Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 4.6e-236 820.8 422 100.0
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 4.8e-233 810.8 422 99.3
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.4e-227 792.7 425 97.2
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.2e-215 753.1 428 91.4
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 2.6e-202 708.8 434 85.5
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 7.5e-202 707.2 430 86.5
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 8.3e-201 703.7 432 84.5
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 3.5e-199 698.4 430 85.1
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 4.5e-199 698.0 432 84.5
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 8.0e-196 687.2 428 85.7
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 1.0e-182 643.7 437 79.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.5e-181 639.0 328 99.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 5.8e-178 627.9 325 98.5
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 6.0e-175 617.8 424 78.1
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 6.0e-175 617.8 424 78.1
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.0e-170 602.8 433 75.1
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 1.9e-165 586.3 439 72.2
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 4.3e-165 585.1 335 89.3
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 7.4e-141 504.6 431 63.8
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 2.1e-140 503.1 445 60.7
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 4.8e-140 501.9 413 63.4
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 4.8e-140 501.9 446 61.7
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 4.8e-140 501.9 453 60.7
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 2.4e-139 499.6 453 60.5
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 5.3e-139 498.4 457 60.4
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 6.9e-139 498.0 363 68.3
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 1.2e-138 497.3 453 60.3
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 1.5e-138 496.9 422 62.6
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 2.6e-138 496.1 433 62.1
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 4.5e-138 495.4 468 60.0
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 7.6e-138 494.6 433 62.6
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 1.0e-137 494.2 452 59.1
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.3e-137 493.8 431 61.9
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 1.3e-137 493.8 372 68.3
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.3e-137 493.8 423 61.9
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 1.7e-137 493.4 446 61.0
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 2.9e-137 492.7 393 65.9
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 3.8e-137 492.3 391 64.2
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 6.5e-137 491.5 447 61.1
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 8.4e-137 491.1 449 59.9
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 1.1e-136 490.7 374 67.6
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.5e-136 489.6 446 60.5
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 3.2e-136 489.2 369 65.9
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 5.5e-136 488.4 371 68.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.6e-135 486.9 432 59.7
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 2.1e-135 486.5 432 62.5
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 3.5e-135 485.7 356 69.7
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 6.0e-135 485.0 358 67.6
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.8e-134 483.4 389 63.8
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 3.0e-134 482.6 405 63.0
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 3.9e-134 482.3 359 68.5
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 5.1e-134 481.9 432 60.2
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 5.1e-134 481.9 359 67.4
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 1.1e-133 480.7 361 67.9
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 1.9e-133 479.9 437 59.3
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 1.9e-133 479.9 371 67.4
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 1.9e-133 479.9 441 59.0
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 2.5e-133 479.6 388 63.7
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 7.4e-133 478.0 368 65.8
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 1.3e-132 477.2 454 58.8
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 1.3e-132 477.2 445 58.7
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 1.3e-132 477.2 460 60.0
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 2.2e-132 476.5 452 58.6
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 2.8e-132 476.1 379 65.7
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 3.7e-132 475.7 445 58.2
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.8e-132 475.3 436 60.1
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 4.8e-132 475.3 437 60.2
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 6.3e-132 474.9 380 65.8
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 8.2e-132 474.6 386 65.0
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.1e-131 474.2 436 59.6
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 6.9e-131 471.5 381 64.3
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 6.9e-131 471.5 397 63.0
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 9.0e-131 471.1 440 58.2
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.2e-130 470.7 385 61.8
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 2.0e-130 469.9 387 63.3
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 3.4e-130 469.2 366 65.8
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 5.9e-130 468.4 440 57.7
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 1.0e-129 467.6 440 59.5
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 6.5e-129 464.9 366 65.3
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 8.5e-129 464.5 389 62.5
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 1.1e-128 464.2 404 60.6
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 1.1e-128 464.2 449 56.8
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 5.5e-128 461.8 390 62.3
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 3.6e-127 459.1 467 54.8
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 1.0e-126 457.6 433 59.6
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 2.3e-126 456.4 443 57.6
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.0e-126 456.1 433 59.1
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 6.7e-126 454.9 364 62.4
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 2.5e-125 453.0 408 59.8
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 3.3e-125 452.6 477 54.7
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.7e-124 450.3 340 66.8
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 2.2e-124 449.9 350 65.4
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 2.2e-124 449.9 458 55.0
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 3.7e-124 449.1 368 62.5
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 4.8e-124 448.7 464 54.3
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 6.3e-124 448.4 381 60.6
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 2.0e-122 443.4 438 55.7
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 2.6e-122 443.0 350 65.1
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 5.0e-121 438.7 387 61.0
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 5.7e-117 425.2 436 56.0
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 5.3e-115 418.7 238 88.7
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 2.2e-113 413.3 336 64.3
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 2.0e-109 400.2 456 52.2
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 3.7e-108 396.0 445 51.9
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 8.2e-108 394.8 306 66.7
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.4e-107 393.3 342 57.3
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 5.5e-104 382.1 283 64.7
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 1.2e-101 374.4 255 72.5
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 6.3e-100 368.6 339 55.5
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 5.9e-98 362.1 234 74.4
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 2.2e-97 360.1 287 69.0
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 1.5e-96 357.5 276 71.4
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 2.7e-95 353.2 350 54.6
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 4.0e-94 349.4 319 59.2
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 3.6e-87 326.2 315 54.0
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 8.0e-87 325.1 245 64.9
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.3e-84 317.8 225 71.1
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 8.3e-84 315.1 262 61.5
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 9.2e-83 311.6 234 74.4
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.9e-80 303.9 290 54.5
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 1.9e-80 303.9 218 69.3
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 6.8e-70 268.9 284 50.7
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 1.2e-69 268.1 279 49.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 1.1e-64 251.5 347 41.5
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 8.9e-62 241.9 312 47.4
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.4e-59 234.6 171 68.4
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 1.0e-57 228.4 189 63.5
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 4.0e-46 189.9 191 53.9
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.1e-39 167.5 195 53.8
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 6.9e-38 162.5 330 35.8
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 6.4e-28 129.4 121 57.0
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 4.6e-26 123.2 83 66.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 7.9e-26 122.5 76 72.4
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.3e-25 121.7 83 72.3
BraA03t12871Z Brassica rapa HOM05D000087 ORTHO05D014109 2.1e-23 114.4 105 66.7
BolC7t43881H Brassica oleracea HOM05D000087 ORTHO05D014109 8.2e-23 112.5 94 73.4
BcaC06g34014 Brassica carinata HOM05D000087 ORTHO05D014109 1.1e-22 112.1 87 78.2
C03p18880 Brassica napus HOM05D000087 ORTHO05D014109 3.1e-22 110.5 86 75.6
C09p73300 Brassica napus HOM05D005239 ORTHO05D014109 6.9e-22 109.4 86 75.6
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.2e-21 108.6 74 73.0
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 8.4e-20 102.4 60 80.0
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.9e-19 101.3 74 68.9
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 2.0e-13 81.3 98 43.9
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 1.6e-10 71.6 58 62.1
BolC3t12822H Brassica oleracea HOM05D005239 ORTHO05D014109 2.7e-10 70.9 53 77.4
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 1.8e-09 68.2 95 45.3
BolC9t60065H Brassica oleracea HOM05D005239 ORTHO05D014109 5.3e-06 56.6 41 75.6


User provided reference genes

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