Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-209 733.0 399 100.0
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-161 572.8 404 86.1
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 5.6e-122 441.8 348 78.4
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 3.6e-121 439.1 350 80.3
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 3.6e-121 439.1 348 79.9
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.6e-119 433.0 350 78.9
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 1.2e-116 424.1 354 72.9
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 6.6e-115 418.3 350 68.9
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 2.1e-113 413.3 349 68.5
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 6.2e-113 411.8 353 67.1
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 8.0e-113 411.4 357 66.7
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 1.0e-112 411.0 354 68.9
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-112 410.2 313 71.9
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 8.9e-112 407.9 305 72.8
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-111 407.5 305 72.8
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.2e-111 407.5 305 72.8
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 2.9e-110 402.9 346 69.1
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 2.4e-109 399.8 319 69.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.6e-99 365.2 353 66.6
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 8.6e-99 364.8 306 65.0
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 3.4e-95 352.8 304 63.5
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 4.7e-89 332.4 304 58.9
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 6.2e-89 332.0 305 59.0
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 6.2e-89 332.0 322 57.8
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 6.2e-89 332.0 305 60.0
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 8.9e-88 328.2 304 59.5
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.5e-87 327.4 304 60.2
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.5e-87 327.4 354 57.6
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 2.6e-87 326.6 304 59.2
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 2.6e-87 326.6 307 58.6
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.3e-86 324.3 316 57.3
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.7e-86 323.9 304 59.2
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 6.4e-86 322.0 302 58.6
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-85 321.2 313 57.5
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 1.1e-85 321.2 313 57.5
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 2.4e-85 320.1 310 58.7
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 3.2e-85 319.7 314 56.1
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 7.1e-85 318.5 348 56.0
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 9.3e-85 318.2 303 57.1
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 9.3e-85 318.2 304 59.5
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 9.3e-85 318.2 304 60.5
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 2.1e-84 317.0 310 56.5
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.5e-84 316.2 310 58.1
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.5e-84 316.2 316 56.0
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 4.6e-84 315.8 304 59.9
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 4.6e-84 315.8 307 56.4
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 7.8e-84 315.1 311 57.6
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 1.7e-83 313.9 316 55.7
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 3.0e-83 313.2 312 57.7
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 3.0e-83 313.2 311 55.9
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 8.7e-83 311.6 303 57.1
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 3.3e-82 309.7 304 57.2
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 7.3e-82 308.5 311 54.3
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 9.6e-82 308.1 304 57.6
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 1.3e-81 307.8 316 57.3
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.6e-81 307.4 310 55.5
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 4.8e-81 305.8 302 57.6
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 4.8e-81 305.8 311 54.7
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 6.2e-81 305.4 312 56.4
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 8.1e-81 305.1 304 58.9
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 8.1e-81 305.1 305 56.7
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 1.1e-80 304.7 310 54.2
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.4e-80 304.3 305 55.4
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 1.4e-80 304.3 311 55.0
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 3.1e-80 303.1 304 55.9
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 4.0e-80 302.8 311 53.4
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.3e-80 302.4 311 55.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 6.9e-80 302.0 312 56.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 9.0e-80 301.6 310 53.5
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 9.9e-79 298.1 307 56.4
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 9.9e-79 298.1 312 56.1
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 1.3e-78 297.7 304 54.9
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.7e-78 297.4 307 56.7
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.9e-78 295.8 316 53.5
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 4.9e-78 295.8 310 53.9
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 4.9e-78 295.8 304 56.2
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 9.3e-77 291.6 310 52.9
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 1.2e-76 291.2 302 54.6
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.2e-76 291.2 316 53.2
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 1.6e-76 290.8 304 54.6
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.6e-76 290.8 310 52.3
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.6e-76 290.8 310 52.3
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.1e-76 290.4 312 54.2
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.7e-76 290.0 310 52.9
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.7e-76 290.0 311 53.1
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.6e-76 289.3 348 53.4
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 1.0e-75 288.1 315 51.1
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.3e-75 287.0 306 53.6
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.9e-75 286.2 305 55.1
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.6e-75 285.4 311 52.7
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 8.7e-75 285.0 314 53.8
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 1.1e-74 284.6 304 53.3
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.1e-74 284.6 296 54.7
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 1.9e-74 283.9 304 53.3
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.5e-74 283.5 307 52.4
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 2.5e-74 283.5 307 52.4
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 4.3e-74 282.7 305 50.8
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 4.3e-74 282.7 316 52.5
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 7.4e-74 282.0 302 52.3
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 7.4e-74 282.0 344 49.4
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 6.2e-73 278.9 348 51.4
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.4e-72 277.7 354 46.9
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.8e-72 277.3 306 52.0
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 2.6e-71 273.5 304 51.6
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.6e-71 273.5 341 48.1
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.4e-69 267.7 309 49.8
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 5.5e-69 265.8 282 52.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.3e-67 260.4 302 53.0
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 3.3e-66 256.5 306 53.3
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 2.4e-64 250.4 278 51.4
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.2e-63 248.1 304 50.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 7.6e-63 245.4 305 45.9
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 4.6e-60 236.1 302 46.7
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 1.8e-59 234.2 310 47.7
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 3.9e-59 233.0 318 46.5
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 6.7e-59 232.3 316 43.4
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 2.5e-58 230.3 277 48.7
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.8e-54 216.5 209 57.4
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.4e-53 214.5 263 46.4
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 6.9e-48 195.7 287 42.5
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 5.9e-47 192.6 355 37.2
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-46 191.8 208 54.3
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 6.7e-43 179.1 238 49.2
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 4.8e-41 172.9 179 52.0
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 5.5e-37 159.5 301 34.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 7.2e-37 159.1 303 33.3
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 2.3e-35 154.1 300 33.7
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 8.8e-35 152.1 185 46.5
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 8.8e-35 152.1 296 38.2
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.8e-32 144.4 279 34.1
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 2.4e-32 144.1 299 31.8
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 2.0e-31 141.0 77 83.1
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 8.0e-28 129.0 255 37.6
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 8.2e-25 119.0 68 79.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.9e-22 110.5 122 55.7
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 2.9e-22 110.5 122 55.7
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 4.2e-21 106.7 50 94.0
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 1.0e-19 102.1 97 64.9
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.3e-19 100.9 86 65.1
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 5.2e-19 99.8 121 47.9
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 3.7e-17 93.6 43 97.7
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.3e-14 85.1 131 49.6
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 8.0e-12 75.9 293 25.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 4.0e-11 73.6 119 39.5
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 5.7e-10 69.7 54 59.3
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 7.5e-10 69.3 52 61.5
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.3e-09 68.6 59 55.9
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 4.9e-09 66.6 34 91.2
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 4.9e-09 66.6 184 29.3
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 6.3e-09 66.2 50 62.0
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 7.0e-08 62.8 44 63.6
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-06 58.5 33 69.7
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 1.3e-06 58.5 33 69.7
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 1.3e-06 58.5 33 69.7
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.3e-06 57.8 33 69.7
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 5.0e-06 56.6 39 64.1


User provided reference genes

Program Settings