Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB06g29513 Brassica carinata HOM05D001249 ORTHO05D003440 4.3e-92 341.3 169 100.0
BcaC02g07138 Brassica carinata HOM05D001249 ORTHO05D003440 4.3e-92 341.3 169 100.0
BolC4t28588H Brassica oleracea HOM05D001249 ORTHO05D003440 1.6e-91 339.3 167 100.0
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 1.1e-87 326.6 161 99.4
A04p33180 Brassica napus HOM05D001249 ORTHO05D003440 2.5e-87 325.5 161 98.8
BraA04t18777Z Brassica rapa HOM05D001249 ORTHO05D003440 2.5e-87 325.5 161 98.8
BcaB01g03333 Brassica carinata HOM05D001249 ORTHO05D003440 7.9e-86 320.5 161 95.7
BcaB06g29354 Brassica carinata HOM05D001249 ORTHO05D003440 1.3e-85 319.7 161 96.3
CARHR139220 Cardamine hirsuta HOM05D001249 ORTHO05D003440 1.3e-85 319.7 160 97.5
Thhalv10001537m.g Eutrema salsugineum HOM05D001249 ORTHO05D003440 1.3e-85 319.7 161 96.3
AT2G44060 Arabidopsis thaliana HOM05D001249 ORTHO05D003440 1.8e-85 319.3 161 95.7
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 3.0e-85 318.5 161 95.0
Carub.0004s2661 Capsella rubella HOM05D001249 ORTHO05D003440 3.0e-85 318.5 160 96.9
AL4G42930 Arabidopsis lyrata HOM05D001249 ORTHO05D003440 6.7e-85 317.4 160 96.2
A03p24660 Brassica napus HOM05D001249 ORTHO05D003440 1.9e-84 315.8 161 95.0
BraA03t11672Z Brassica rapa HOM05D001249 ORTHO05D003440 1.9e-84 315.8 161 95.0
C03p29400 Brassica napus HOM05D001249 ORTHO05D003440 2.5e-84 315.5 161 94.4
Sp4g26140 Schrenkiella parvula HOM05D001249 ORTHO05D003440 2.5e-84 315.5 161 94.4
BolC3t15287H Brassica oleracea HOM05D001249 ORTHO05D003440 5.7e-84 314.3 161 93.8
Aa31LG1G25730 Aethionema arabicum HOM05D001249 ORTHO05D003440 9.4e-79 297.0 159 88.7
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 4.6e-78 294.7 161 89.4
THA.LOC104802350 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 2.8e-75 285.4 160 82.5
THA.LOC104804361 Tarenaya hassleriana HOM05D001249 ORTHO05D003440 4.8e-75 284.6 160 81.9
ClCG06G010080 Citrullus lanatus HOM05D001249 ORTHO05D003440 2.5e-71 272.3 171 77.2
RcHm_v2.0_Chr2g0084381 Rosa chinensis HOM05D001249 ORTHO05D003440 7.2e-71 270.8 159 81.1
CsaV3_2G011930 Cucumis sativus L. HOM05D001249 ORTHO05D003440 1.2e-70 270.0 166 76.5
PSO170G3486 Papaver somniferum HOM05D001249 ORTHO05D003440 1.2e-70 270.0 167 76.0
PSO384G3429 Papaver somniferum HOM05D001249 ORTHO05D003440 1.2e-70 270.0 167 76.0
FAN26G0381 Fragaria x ananassa HOM05D001249 ORTHO05D003440 1.6e-70 269.6 159 81.8
Lju124C5T8 Lonicera japonica HOM05D001249 ORTHO05D003440 2.1e-70 269.2 159 79.9
MELO3C020416.2 Cucumis melo HOM05D001249 ORTHO05D003440 2.7e-70 268.9 166 76.5
FvH4_1g00090 Fragaria vesca HOM05D001249 ORTHO05D003440 3.6e-70 268.5 159 81.1
FAN28G2707 Fragaria x ananassa HOM05D001249 ORTHO05D003440 3.6e-70 268.5 159 81.1
Cfa008531 Carpinus fangiana HOM05D001249 ORTHO05D003440 4.7e-70 268.1 159 76.7
Sabra07G0115100 Salix brachista HOM05D001249 ORTHO05D003440 4.7e-70 268.1 164 76.2
Lju470C1T4 Lonicera japonica HOM05D001249 ORTHO05D003440 6.1e-70 267.7 160 77.5
vmacro00731 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 6.1e-70 267.7 167 74.9
MD02G1000600 Malus domestica HOM05D001249 ORTHO05D003440 1.8e-69 266.2 169 76.9
GSVIVG01038264001 Vitis vinifera HOM05D001249 ORTHO05D003440 2.3e-69 265.8 172 73.8
CANSAT56G2692 Cannabis sativa HOM05D001249 ORTHO05D003440 3.0e-69 265.4 164 77.4
Atru.chr3.1961 Acer truncatum HOM05D001249 ORTHO05D003440 3.9e-69 265.0 159 79.9
MD15G1142200 Malus domestica HOM05D001249 ORTHO05D003440 5.1e-69 264.6 160 77.5
Prupe.7G271000 Prunus persica HOM05D001249 ORTHO05D003440 5.1e-69 264.6 160 79.4
Ciclev10020871m.g Citrus clementina HOM05D001249 ORTHO05D003440 6.7e-69 264.2 160 77.5
Sed0007404 Sechium edule HOM05D001249 ORTHO05D003440 6.7e-69 264.2 173 72.8
Cc03_g16190 Coffea canephora HOM05D001249 ORTHO05D003440 8.8e-69 263.8 160 78.1
CiPaw.02G125500 Carya illinoinensis HOM05D001249 ORTHO05D003440 3.3e-68 261.9 160 75.6
Oeu014978.1 Olea europaea HOM05D001249 ORTHO05D003440 3.3e-68 261.9 160 76.9
TAR362G1111 Trochodendron aralioides HOM05D001249 ORTHO05D003440 3.3e-68 261.9 160 76.9
PGR142G4250 Punica granatum HOM05D001249 ORTHO05D003440 4.4e-68 261.5 159 76.7
Cpa.g.sc9.242 Carica papaya HOM05D001249 ORTHO05D003440 7.4e-68 260.8 160 76.9
Glyma.20G044800 Glycine max HOM05D001249 ORTHO05D003440 7.4e-68 260.8 170 75.3
Potri.007G146300 Populus trichocarpa HOM05D001249 ORTHO05D003440 9.7e-68 260.4 159 75.5
LjContig00564g0000582 Lotus japonicus HOM05D001249 ORTHO05D003440 1.3e-67 260.0 159 76.7
SalBow6G0898 Salvia bowleyana HOM05D001249 ORTHO05D003440 1.3e-67 260.0 171 71.9
vmacro03772 Vaccinium macrocarpon HOM05D001249 ORTHO05D003440 1.3e-67 260.0 161 75.2
QL10p064706 Quercus lobata HOM05D001249 ORTHO05D003440 1.7e-67 259.6 160 75.0
QL10p064865 Quercus lobata HOM05D001249 ORTHO05D003440 1.7e-67 259.6 160 75.0
QL10p065831 Quercus lobata HOM05D001249 ORTHO05D003440 1.7e-67 259.6 160 75.0
Eucgr.H00245 Eucalyptus grandis HOM05D001249 ORTHO05D003440 2.2e-67 259.2 159 74.8
Manes.05G208200 Manihot esculenta HOM05D001249 ORTHO05D003440 2.2e-67 259.2 159 76.7
HPP92_001207 Vanilla planifolia HOM05D001249 ORTHO05D003440 2.2e-67 259.2 159 74.8
Sed0022992 Sechium edule HOM05D001249 ORTHO05D003440 2.8e-67 258.8 159 75.5
MSTRG.8086 Avicennia marina HOM05D001249 ORTHO05D003440 3.7e-67 258.5 167 71.9
Duzib093G0930 Durio zibethinus HOM05D001249 ORTHO05D003440 3.7e-67 258.5 160 75.6
Nn1g09415 Nelumbo nucifera HOM05D001249 ORTHO05D003440 3.7e-67 258.5 160 75.6
Sc25g0002220 Simmondsia chinensis HOM05D001249 ORTHO05D003440 3.7e-67 258.5 159 74.8
TPR.G16415 Trifolium pratense HOM05D001249 ORTHO05D003440 4.8e-67 258.1 160 78.1
Dinv24741 Davidia involucrata HOM05D001249 ORTHO05D003440 6.3e-67 257.7 164 75.6
Aqoxy6G00001 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 8.2e-67 257.3 160 74.4
SGA_v2.0_scaffold37G14908 Striga asiatica HOM05D001249 ORTHO05D003440 8.2e-67 257.3 159 76.1
MBI07_g27882_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.1e-66 256.9 166 72.9
Migut.N03015 Erythranthe guttata HOM05D001249 ORTHO05D003440 1.4e-66 256.5 160 75.0
Gohir.A01G231800 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.8e-66 256.1 160 74.4
Gohir.D01G221900 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.8e-66 256.1 160 74.4
Gorai.002G268600 Gossypium raimondii HOM05D001249 ORTHO05D003440 1.8e-66 256.1 160 74.4
Nitab4.5_0003681g0020 Nicotiana tabacum HOM05D001249 ORTHO05D003440 1.8e-66 256.1 172 70.9
Thecc.05G000700 Theobroma cacao HOM05D001249 ORTHO05D003440 1.8e-66 256.1 160 75.0
ECA248G2519 Erigeron canadensis HOM05D001249 ORTHO05D003440 3.1e-66 255.4 159 76.7
Lj6g0018713 Lotus japonicus HOM05D001249 ORTHO05D003440 3.1e-66 255.4 159 75.5
Medtr5g088850 Medicago truncatula HOM05D001249 ORTHO05D003440 3.1e-66 255.4 160 76.9
SGA_v2.0_scaffold12G06226 Striga asiatica HOM05D001249 ORTHO05D003440 3.1e-66 255.4 159 77.4
VMungo0540G2213 Vigna mungo HOM05D001249 ORTHO05D003440 3.1e-66 255.4 159 77.4
Phvul.008G203600 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 4.1e-66 255.0 161 73.3
Glyma.14G037300 Glycine max HOM05D001249 ORTHO05D003440 7.0e-66 254.2 160 73.8
COL.COLO4_32523 Corchorus olitorius HOM05D001249 ORTHO05D003440 9.1e-66 253.8 163 74.2
Nitab4.5_0000348g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 9.1e-66 253.8 172 70.3
ATR0743G044 Amborella trichopoda HOM05D001249 ORTHO05D003440 1.5e-65 253.1 160 73.8
Glyma.02G277300 Glycine max HOM05D001249 ORTHO05D003440 1.5e-65 253.1 160 73.8
Medtr3g045190 Medicago truncatula HOM05D001249 ORTHO05D003440 1.5e-65 253.1 172 71.5
ATR0225G022 Amborella trichopoda HOM05D001249 ORTHO05D003440 4.5e-65 251.5 167 68.3
PGSC0003DMG400006460 Solanum tuberosum HOM05D001249 ORTHO05D003440 4.5e-65 251.5 160 73.8
Lalb_Chr04g0249331 Lupinus albus HOM05D001249 ORTHO05D003440 5.9e-65 251.1 161 72.0
Lalb_Chr10g0106081 Lupinus albus HOM05D001249 ORTHO05D003440 5.9e-65 251.1 160 73.1
HanXRQChr01g0017591 Helianthus annuus HOM05D001249 ORTHO05D003440 7.7e-65 250.8 159 73.0
Phvul.006G018100 Phaseolus vulgaris HOM05D001249 ORTHO05D003440 7.7e-65 250.8 159 75.5
Migut.G00799 Erythranthe guttata HOM05D001249 ORTHO05D003440 1.0e-64 250.4 164 69.5
Ah.07g203310 Amaranthus hybridus HOM05D001249 ORTHO05D003440 1.3e-64 250.0 159 73.6
VMungo0647G1653 Vigna mungo HOM05D001249 ORTHO05D003440 1.3e-64 250.0 159 73.6
CiPaw.01G202900 Carya illinoinensis HOM05D001249 ORTHO05D003440 1.7e-64 249.6 158 73.4
CDE04G1507 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 2.2e-64 249.2 167 68.9
Sopen12g008300 Solanum pennellii HOM05D001249 ORTHO05D003440 2.2e-64 249.2 160 72.5
TWI63G1312 Tripterygium wilfordii HOM05D001249 ORTHO05D003440 2.2e-64 249.2 159 73.6
CDE09G1295 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 2.9e-64 248.8 166 68.1
TPR.G11914 Trifolium pratense HOM05D001249 ORTHO05D003440 5.0e-64 248.1 159 71.1
CDE02G4753 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 8.5e-64 247.3 166 67.5
CAN.G68.1 Capsicum annuum HOM05D001249 ORTHO05D003440 1.1e-63 246.9 163 69.9
Solyc08g015690.4 Solanum lycopersicum HOM05D001249 ORTHO05D003440 1.4e-63 246.5 164 69.5
Sopen08g005800 Solanum pennellii HOM05D001249 ORTHO05D003440 1.4e-63 246.5 164 69.5
arahy.Tifrunner.gnm1.ann1.GD18YF Arachis hypogaea HOM05D001249 ORTHO05D003440 2.5e-63 245.7 165 69.7
Peaxi162Scf00057g01912 Petunia axillaris HOM05D001249 ORTHO05D003440 2.5e-63 245.7 164 70.1
Peaxi162Scf63976g00001 Petunia axillaris HOM05D001249 ORTHO05D003440 3.2e-63 245.4 172 68.6
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 3.2e-63 245.4 166 69.3
Lsat_1_v5_gn_1_82580 Lactuca sativa HOM05D001249 ORTHO05D003440 5.5e-63 244.6 156 73.1
Nitab4.5_0005148g0040 Nicotiana tabacum HOM05D001249 ORTHO05D003440 5.5e-63 244.6 169 70.4
arahy.Tifrunner.gnm1.ann1.4U54KW Arachis hypogaea HOM05D001249 ORTHO05D003440 7.2e-63 244.2 165 69.1
Peaxi162Scf01205g00175 Petunia axillaris HOM05D001249 ORTHO05D003440 1.2e-62 243.4 154 72.7
Psat2g021400 Pisum sativum HOM05D001249 ORTHO05D003440 1.2e-62 243.4 161 72.0
PGSC0003DMG400013715 Solanum tuberosum HOM05D001249 ORTHO05D003440 1.2e-62 243.4 160 71.2
DCAR_027489 Daucus carota HOM05D001249 ORTHO05D003440 1.6e-62 243.0 172 66.3
Ca_06180_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 2.1e-62 242.7 153 74.5
Nn5g29337 Nelumbo nucifera HOM05D001249 ORTHO05D003440 2.1e-62 242.7 167 65.3
Lalb_Chr15g0080151 Lupinus albus HOM05D001249 ORTHO05D003440 2.7e-62 242.3 160 71.2
Aqoxy6G00880 Aquilegia oxysepala HOM05D001249 ORTHO05D003440 3.6e-62 241.9 163 66.3
TAR376G0188 Trochodendron aralioides HOM05D001249 ORTHO05D003440 6.1e-62 241.1 167 64.1
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 8.0e-62 240.7 160 70.6
AUR62023689 Chenopodium quinoa HOM05D001249 ORTHO05D003440 8.0e-62 240.7 160 68.8
DCAR_023793 Daucus carota HOM05D001249 ORTHO05D003440 1.0e-61 240.4 171 64.3
Ca_26658_v3 Cicer arietinum L. HOM05D001249 ORTHO05D003440 1.8e-61 239.6 154 69.5
SEGI_02724 Sequoiadendron giganteum HOM05D001249 ORTHO05D003440 4.4e-60 235.0 172 63.4
PSO541G5475 Papaver somniferum HOM05D001249 ORTHO05D003440 5.7e-60 234.6 167 63.5
AUR62002497 Chenopodium quinoa HOM05D001249 ORTHO05D003440 7.4e-60 234.2 154 69.5
EL10Ac3g06181 Beta vulgaris HOM05D001249 ORTHO05D003440 9.7e-60 233.8 159 67.3
MBI16_g27589_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 1.3e-59 233.4 167 63.5
Os03g0843300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 3.7e-59 231.9 160 66.9
ECA233G0816 Erigeron canadensis HOM05D001249 ORTHO05D003440 8.2e-59 230.7 163 63.8
Hund12304 Selenicereus undatus HOM05D001249 ORTHO05D003440 1.6e-57 226.5 164 64.0
Zm00001eb064120 Zea mays HOM05D001249 ORTHO05D003440 1.6e-57 226.5 159 66.7
PSO675G8641 Papaver somniferum HOM05D001249 ORTHO05D003440 2.6e-57 225.7 164 62.8
Lju41A14T32 Lonicera japonica HOM05D001249 ORTHO05D003440 8.8e-53 210.7 131 75.6
AagrBONN_evm.TU.Sc2ySwM_117.2490 Anthoceros agrestis HOM05D001249 ORTHO05D003440 5.7e-52 208.0 168 55.4
arahy.Tifrunner.gnm1.ann1.L9LT8B Arachis hypogaea HOM05D001249 ORTHO05D003440 2.8e-51 205.7 129 75.2
Mapoly0002s0220 Marchantia polymorpha HOM05D001249 ORTHO05D003440 3.7e-51 205.3 170 52.9
arahy.Tifrunner.gnm1.ann1.R434E2 Arachis hypogaea HOM05D001249 ORTHO05D003440 3.1e-50 202.2 127 74.8
Gohir.A03G218500 Gossypium hirsutum HOM05D001249 ORTHO05D003440 3.1e-50 202.2 160 63.8
CAN.G207.8 Capsicum annuum HOM05D001249 ORTHO05D003440 2.7e-49 199.1 154 61.0
Manes.01G009601 Manihot esculenta HOM05D001249 ORTHO05D003440 3.5e-49 198.7 154 57.1
Pp3c24_14840 Physcomitrium patens HOM05D001249 ORTHO05D003440 7.7e-49 197.6 166 56.0
SMO367G0480 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 2.9e-48 195.7 167 53.3
Pp3c23_18440 Physcomitrium patens HOM05D001249 ORTHO05D003440 7.2e-47 191.0 165 55.8
Os07g0272300 Oryza sativa ssp. japonica HOM05D001249 ORTHO05D003440 1.2e-46 190.3 133 63.9
CDE07G0014 Ceratophyllum demersum HOM05D001249 ORTHO05D003440 3.0e-45 185.7 148 56.1
Gohir.A07G233300 Gossypium hirsutum HOM05D001249 ORTHO05D003440 4.4e-44 181.8 153 60.8
QL10p064899 Quercus lobata HOM05D001249 ORTHO05D003440 3.1e-42 175.6 160 56.2
Zm00001eb304760 Zea mays HOM05D001249 ORTHO05D003440 5.4e-42 174.9 164 52.4
CSS0028444 Camellia sinensis var. sinensis HOM05D001249 ORTHO05D003440 3.6e-38 162.2 100 76.0
MBI10_g03654_MAGBIO Magnolia biondii HOM05D001249 ORTHO05D003440 2.8e-35 152.5 160 44.4
CBR_g75560 Chara braunii HOM05D001249 ORTHO05D003440 7.3e-31 137.9 160 40.0
CBR_g39190 Chara braunii HOM05D001249 ORTHO05D003440 8.0e-30 134.4 158 39.2
CBR_g55417 Chara braunii HOM05D001249 ORTHO05D003440 1.0e-29 134.0 160 36.9
Gohir.A08G253400 Gossypium hirsutum HOM05D001249 ORTHO05D003440 1.7e-27 126.7 133 50.4
Solyc12g017520.1 Solanum lycopersicum HOM05D001249 ORTHO05D031248 5.2e-21 105.1 56 80.4
SHI34456 Sapria himalayana HOM05D001249 ORTHO05D003440 3.7e-19 99.0 67 68.7
Nitab4.5_0006083g0030 Nicotiana tabacum HOM05D001249 ORTHO05D031248 1.9e-18 96.7 59 74.6
SHI01299 Sapria himalayana HOM05D001249 ORTHO05D003440 1.2e-17 94.0 67 64.2
SHI33111 Sapria himalayana HOM05D001249 ORTHO05D003440 3.0e-16 89.4 67 62.7
SHI13210 Sapria himalayana HOM05D001249 ORTHO05D003440 8.6e-16 87.8 67 61.2
SHI23769 Sapria himalayana HOM05D001249 ORTHO05D003440 4.7e-14 82.0 58 69.0
SHI15069 Sapria himalayana HOM05D001249 ORTHO05D003440 2.0e-12 76.6 56 66.1
SHI51788 Sapria himalayana HOM05D001249 ORTHO05D003440 5.8e-12 75.1 67 53.7
SHI53105 Sapria himalayana HOM05D001249 ORTHO05D003440 5.8e-12 75.1 53 62.3
SHI50201 Sapria himalayana HOM05D001249 ORTHO05D003440 7.5e-12 74.7 63 52.4
Aqoxy5G02073 Aquilegia oxysepala HOM05D001249 ORTHO05D031248 9.9e-12 74.3 39 84.6
SHI50079 Sapria himalayana HOM05D001249 ORTHO05D003440 4.9e-11 72.0 67 52.2
SHI22067 Sapria himalayana HOM05D001249 ORTHO05D003440 2.4e-10 69.7 52 57.7
SMO147G0113 Selaginella moellendorffii HOM05D001249 ORTHO05D003440 3.2e-10 69.3 154 27.3
SHI32247 Sapria himalayana HOM05D001249 ORTHO05D003440 1.2e-09 67.4 52 59.6
SHI40070 Sapria himalayana HOM05D001249 ORTHO05D003440 8.6e-08 61.2 60 51.7
SHI40100 Sapria himalayana HOM05D001249 ORTHO05D003440 8.6e-08 61.2 60 51.7
SHI51633 Sapria himalayana HOM05D001249 ORTHO05D003440 4.3e-07 58.9 54 51.9


User provided reference genes

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