Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 1.6e-94 349.4 170 100.0
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 1.6e-94 349.4 170 100.0
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 8.8e-93 343.6 170 98.2
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 5.2e-77 291.2 170 84.1
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 2.0e-76 289.3 170 84.1
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 4.4e-76 288.1 170 83.5
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 2.3e-56 222.6 167 69.5
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 4.3e-55 218.4 167 68.3
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 2.6e-44 182.6 164 62.8
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.9e-42 176.4 160 61.9
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 3.3e-39 165.6 187 53.5
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 4.3e-39 165.2 187 53.5
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 1.1e-37 160.6 168 54.2
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 5.2e-37 158.3 173 52.6
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 8.9e-37 157.5 157 56.1
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.9e-35 152.5 138 59.4
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.1e-34 150.6 192 51.6
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 4.1e-34 148.7 171 50.3
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 9.2e-34 147.5 156 55.1
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 2.7e-33 146.0 164 51.2
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.0e-32 144.1 170 48.8
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 6.6e-32 141.4 174 50.0
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 7.3e-31 137.9 193 45.1
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 9.5e-31 137.5 163 50.3
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 2.1e-30 136.3 176 46.6
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 8.1e-30 134.4 193 43.5
A05p03940 Brassica napus HOM05D008029 ORTHO05D003588 1.8e-29 133.3 137 51.8
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 3.1e-29 132.5 157 48.4
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 2.9e-27 125.9 139 51.8
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 3.5e-25 119.0 175 41.7
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 7.3e-23 111.3 131 51.9
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 7.3e-23 111.3 131 51.9
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 9.6e-23 110.9 162 43.2
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 1.8e-21 106.7 159 42.8
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 8.9e-21 104.4 166 41.6
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 3.4e-20 102.4 167 37.1
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 4.4e-20 102.1 158 42.4
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 2.9e-19 99.4 154 42.9
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 2.9e-19 99.4 152 38.2
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 4.9e-19 98.6 161 34.8
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 6.4e-19 98.2 155 37.4
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 6.4e-19 98.2 155 37.4
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.1e-18 97.4 155 37.4
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 1.4e-18 97.1 155 37.4
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.9e-18 96.7 155 37.4
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 4.2e-18 95.5 121 47.1
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 4.2e-18 95.5 139 43.2
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.2e-17 94.0 200 34.5
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 2.1e-17 93.2 137 40.9
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 2.7e-17 92.8 140 36.4
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 4.6e-17 92.0 135 37.0
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 6.0e-17 91.7 134 41.0
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 6.0e-17 91.7 166 34.9
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 1.0e-16 90.9 166 38.0
CARHR099620 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.1e-15 87.4 79 59.5
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 2.5e-15 86.3 160 34.4
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.3e-14 84.0 147 36.1
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 3.6e-14 82.4 176 33.5
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 3.6e-14 82.4 176 33.5
Rhsim04G0236500 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.8e-14 82.0 153 35.9
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 1.1e-13 80.9 125 40.0
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.4e-13 80.5 154 36.4
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 1.4e-13 80.5 143 39.2
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.4e-13 80.5 144 34.7
BcaC02g12367 Brassica carinata HOM05D008029 ORTHO05D003588 3.1e-13 79.3 118 43.2
C04p04700 Brassica napus HOM05D008029 ORTHO05D003588 3.1e-13 79.3 118 43.2
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 4.0e-13 79.0 137 38.0
ECA233G3755 Erigeron canadensis HOM05D000862 ORTHO05D003588 5.3e-13 78.6 158 37.3
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 6.9e-13 78.2 147 33.3
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 6.9e-13 78.2 151 34.4
TAR636G1580 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.2e-12 77.4 135 35.6
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 1.5e-12 77.0 150 33.3
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 2.6e-12 76.3 162 30.9
AT2G43745 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 3.4e-12 75.9 91 52.7
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 7.6e-12 74.7 167 32.9
vmacro08050 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 7.6e-12 74.7 141 34.0
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 9.9e-12 74.3 136 36.0
EL10Ac3g05502 Beta vulgaris HOM05D008029 ORTHO05D003588 1.3e-11 73.9 154 33.1
CSS0029865 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.7e-11 73.6 156 32.1
CSS0034808 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.7e-11 73.6 156 32.1
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 1.7e-11 73.6 155 31.6
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.7e-11 73.6 153 31.4
AT1G05770 Arabidopsis thaliana HOM05D000862 ORTHO05D003588 2.2e-11 73.2 158 31.6
DCAR_026995 Daucus carota HOM05D000862 ORTHO05D003588 2.2e-11 73.2 158 35.4
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 3.8e-11 72.4 175 29.1
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 4.9e-11 72.0 155 31.6
TAR636G1603 Trochodendron aralioides HOM05D000862 ORTHO05D003588 4.9e-11 72.0 153 32.0
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 6.4e-11 71.6 147 37.4
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 6.4e-11 71.6 123 37.4
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 6.4e-11 71.6 123 37.4
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 6.4e-11 71.6 136 36.8
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 6.4e-11 71.6 173 29.5
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 8.4e-11 71.2 105 39.0
HanXRQChr12g0379721 Helianthus annuus HOM05D000862 ORTHO05D003588 8.4e-11 71.2 135 35.6
Aa31LG1G25460 Aethionema arabicum HOM05D000402 ORTHO05D000263 1.1e-10 70.9 100 43.0
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 1.1e-10 70.9 159 36.5
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 1.4e-10 70.5 158 29.1
CARHR099610 Cardamine hirsuta HOM05D008029 ORTHO05D003588 1.4e-10 70.5 84 48.8
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 1.4e-10 70.5 141 35.5
Sc13g0005910 Simmondsia chinensis HOM05D000862 ORTHO05D003588 1.9e-10 70.1 163 33.7
TAR636G0883 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.4e-10 69.7 136 34.6
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.2e-10 69.3 165 32.1
DCAR_003013 Daucus carota HOM05D000862 ORTHO05D003588 4.2e-10 68.9 153 33.3
BcaB01g03364 Brassica carinata HOM05D008029 ORTHO05D003588 5.4e-10 68.6 94 42.6
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 5.4e-10 68.6 151 32.5
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.4e-10 68.6 150 31.3
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 5.4e-10 68.6 167 31.7
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 1.6e-09 67.0 144 31.9
DCAR_024495 Daucus carota HOM05D000075 ORTHO05D003588 1.6e-09 67.0 145 36.6
Nitab4.5_0012347g0020 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.6e-09 67.0 156 29.5
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.0e-08 64.3 156 28.2
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 1.0e-08 64.3 149 32.2
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 1.3e-08 63.9 157 32.5
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 1.3e-08 63.9 157 32.5
THA.LOC104815871 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 1.3e-08 63.9 146 32.2
TAR636G0218 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.3e-08 63.9 176 29.5
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.8e-08 63.5 136 30.9
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 2.3e-08 63.2 143 32.2
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 3.9e-08 62.4 144 27.8
Peaxi162Scf00285g00444 Petunia axillaris HOM05D000862 ORTHO05D003588 5.1e-08 62.0 125 36.8
Thhalv10001737m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 6.7e-08 61.6 98 37.8
Nitab4.5_0000941g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 8.7e-08 61.2 188 29.8
Dinv15175 Davidia involucrata HOM05D000862 ORTHO05D003588 1.5e-07 60.5 128 34.4
Nn7g36896 Nelumbo nucifera HOM05D008029 ORTHO05D003588 1.5e-07 60.5 109 36.7
CAN.G749.17 Capsicum annuum HOM05D000002 ORTHO05D003588 1.9e-07 60.1 152 33.6
Os10g0132300 Oryza sativa ssp. japonica HOM05D000862 ORTHO05D049672 1.9e-07 60.1 128 34.4
Sabra02G0024100 Salix brachista HOM05D000862 ORTHO05D000943 4.3e-07 58.9 141 31.9
Eucgr.I00640 Eucalyptus grandis HOM05D000862 ORTHO05D000943 7.4e-07 58.2 146 30.1
THA.LOC104800920 Tarenaya hassleriana HOM05D008029 ORTHO05D003588 7.4e-07 58.2 160 28.1
vmacro08049 Vaccinium macrocarpon HOM05D000862 ORTHO05D003588 7.4e-07 58.2 210 24.8
DCAR_024494 Daucus carota HOM05D008029 ORTHO05D003588 9.6e-07 57.8 159 28.9
Lj1A1150T112 Lonicera japonica HOM05D000862 ORTHO05D000943 1.3e-06 57.4 136 27.9
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 1.3e-06 57.4 153 30.1
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.6e-06 57.0 160 29.4
AUR62004914 Chenopodium quinoa HOM05D000862 ORTHO05D003588 6.2e-06 55.1 141 29.8
Eucgr.F01690 Eucalyptus grandis HOM05D000862 ORTHO05D000943 6.2e-06 55.1 143 30.8


User provided reference genes

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