-12 75.1 88 43.2
Carub.0004s2602 Capsella rubella HOM05D007394 ORTHO05D009996 3.1e-12 75.1 88 42.0
BcaB02g10434 Brassica carinata HOM05D007394 ORTHO05D009996 4.0e-12 74.7 88 45.5
BolC4t28552H Brassica oleracea HOM05D007394 ORTHO05D009996 6.9e-12 73.9 88 43.2
Aa31LG1G24860 Aethionema arabicum HOM05D007394 ORTHO05D009996 1.2e-11 73.2 67 50.7
BcaC01g05230 Brassica carinata HOM05D007394 ORTHO05D009996 2.0e-11 72.4 82 43.9
CARHR138650 Cardamine hirsuta HOM05D007394 ORTHO05D009996 2.0e-11 72.4 87 44.8
BcaC02g07172 Brassica carinata HOM05D007394 ORTHO05D009996 2.6e-11 72.0 58 50.0
Carub.0002s0551 Capsella rubella HOM05D007394 ORTHO05D009996 2.6e-11 72.0 81 38.3
BcaB06g29322 Brassica carinata HOM05D007394 ORTHO05D009996 3.4e-11 71.6 57 50.9
THA.LOC104805814 Tarenaya hassleriana HOM05D007394 ORTHO05D009996 3.4e-11 71.6 87 42.5
BcaC02g07171 Brassica carinata HOM05D007394 ORTHO05D009996 4.4e-11 71.2 91 38.5
BcaB06g29321 Brassica carinata HOM05D007394 ORTHO05D009996 9.9e-11 70.1 57 49.1
Carub.0004s2599 Capsella rubella HOM05D007394 ORTHO05D009996 1.3e-10 69.7 81 38.3
AT2G43530 Arabidopsis thaliana HOM05D007394 ORTHO05D009996 1.4e-09 66.2 88 44.3
BolC3t15251H Brassica oleracea HOM05D007394 ORTHO05D009996 3.2e-09 65.1 70 48.6
Carub.0004s2601 Capsella rubella HOM05D007394 ORTHO05D009996 2.7e-08 62.0 68 44.1
BcaB06g29323 Brassica carinata HOM05D007394 ORTHO05D009996 1.0e-07 60.1 69 42.0
Carub.0004s2604 Capsella rubella HOM05D007394 ORTHO05D009996 1.0e-07 60.1 90 38.9
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 5.1e-07 57.8 72 44.4
Sp4g02290 Schrenkiella parvula HOM05D007394 ORTHO05D009234 5.1e-07 57.8 95 41.1


User provided reference genes

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