Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 3.9e-143 511.5 275 100.0
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 5.7e-134 481.1 265 97.7
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 5.7e-134 481.1 265 97.7
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 1.1e-126 456.8 265 91.3
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 3.3e-126 455.3 265 90.6
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 7.2e-121 437.6 271 88.2
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 2.2e-101 372.9 273 79.5
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 4.3e-97 358.6 273 72.9
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 1.1e-89 334.0 266 71.1
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 5.6e-89 331.6 276 68.8
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 5.6e-89 331.6 265 74.3
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 7.5e-86 321.2 273 67.8
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 2.1e-75 286.6 275 62.5
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 1.1e-49 201.1 272 51.1
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 3.4e-38 162.9 272 46.0
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 2.1e-35 153.7 267 46.8
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 2.1e-19 100.5 289 34.6
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 3.7e-16 89.7 304 32.6
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 8.2e-16 88.6 297 32.0
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 1.8e-15 87.4 289 32.9
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 3.1e-15 86.7 276 33.3
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 4.1e-15 86.3 289 30.1
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 1.6e-14 84.3 262 30.5
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 3.5e-14 83.2 242 33.9
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.0e-13 81.6 274 36.1
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 1.3e-13 81.3 290 33.1
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 2.2e-13 80.5 241 33.6
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 3.8e-13 79.7 257 31.9
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 6.5e-13 79.0 285 31.9
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-12 78.2 263 33.1
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.2e-12 76.3 244 36.5
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 4.2e-12 76.3 285 31.9
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.5e-12 75.9 240 32.5
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 5.5e-12 75.9 242 33.9
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 9.4e-12 75.1 242 33.9
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 1.6e-11 74.3 296 31.1
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 2.7e-11 73.6 241 32.4
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 3.6e-11 73.2 287 30.3
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 3.6e-11 73.2 257 31.9
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 3.6e-11 73.2 286 28.7
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.7e-11 72.8 245 32.2
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.7e-11 72.8 245 32.2
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 6.1e-11 72.4 246 28.9
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 1.0e-10 71.6 247 28.7
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.4e-10 71.2 204 31.9
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 1.8e-10 70.9 240 32.1
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 2.3e-10 70.5 239 30.5
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 3.0e-10 70.1 270 30.7
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 5.2e-10 69.3 245 32.2
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 5.2e-10 69.3 281 29.2
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 5.2e-10 69.3 246 30.5
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 8.8e-10 68.6 255 29.0
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.1e-09 68.2 280 28.9
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 3.3e-09 66.6 274 31.8
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.4e-09 66.2 283 26.5
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.4e-09 66.2 283 26.5
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 4.4e-09 66.2 249 32.9
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 4.4e-09 66.2 290 29.0
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 5.7e-09 65.9 279 29.0
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 9.7e-09 65.1 262 29.4
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 9.7e-09 65.1 284 31.7
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 9.7e-09 65.1 274 26.6
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 2.2e-08 63.9 285 26.3
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 2.8e-08 63.5 270 29.3
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 2.8e-08 63.5 208 29.8
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 4.8e-08 62.8 283 27.6
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 4.8e-08 62.8 241 29.9
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 6.3e-08 62.4 262 30.9
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 6.3e-08 62.4 276 29.3
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 8.2e-08 62.0 243 30.5
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 1.1e-07 61.6 207 31.4
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.4e-07 61.2 242 31.0
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 3.1e-07 60.1 250 28.4
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 4.1e-07 59.7 269 26.8
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 7.0e-07 58.9 267 28.5
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 1.2e-06 58.2 244 30.3
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 1.2e-06 58.2 263 29.3
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 1.2e-06 58.2 288 27.8
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 2.0e-06 57.4 222 31.5
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.0e-06 57.4 250 30.4
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 2.0e-06 57.4 250 29.2
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 2.0e-06 57.4 257 29.6
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 2.7e-06 57.0 228 29.4
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 2.7e-06 57.0 282 28.7
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 3.5e-06 56.6 267 28.1
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.5e-06 56.6 192 33.3
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 4.5e-06 56.2 259 31.3
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 4.5e-06 56.2 239 25.5
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 5.9e-06 55.8 259 27.8
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 7.7e-06 55.5 249 27.7


User provided reference genes

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