Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 4.5e-189 664.5 341 100.0
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 7.0e-174 614.0 348 92.0
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 1.3e-172 609.8 343 94.8
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 6.5e-172 607.4 343 94.5
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 3.5e-165 585.1 343 90.4
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 1.3e-159 566.6 342 88.9
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 3.7e-159 565.1 351 85.8
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 2.4e-158 562.4 351 85.5
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 4.5e-157 558.1 351 84.6
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 2.9e-156 555.4 349 85.7
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.1e-155 553.5 338 86.7
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 1.5e-155 553.1 351 84.6
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 6.1e-154 547.7 338 86.1
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 8.0e-154 547.4 351 83.5
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 5.2e-153 544.7 354 82.8
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 8.9e-153 543.9 338 85.8
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.1e-150 537.0 354 82.5
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 5.4e-150 534.6 354 82.5
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 7.0e-150 534.3 354 82.8
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 7.0e-142 507.7 340 79.4
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 7.8e-141 504.2 347 78.1
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.9e-139 499.6 353 75.6
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 4.3e-139 498.4 340 78.5
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.2e-138 496.9 353 75.1
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 8.1e-138 494.2 340 77.1
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 1.2e-136 490.3 354 73.7
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 9.8e-136 487.3 335 77.0
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.3e-124 449.5 347 68.0
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.3e-123 444.5 332 69.9
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 9.6e-123 444.1 332 70.2
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 2.1e-122 443.0 306 73.5
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.7e-122 441.8 332 69.9
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 2.0e-120 436.4 276 78.6
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 2.6e-120 436.0 319 69.0
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 3.4e-120 435.6 330 69.7
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 5.8e-120 434.9 337 68.0
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 7.6e-120 434.5 332 67.8
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.3e-119 433.7 318 70.4
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 2.9e-119 432.6 318 70.8
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 4.9e-119 431.8 303 73.3
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 4.9e-119 431.8 276 77.9
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 8.4e-119 431.0 276 77.2
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 8.4e-119 431.0 302 72.5
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.1e-118 430.6 312 70.8
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 1.9e-118 429.9 275 77.1
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 4.2e-118 428.7 276 77.2
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 4.2e-118 428.7 275 76.7
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 7.1e-118 427.9 287 76.0
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 9.3e-118 427.6 276 77.2
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.2e-117 427.2 327 67.0
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.7e-117 426.0 278 77.0
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 7.8e-117 424.5 316 69.0
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 3.9e-116 422.2 327 67.9
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.1e-115 420.6 324 69.1
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 1.5e-115 420.2 311 70.4
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.5e-115 420.2 276 75.7
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 1.5e-115 420.2 346 65.6
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 2.5e-115 419.5 314 67.2
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.3e-115 419.1 326 66.9
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 9.6e-115 417.5 276 75.0
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.1e-114 416.4 313 70.0
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 2.8e-114 416.0 277 75.1
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.8e-114 416.0 341 66.6
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 3.6e-114 415.6 325 68.0
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 3.6e-114 415.6 277 75.5
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.8e-114 415.2 276 75.7
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 1.4e-113 413.7 306 67.6
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.1e-113 412.5 277 74.7
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 3.1e-113 412.5 296 72.0
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.1e-113 412.5 278 74.1
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 4.0e-113 412.1 308 68.8
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 4.0e-113 412.1 330 67.0
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 4.0e-113 412.1 320 66.2
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 5.3e-113 411.8 324 67.3
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 9.0e-113 411.0 300 68.7
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.5e-112 410.2 274 74.5
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.5e-112 410.2 277 72.2
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 2.0e-112 409.8 325 67.4
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.6e-112 409.5 275 74.9
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 2.6e-112 409.5 331 67.4
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 3.4e-112 409.1 276 74.6
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 7.6e-112 407.9 322 65.5
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 9.9e-112 407.5 289 73.0
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 9.9e-112 407.5 324 65.7
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 9.9e-112 407.5 345 64.1
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 2.2e-111 406.4 274 73.4
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 2.2e-111 406.4 336 64.0
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 2.9e-111 406.0 325 67.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 2.9e-111 406.0 277 73.3
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 2.9e-111 406.0 308 68.8
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 3.8e-111 405.6 298 69.8
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 3.8e-111 405.6 276 73.6
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 4.9e-111 405.2 299 70.2
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.4e-110 402.9 271 75.6
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.2e-110 402.5 310 68.1
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 4.2e-110 402.1 278 73.4
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 9.3e-110 401.0 307 68.7
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 2.1e-109 399.8 309 66.0
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.7e-109 399.4 276 73.2
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 3.5e-109 399.1 311 65.0
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 4.6e-109 398.7 276 73.9
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 6.0e-109 398.3 304 65.8
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 6.0e-109 398.3 321 66.7
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 7.9e-109 397.9 307 67.8
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 1.7e-108 396.7 315 65.4
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.5e-107 392.9 277 70.4
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 5.6e-107 391.7 315 63.8
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 7.4e-107 391.3 272 71.0
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.8e-106 389.4 274 70.8
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.1e-105 387.5 277 69.7
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 1.1e-105 387.5 265 74.0
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 3.1e-105 386.0 272 71.0
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.1e-105 386.0 330 60.9
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 4.0e-105 385.6 312 63.1
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 5.3e-105 385.2 278 66.5
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 6.9e-105 384.8 274 69.3
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 1.2e-104 384.0 317 62.1
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.5e-104 383.6 308 63.0
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.7e-103 380.2 317 64.4
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 1.7e-103 380.2 274 68.6
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.8e-103 379.0 254 74.8
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.7e-101 372.9 256 73.0
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 6.0e-101 371.7 274 65.7
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 6.7e-100 368.2 344 59.0
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 9.6e-99 364.4 311 62.4
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 2.8e-98 362.8 333 57.4
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 1.8e-97 360.1 306 59.5
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 3.1e-97 359.4 275 68.0
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 3.1e-97 359.4 281 64.4
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 3.4e-96 355.9 263 67.7
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 7.6e-96 354.8 293 61.8
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.2e-93 347.4 258 65.5
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-93 347.1 306 58.8
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 2.1e-93 346.7 309 61.5
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 7.9e-93 344.7 274 62.4
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.5e-88 330.5 277 65.0
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.1e-83 314.3 274 56.9
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.5e-83 313.9 256 65.2
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 2.5e-83 313.2 276 58.0
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 2.2e-79 300.1 276 55.8
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 1.1e-78 297.7 325 56.9
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 3.6e-77 292.7 186 79.0
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 5.0e-71 272.3 282 53.9
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 8.5e-71 271.6 278 52.2
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 7.9e-69 265.0 229 62.4
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 4.4e-67 259.2 273 47.6
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 7.4e-67 258.5 206 65.5
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.1e-65 254.6 288 50.3
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.1e-65 253.1 189 68.3
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.4e-60 237.7 211 61.1
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.0e-60 236.1 236 57.2
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 4.2e-54 216.1 174 67.8
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.4e-51 206.1 224 53.6
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 7.0e-49 198.7 159 63.5
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 1.6e-48 197.6 109 85.3
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 9.5e-46 188.3 171 55.6
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 4.3e-38 162.9 90 84.4
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.1e-37 160.6 175 52.6
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 4.6e-32 142.9 77 85.7
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 5.9e-32 142.5 187 44.9
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.1e-30 138.3 280 32.9
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.5e-30 137.1 131 54.2
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 7.0e-25 119.0 88 67.0
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 1.2e-24 118.2 89 66.3
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 1.2e-24 118.2 68 83.8
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 1.5e-22 111.3 151 45.0
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.7e-16 90.5 157 36.9
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.4e-09 67.4 81 45.7
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 3.2e-09 67.0 66 60.6
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 3.2e-09 67.0 172 30.8
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 2.1e-08 64.3 83 44.6
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.6e-07 59.3 39 76.9


User provided reference genes

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