Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.5e-176 620.9 326 100.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.1e-173 613.2 326 99.1
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 3.7e-172 608.2 320 99.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.3e-166 589.0 331 93.1
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 5.7e-165 584.3 315 95.2
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 2.6e-149 532.3 327 86.2
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 1.2e-146 523.5 326 85.9
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.8e-145 518.5 327 84.1
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 5.3e-139 498.0 328 79.3
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 9.1e-139 497.3 329 79.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 3.2e-136 488.8 330 79.4
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 3.6e-135 485.3 329 79.0
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 8.0e-119 431.0 327 68.2
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 9.2e-115 417.5 329 73.6
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 4.5e-114 415.2 334 68.3
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.9e-104 383.3 288 75.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 6.6e-97 358.2 330 57.0
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 7.3e-96 354.8 325 57.8
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 9.5e-96 354.4 330 57.0
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 6.2e-95 351.7 326 57.7
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 6.2e-95 351.7 325 57.8
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 5.2e-94 348.6 335 55.5
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 6.8e-94 348.2 327 56.6
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.2e-93 347.4 333 55.9
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.5e-93 347.1 330 56.1
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 2.0e-93 346.7 324 56.5
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 5.8e-93 345.1 325 55.4
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 7.5e-93 344.7 326 56.7
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.9e-93 344.4 329 56.5
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.9e-92 342.8 330 57.3
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.4e-92 341.7 325 54.5
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 6.4e-92 341.7 325 54.5
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-91 340.5 330 54.2
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.9e-91 340.1 314 58.3
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 2.4e-91 339.7 325 53.8
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 3.2e-91 339.3 329 57.4
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.2e-90 337.4 325 53.5
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.1e-90 336.7 313 55.3
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 3.5e-90 335.9 332 55.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.5e-90 335.9 333 54.1
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 7.8e-90 334.7 333 54.1
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 3.0e-89 332.8 327 56.6
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.0e-89 332.8 326 55.2
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 3.9e-89 332.4 324 53.4
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 6.6e-89 331.6 332 56.3
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 8.6e-89 331.3 341 53.4
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.1e-88 330.9 326 54.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.5e-88 330.5 336 54.8
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.9e-88 330.1 270 63.3
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 3.3e-88 329.3 330 53.3
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 3.3e-88 329.3 317 54.9
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 9.5e-88 327.8 335 55.2
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 9.5e-88 327.8 328 54.9
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.2e-87 327.4 246 71.5
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 3.6e-87 325.9 325 53.8
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 4.7e-87 325.5 328 53.4
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 6.2e-87 325.1 325 53.2
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 6.2e-87 325.1 328 54.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 8.1e-87 324.7 332 54.2
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 8.1e-87 324.7 341 53.7
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 8.1e-87 324.7 326 54.0
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 8.1e-87 324.7 331 53.2
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 6.8e-86 321.6 340 51.2
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.5e-85 320.5 327 50.8
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 7.6e-85 318.2 326 53.1
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 6.4e-84 315.1 261 59.0
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.1e-83 314.3 330 55.2
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 1.4e-83 313.9 327 51.7
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 2.4e-83 313.2 288 64.9
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 3.2e-83 312.8 325 51.7
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 7.1e-83 311.6 331 53.2
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.2e-82 310.8 324 49.7
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 3.5e-82 309.3 264 58.7
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.5e-82 309.3 307 55.7
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.3e-81 307.4 326 52.1
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 4.3e-80 302.4 306 53.3
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 7.3e-80 301.6 340 50.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 2.8e-79 299.7 358 49.7
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 1.1e-78 297.7 325 48.9
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 4.0e-78 295.8 331 50.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 3.4e-77 292.7 325 50.5
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 9.9e-77 291.2 329 48.0
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 6.4e-76 288.5 268 54.1
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 8.4e-76 288.1 296 52.4
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 1.1e-75 287.7 298 61.1
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 7.1e-75 285.0 305 51.8
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 9.3e-75 284.6 270 56.7
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.3e-73 280.0 297 53.2
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 6.6e-73 278.5 237 67.5
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.3e-72 276.2 294 52.4
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 5.6e-72 275.4 350 46.6
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 9.6e-72 274.6 350 47.1
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 2.8e-71 273.1 364 42.9
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.6e-71 272.7 330 48.8
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 4.8e-71 272.3 315 50.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 8.1e-71 271.6 295 49.5
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 1.1e-70 271.2 281 49.5
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.4e-70 270.8 291 56.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 2.4e-70 270.0 354 45.8
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 2.4e-70 270.0 342 47.1
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.1e-70 269.6 327 48.6
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 6.9e-70 268.5 306 51.0
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 3.4e-69 266.2 270 58.1
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.5e-69 265.8 311 48.2
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.3e-68 264.2 219 61.2
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.4e-68 261.9 330 44.8
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 3.2e-67 259.6 240 52.9
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 1.3e-65 254.2 324 43.8
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 6.7e-65 251.9 250 56.0
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.9e-64 250.4 287 49.5
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 2.8e-63 246.5 359 42.9
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 4.8e-63 245.7 272 46.7
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 6.2e-63 245.4 305 48.2
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 4.9e-60 235.7 281 45.2
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 2.4e-59 233.4 215 55.8
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.7e-58 229.9 277 49.8
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 2.3e-57 226.9 278 45.7
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.9e-57 226.1 290 44.5
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 6.5e-52 208.8 172 61.6
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.2e-50 204.5 279 43.0
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-50 204.5 240 48.8
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.2e-50 204.5 240 48.8
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 6.0e-50 202.2 156 73.1
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.3e-47 194.5 245 45.7
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 2.8e-47 193.4 332 40.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 5.0e-44 182.6 122 69.7
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 4.2e-43 179.5 148 60.1
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.8e-41 174.1 130 64.6
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 3.4e-37 159.8 248 39.1
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 4.5e-37 159.5 176 47.7
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 5.0e-36 156.0 165 50.9
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.5e-36 155.6 269 38.3
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 4.4e-32 142.9 143 49.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 4.8e-31 139.4 158 46.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.0e-28 131.7 159 49.7
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.1e-27 128.3 287 32.1
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.1e-24 118.2 205 37.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 2.2e-20 104.0 73 68.5
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 6.5e-20 102.4 78 64.1
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.8e-14 84.3 170 32.4
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.0e-12 78.6 57 70.2
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.2e-08 65.1 179 33.0
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 4.4e-08 63.2 70 45.7
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 8.3e-07 58.9 252 25.0
CARHR209430 Cardamine hirsuta HOM05D005212 ORTHO05D006353 1.4e-06 58.2 37 75.7


User provided reference genes

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