Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.5e-132 476.1 227 100.0
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 2.5e-127 458.8 227 96.5
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 3.1e-125 451.8 227 95.2
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 3.1e-125 451.8 217 99.1
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-124 449.9 227 93.4
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-124 449.9 227 93.4
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 2.4e-122 442.2 227 92.1
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 5.4e-122 441.0 217 96.8
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 2.0e-121 439.1 214 97.2
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.5e-119 433.0 227 89.9
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.5e-116 422.9 227 87.7
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 2.2e-115 419.1 214 92.1
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 7.3e-111 404.1 228 83.8
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.2e-110 403.3 228 83.3
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 8.1e-110 400.6 228 82.5
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-109 400.2 212 91.5
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-109 400.2 228 82.9
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.9e-107 392.1 228 80.3
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.1e-105 386.0 229 79.0
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.0e-104 383.6 228 81.6
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 2.5e-103 379.0 229 78.6
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.0e-101 371.7 215 81.4
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 1.7e-99 366.3 229 77.3
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-96 357.1 287 62.7
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.3e-96 355.9 228 71.9
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-95 352.8 237 74.3
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 7.3e-95 350.9 224 74.6
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 1.6e-78 296.6 163 86.5
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 6.9e-77 291.2 180 80.0
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 7.6e-76 287.7 193 67.9
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 7.6e-76 287.7 222 60.4
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 7.6e-76 287.7 194 67.5
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 4.9e-75 285.0 192 65.6
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 1.1e-74 283.9 194 64.9
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 1.1e-74 283.9 199 64.8
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 1.1e-74 283.9 191 64.4
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 1.4e-74 283.5 220 60.9
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 1.9e-74 283.1 192 66.1
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.9e-74 283.1 211 60.7
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 2.5e-74 282.7 190 68.4
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 2.5e-74 282.7 204 61.8
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 4.2e-74 282.0 206 61.2
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 5.5e-74 281.6 192 65.6
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 7.1e-74 281.2 207 60.9
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 9.3e-74 280.8 192 63.5
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.2e-73 280.4 206 61.7
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 1.2e-73 280.4 207 59.4
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.6e-73 280.0 199 63.8
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 2.1e-73 279.6 192 65.1
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 2.1e-73 279.6 207 60.4
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 2.1e-73 279.6 210 60.0
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 6.0e-73 278.1 207 60.9
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 7.9e-73 277.7 207 60.9
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 7.9e-73 277.7 209 60.8
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.3e-72 276.9 192 64.1
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 1.3e-72 276.9 192 64.1
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 2.3e-72 276.2 192 63.5
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 2.3e-72 276.2 191 64.9
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 3.9e-72 275.4 192 62.0
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 3.9e-72 275.4 206 59.7
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 5.1e-72 275.0 192 63.5
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 5.1e-72 275.0 192 63.5
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 6.7e-72 274.6 207 59.9
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 6.7e-72 274.6 192 64.6
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 8.7e-72 274.2 193 66.3
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 8.7e-72 274.2 206 61.2
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 1.1e-71 273.9 191 63.4
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.1e-71 273.9 206 58.7
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-71 273.5 195 63.1
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.9e-71 273.1 206 59.2
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.9e-71 273.1 191 63.9
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 3.3e-71 272.3 196 61.7
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 3.3e-71 272.3 192 63.0
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 4.3e-71 271.9 219 60.3
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 4.3e-71 271.9 200 61.5
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 7.4e-71 271.2 206 58.7
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 7.4e-71 271.2 206 58.7
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 9.6e-71 270.8 197 62.4
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 9.6e-71 270.8 193 62.2
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.6e-70 270.0 190 62.1
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 2.1e-70 269.6 199 60.3
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 3.7e-70 268.9 183 66.1
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 3.7e-70 268.9 191 63.4
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.8e-70 268.5 224 53.6
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 6.2e-70 268.1 192 59.9
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 6.2e-70 268.1 207 58.9
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 6.2e-70 268.1 222 58.1
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.2e-70 268.1 192 60.9
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 1.1e-69 267.3 191 62.3
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.1e-69 267.3 193 62.7
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-69 266.5 206 58.7
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.8e-69 266.5 223 57.8
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.8e-69 266.5 181 65.7
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 3.1e-69 265.8 194 62.4
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 5.3e-69 265.0 200 60.5
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.9e-69 264.6 219 56.2
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 6.9e-69 264.6 200 62.0
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 2.6e-68 262.7 192 62.0
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.7e-67 260.0 193 61.1
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-67 259.2 193 61.7
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-67 258.8 200 62.5
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 5.0e-67 258.5 181 63.5
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 8.4e-67 257.7 188 62.8
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.1e-66 257.3 171 69.6
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 2.5e-66 256.1 191 61.3
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 5.5e-66 255.0 188 59.6
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 5.5e-66 255.0 188 60.6
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 9.3e-66 254.2 182 63.2
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 1.2e-65 253.8 193 59.1
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.2e-65 253.8 193 59.1
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.2e-65 253.8 193 59.1
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-65 253.4 193 59.6
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.6e-65 253.4 193 59.6
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 2.1e-65 253.1 179 63.7
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 6.1e-65 251.5 180 62.2
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 2.3e-64 249.6 227 53.7
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 3.9e-64 248.8 182 61.0
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 2.5e-63 246.1 191 58.6
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 3.3e-63 245.7 190 57.9
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 3.3e-63 245.7 184 62.0
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 3.7e-62 242.3 190 56.8
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 5.3e-61 238.4 191 58.1
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.5e-60 235.3 222 51.4
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.0e-59 234.2 177 61.0
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.2e-57 227.3 177 58.2
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 6.1e-57 224.9 177 58.2
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 7.9e-57 224.6 193 53.9
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.0e-56 224.2 203 51.7
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 1.8e-56 223.4 197 55.3
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 7.4e-55 218.0 192 51.0
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.2e-52 210.7 218 49.5
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 2.9e-51 206.1 145 63.4
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 8.5e-51 204.5 146 63.0
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.8e-48 196.8 154 63.0
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 3.0e-48 196.1 150 62.7
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 3.9e-48 195.7 139 64.7
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 9.7e-47 191.0 221 44.8
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 3.5e-44 182.6 197 48.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 6.3e-38 161.8 113 64.6
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 2.9e-35 152.9 117 60.7
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.1e-34 151.0 206 39.8
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.0e-32 144.4 203 40.4
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.8e-29 133.7 181 39.8
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 2.7e-28 129.8 180 41.1
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.5e-28 129.0 96 63.5
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 3.8e-27 125.9 180 40.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 3.8e-27 125.9 180 40.0
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 2.1e-25 120.2 81 65.4
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 6.1e-25 118.6 190 37.9
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.8e-24 115.2 70 72.9
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.4e-23 112.8 69 68.1
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 5.7e-23 112.1 85 57.6
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.7e-22 110.5 77 62.3
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.2e-20 104.4 206 34.0
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.8e-19 99.4 62 62.9
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.6e-19 98.6 78 59.0
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 5.6e-18 95.5 76 53.9
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-16 91.3 76 52.6
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.8e-16 90.5 69 56.5
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 7.5e-15 85.1 54 61.1
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 9.8e-15 84.7 163 35.0
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 2.9e-14 83.2 148 33.8
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 2.9e-14 83.2 148 33.8
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 2.9e-14 83.2 76 44.7
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.4e-13 80.1 148 34.5
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 4.7e-09 65.9 132 33.3
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 1.5e-07 60.8 39 64.1


User provided reference genes

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