Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-131 473.0 228 100.0
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 1.3e-131 473.0 228 100.0
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 4.1e-130 468.0 228 98.2
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 1.3e-128 463.0 228 96.9
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 3.0e-128 461.8 228 96.5
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-122 443.4 228 95.6
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.6e-112 407.5 228 83.8
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-111 406.8 202 95.5
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 8.1e-110 400.6 228 82.9
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 4.4e-108 394.8 228 82.5
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 9.3e-106 387.1 228 79.4
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 2.3e-104 382.5 228 79.8
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.6e-102 376.3 229 77.7
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 4.9e-99 364.8 220 78.2
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.1e-85 318.9 204 71.1
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.8e-84 314.7 203 69.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 6.5e-83 311.2 197 72.6
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 1.2e-81 307.0 223 65.9
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 1.5e-79 300.1 203 66.0
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.9e-79 299.7 204 64.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 2.5e-79 299.3 204 64.7
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 2.5e-79 299.3 201 66.2
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 7.4e-79 297.7 201 65.2
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 9.7e-79 297.4 204 64.2
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 2.8e-78 295.8 204 63.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 4.8e-78 295.0 202 64.9
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 8.2e-78 294.3 204 63.2
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 8.2e-78 294.3 218 58.7
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 1.4e-77 293.5 201 63.7
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-77 293.1 198 69.7
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.8e-77 293.1 198 69.7
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 1.8e-77 293.1 201 66.2
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 2.4e-77 292.7 194 71.1
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 5.3e-77 291.6 221 61.1
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 6.9e-77 291.2 216 62.0
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 9.0e-77 290.8 201 63.2
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 9.0e-77 290.8 208 63.0
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 5.9e-76 288.1 205 62.9
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.3e-75 287.0 201 63.2
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 1.3e-75 287.0 221 58.8
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.7e-75 286.6 198 69.2
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.7e-75 286.6 198 69.2
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 2.2e-75 286.2 204 63.2
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.9e-75 285.8 203 63.1
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 3.8e-75 285.4 204 63.2
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 5.0e-75 285.0 201 64.2
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.1e-74 283.9 204 61.8
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.9e-74 283.1 190 66.3
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 3.2e-74 282.3 201 64.2
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 4.2e-74 282.0 216 60.2
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 7.2e-74 281.2 204 61.8
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.2e-73 280.4 236 55.5
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 1.6e-73 280.0 194 63.4
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 3.6e-73 278.9 217 57.1
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 6.1e-73 278.1 226 58.4
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 7.9e-73 277.7 203 62.1
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 7.9e-73 277.7 190 65.8
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.0e-72 277.3 208 61.5
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.4e-72 276.9 191 66.0
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.8e-72 276.6 206 60.2
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.3e-72 276.2 214 58.4
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 3.0e-72 275.8 201 62.2
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 3.0e-72 275.8 204 59.3
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 3.9e-72 275.4 216 56.5
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 5.1e-72 275.0 217 55.8
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 8.8e-72 274.2 183 71.0
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 8.8e-72 274.2 194 63.4
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 3.3e-71 272.3 194 63.9
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 4.3e-71 271.9 206 58.7
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 4.3e-71 271.9 220 57.7
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 5.7e-71 271.6 196 61.2
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 5.7e-71 271.6 217 55.8
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 9.7e-71 270.8 206 58.7
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 9.7e-71 270.8 218 56.4
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 1.3e-70 270.4 194 60.8
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 2.2e-70 269.6 194 61.3
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 2.2e-70 269.6 206 58.3
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 2.8e-70 269.2 206 57.8
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 2.8e-70 269.2 206 57.8
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 2.8e-70 269.2 217 58.5
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 4.8e-70 268.5 201 60.2
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.1e-69 267.3 209 56.0
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.1e-69 267.3 216 55.6
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 1.4e-69 266.9 206 57.3
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.8e-69 266.5 217 53.9
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 3.1e-69 265.8 209 56.5
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 4.1e-69 265.4 202 58.9
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 5.3e-69 265.0 217 57.1
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 6.9e-69 264.6 204 58.3
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 6.9e-69 264.6 190 62.6
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 9.1e-69 264.2 188 64.4
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 9.1e-69 264.2 217 56.2
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 1.5e-68 263.5 217 55.8
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.0e-68 263.1 206 56.3
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.9e-68 261.5 194 59.8
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 1.7e-67 260.0 194 59.3
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-67 259.2 216 56.5
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 8.5e-67 257.7 200 57.5
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 3.2e-66 255.8 196 58.2
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 1.2e-65 253.8 196 57.7
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 1.6e-65 253.4 217 51.6
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.6e-65 253.4 222 53.6
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.6e-65 253.4 192 60.4
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 2.1e-65 253.1 196 57.1
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 2.7e-65 252.7 217 53.9
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.7e-65 251.9 199 55.8
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 4.7e-65 251.9 186 60.8
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 7.9e-65 251.1 194 55.7
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 7.9e-65 251.1 168 67.9
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 1.0e-64 250.8 236 52.1
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 3.9e-64 248.8 211 55.5
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 1.5e-63 246.9 196 55.6
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-62 243.8 195 56.4
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-61 240.4 197 59.9
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 1.8e-61 240.0 204 55.4
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 2.4e-61 239.6 222 53.2
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.1e-61 239.2 208 51.0
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 7.0e-61 238.0 203 52.7
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 2.6e-60 236.1 193 56.0
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 3.5e-60 235.7 253 45.8
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-59 234.2 220 62.3
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-59 233.8 188 54.8
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 5.0e-59 231.9 203 53.7
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-58 230.7 212 61.8
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 6.1e-57 224.9 235 47.2
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 2.3e-56 223.0 187 56.1
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 3.0e-56 222.6 194 53.6
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 5.2e-56 221.9 196 51.5
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.5e-55 220.3 206 61.2
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 4.8e-54 215.3 191 50.8
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 4.8e-54 215.3 192 51.6
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 6.3e-54 214.9 177 57.1
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.4e-53 213.8 150 61.3
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 1.3e-51 207.2 200 50.0
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 1.7e-51 206.8 180 63.3
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.6e-49 200.3 149 57.0
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 2.1e-49 199.9 151 62.3
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 8.0e-49 198.0 201 48.3
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 5.7e-47 191.8 144 60.4
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.1e-45 187.6 162 58.0
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.4e-45 185.3 119 70.6
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 5.9e-44 181.8 181 46.4
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 4.7e-41 172.2 121 61.2
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 3.7e-38 162.5 111 65.8
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 1.5e-34 150.6 196 42.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-32 144.4 75 93.3
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.5e-31 140.6 204 38.2
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 7.0e-29 131.7 184 47.3
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 1.2e-28 131.0 156 48.1
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.2e-28 131.0 201 36.8
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 1.0e-27 127.9 149 49.0
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 8.0e-25 118.2 96 53.1
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 1.0e-24 117.9 87 55.2
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 1.4e-24 117.5 81 58.0
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 3.4e-23 112.8 70 71.4
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.4e-23 112.5 81 60.5
Cre04.g215600 Chlamydomonas reinhardtii HOM05D004249 ORTHO05D005015 1.3e-22 110.9 213 33.3
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 1.7e-22 110.5 82 58.5
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 8.3e-22 108.2 79 60.8
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 4.1e-21 105.9 77 58.4
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.0e-19 99.8 92 50.0
C08p38820 Brassica napus HOM05D000481 ORTHO05D000471 2.0e-15 87.0 85 58.8
BraA03t09486Z Brassica rapa HOM05D004249 ORTHO05D005015 2.0e-15 87.0 44 90.9
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 2.6e-15 86.7 153 33.3
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.5e-15 85.1 56 58.9
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.4e-14 82.0 74 45.9
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 3.2e-13 79.7 162 30.9
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 4.0e-08 62.8 46 65.2


User provided reference genes

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