Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 3.3e-86 321.6 158 100.0
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 1.4e-73 279.6 143 96.5
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 1.6e-64 249.6 128 95.3
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 1.9e-49 199.5 145 68.3
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 1.3e-29 133.7 168 46.4
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 1.3e-29 133.7 168 46.4
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 6.6e-26 121.3 136 47.1
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 6.2e-24 114.8 140 46.4
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.8e-23 113.2 146 47.3
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 1.5e-22 110.2 116 50.0
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 1.3e-21 107.1 116 49.1
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 1.3e-21 107.1 116 49.1
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 2.9e-21 105.9 143 48.3
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 1.4e-20 103.6 135 48.9
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 2.4e-20 102.8 135 48.9
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 3.5e-19 99.0 137 43.1
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 6.0e-19 98.2 155 43.9
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 6.0e-19 98.2 145 42.1
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 1.3e-18 97.1 146 43.2
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.7e-18 96.7 144 44.4
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 2.3e-18 96.3 146 45.2
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 3.9e-18 95.5 137 40.9
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 3.9e-18 95.5 137 40.9
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 6.6e-18 94.7 154 44.8
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 8.6e-18 94.4 154 44.2
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.1e-17 94.0 174 37.4
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 1.5e-17 93.6 137 40.1
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 1.5e-17 93.6 136 41.2
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 4.3e-17 92.0 136 41.2
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 4.3e-17 92.0 151 43.7
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 7.3e-17 91.3 142 37.3
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.2e-16 90.5 141 41.1
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 1.6e-16 90.1 165 38.8
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 2.1e-16 89.7 136 40.4
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 2.8e-16 89.4 148 40.5
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 3.6e-16 89.0 143 44.1
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 4.0e-15 85.5 120 42.5
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 1.2e-14 84.0 137 43.1
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 2.0e-14 83.2 145 40.0
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 2.6e-14 82.8 120 40.8
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 3.4e-14 82.4 132 40.9
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 7.5e-14 81.3 137 41.6
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 4.9e-13 78.6 143 35.7
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 4.9e-13 78.6 143 35.7
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 6.4e-13 78.2 122 43.4
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 6.4e-13 78.2 167 36.5
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 6.4e-13 78.2 122 43.4
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 6.4e-13 78.2 138 34.1
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 1.4e-12 77.0 143 35.0
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 2.4e-12 76.3 122 42.6
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 4.1e-12 75.5 167 35.9
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 4.1e-12 75.5 140 35.0
A10p04470 Brassica napus HOM05D000862 ORTHO05D003588 7.1e-12 74.7 148 31.8
BraA10t42714Z Brassica rapa HOM05D000862 ORTHO05D003588 7.1e-12 74.7 148 31.8
BcaC05g24339 Brassica carinata HOM05D000862 ORTHO05D003588 9.2e-12 74.3 148 32.4
C05p04090 Brassica napus HOM05D000862 ORTHO05D003588 9.2e-12 74.3 148 31.8
BolC5t29188H Brassica oleracea HOM05D000862 ORTHO05D003588 9.2e-12 74.3 148 31.8
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 1.6e-11 73.6 138 32.6
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.6e-11 73.6 143 35.7
Thhalv10008892m.g Eutrema salsugineum HOM05D000862 ORTHO05D003588 2.7e-11 72.8 148 33.8
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 3.5e-11 72.4 160 32.5
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 4.6e-11 72.0 127 34.6
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 7.8e-11 71.2 122 41.0
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.0e-10 70.9 143 35.0
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 2.3e-10 69.7 119 42.0
Carub.0001s0511 Capsella rubella HOM05D000862 ORTHO05D003588 2.3e-10 69.7 148 32.4
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 2.3e-10 69.7 152 32.9
Sp1g04570 Schrenkiella parvula HOM05D000862 ORTHO05D003588 3.0e-10 69.3 148 30.4
AL1G15670 Arabidopsis lyrata HOM05D000862 ORTHO05D003588 3.9e-10 68.9 141 32.6
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 5.1e-10 68.6 147 30.6
AT1G05760 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 6.6e-10 68.2 141 31.9
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 6.6e-10 68.2 148 34.5
THA.LOC104800921 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 8.6e-10 67.8 156 28.8
CARHR005260 Cardamine hirsuta HOM05D000862 ORTHO05D003588 1.1e-09 67.4 141 31.9
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.5e-09 67.0 147 30.6
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 1.5e-09 67.0 140 32.1
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 2.5e-09 66.2 154 28.6
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 2.5e-09 66.2 144 31.2
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 3.3e-09 65.9 138 31.2
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.3e-09 65.9 141 33.3
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 5.6e-09 65.1 154 29.2
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.2e-08 63.9 83 48.2
CAN.G575.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.2e-08 63.9 147 32.0
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.2e-08 63.9 141 34.0
Rhsim04G0238100 Rhododendron simsii HOM05D000862 ORTHO05D003588 1.2e-08 63.9 155 31.0
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 2.8e-08 62.8 140 31.4
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 2.8e-08 62.8 150 31.3
AUR62004914 Chenopodium quinoa HOM05D000862 ORTHO05D003588 2.8e-08 62.8 140 31.4
THA.LOC104801543 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 2.8e-08 62.8 146 29.5
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 4.7e-08 62.0 155 29.0
AUR62001043 Chenopodium quinoa HOM05D000862 ORTHO05D003588 4.7e-08 62.0 140 31.4
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.1e-07 60.8 150 30.7
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 1.1e-07 60.8 143 34.3
BcaC05g24342 Brassica carinata HOM05D000862 ORTHO05D003588 1.4e-07 60.5 133 30.1
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 1.4e-07 60.5 151 30.5
Aa31LG1G8610 Aethionema arabicum HOM05D000862 ORTHO05D003588 1.8e-07 60.1 133 30.1
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 3.1e-07 59.3 141 27.0
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 8.9e-07 57.8 147 31.3
C05p04080 Brassica napus HOM05D008029 ORTHO05D003588 1.2e-06 57.4 131 29.8
PGSC0003DMG400040105 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.2e-06 57.4 149 32.2
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.0e-06 56.6 153 28.8
Rhsim04G0236000 Rhododendron simsii HOM05D000862 ORTHO05D003588 2.0e-06 56.6 156 30.1
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 2.6e-06 56.2 155 32.9
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 2.6e-06 56.2 147 27.2
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.6e-06 56.2 148 29.1
CARHR138920 Cardamine hirsuta HOM05D021446 ORTHO05D016094 3.4e-06 55.8 48 58.3
Rhsim04G0237600 Rhododendron simsii HOM05D000862 ORTHO05D003588 5.8e-06 55.1 150 32.0
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 7.6e-06 54.7 133 27.1
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 9.9e-06 54.3 86 41.9
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 9.9e-06 54.3 156 30.1


User provided reference genes

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