Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 1.0e-122 443.4 213 100.0
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 6.9e-103 377.5 196 92.3
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 3.4e-102 375.2 196 91.8
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 4.2e-100 368.2 196 90.3
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 4.2e-100 368.2 196 90.3
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 3.0e-98 362.1 196 88.3
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 3.9e-98 361.7 197 86.8
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 4.3e-97 358.2 196 86.2
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 3.6e-96 355.1 196 85.7
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 1.4e-95 353.2 196 89.3
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 2.4e-95 352.4 196 86.2
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 5.3e-95 351.3 196 85.7
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 2.6e-86 322.4 218 75.7
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 7.9e-83 310.8 197 73.6
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 3.4e-78 295.4 197 70.6
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.4e-78 295.4 197 70.6
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 7.6e-78 294.3 197 70.6
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.0e-77 293.9 196 70.4
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 2.9e-77 292.4 173 79.2
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 4.2e-76 288.5 197 68.5
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 5.5e-76 288.1 196 65.8
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 1.2e-75 287.0 196 66.8
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.5e-75 285.4 215 64.7
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 1.8e-74 283.1 196 65.3
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 2.3e-74 282.7 197 68.0
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 3.0e-74 282.3 195 67.2
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 3.9e-74 282.0 196 66.8
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 6.7e-74 281.2 192 68.2
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 8.7e-74 280.8 195 69.2
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 8.7e-74 280.8 192 66.7
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 1.5e-73 280.0 195 65.6
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 2.5e-73 279.3 194 67.5
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 5.7e-73 278.1 197 64.5
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 1.3e-72 276.9 197 65.5
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 4.8e-72 275.0 198 64.1
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 4.8e-72 275.0 196 66.8
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 8.2e-72 274.2 191 68.1
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 1.4e-71 273.5 195 65.1
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 1.8e-71 273.1 191 65.4
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 1.8e-71 273.1 193 67.4
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 4.1e-71 271.9 193 67.4
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 5.3e-71 271.6 196 64.8
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 6.9e-71 271.2 196 63.3
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-70 270.4 188 68.6
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.2e-70 270.4 188 68.6
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 1.2e-70 270.4 192 65.1
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 2.0e-70 269.6 196 63.3
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.6e-70 269.2 197 65.0
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 4.5e-70 268.5 189 63.0
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 4.5e-70 268.5 196 62.2
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 1.0e-69 267.3 197 66.5
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 1.3e-69 266.9 198 62.6
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.2e-69 266.2 197 64.5
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 2.2e-69 266.2 197 64.5
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 2.2e-69 266.2 196 62.2
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 2.9e-69 265.8 197 63.5
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 3.8e-69 265.4 196 61.7
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 5.0e-69 265.0 194 61.9
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 6.5e-69 264.6 192 62.5
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 8.5e-69 264.2 196 62.8
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 1.9e-68 263.1 191 62.3
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 1.2e-67 260.4 192 61.5
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 1.6e-67 260.0 196 61.7
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 3.6e-67 258.8 192 63.0
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 4.6e-67 258.5 194 62.9
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 6.1e-67 258.1 196 60.2
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 1.0e-66 257.3 182 65.4
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 1.4e-66 256.9 196 61.7
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 1.4e-66 256.9 196 61.2
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.8e-66 256.5 196 60.7
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 2.5e-65 252.7 194 58.8
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 3.3e-65 252.3 193 59.6
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 7.4e-65 251.1 193 61.1
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 7.4e-65 251.1 183 63.9
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 9.7e-65 250.8 179 65.4
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 1.7e-64 250.0 165 69.7
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 4.8e-64 248.4 193 60.1
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 6.3e-64 248.1 194 57.7
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 8.2e-64 247.7 167 67.7
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 1.8e-63 246.5 167 67.1
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 2.4e-63 246.1 193 61.1
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 1.2e-62 243.8 194 60.8
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 1.2e-62 243.8 193 57.0
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 2.6e-62 242.7 198 59.6
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 1.4e-58 230.3 161 65.8
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 3.0e-58 229.2 196 57.1
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 5.1e-58 228.4 165 61.2
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 4.4e-57 225.3 165 60.0
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 1.7e-56 223.4 152 66.4
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 2.2e-56 223.0 192 48.4
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 6.3e-56 221.5 168 63.7
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 2.6e-54 216.1 191 55.5
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.9e-53 212.6 167 60.5
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 1.1e-52 210.7 195 50.3
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 4.4e-49 198.7 196 46.4
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 4.8e-48 195.3 192 42.7
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 3.1e-47 192.6 196 51.0
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 5.3e-47 191.8 190 46.3
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.6e-43 180.3 130 64.6
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.6e-43 180.3 130 64.6
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 2.7e-43 179.5 192 48.4
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 1.2e-41 174.1 130 59.2
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 9.8e-41 171.0 196 46.4
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 4.1e-39 165.6 107 70.1
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.9e-36 156.8 199 41.2
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 4.2e-36 155.6 168 47.0
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 6.6e-29 131.7 81 72.8
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 8.6e-29 131.3 150 45.3
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 1.9e-28 130.2 92 64.1
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 6.4e-24 115.2 107 49.5
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 3.5e-22 109.4 78 65.4
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 1.0e-21 107.8 161 36.6
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 8.6e-21 104.8 88 53.4
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 1.8e-18 97.1 109 45.9
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 7.8e-14 81.6 200 30.5
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 3.0e-13 79.7 115 33.9
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 2.3e-10 70.1 63 52.4
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 3.1e-10 69.7 48 70.8
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 5.2e-10 68.9 75 45.3
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.7e-08 63.9 57 50.9
BolC8t48010H Brassica oleracea HOM05D003212 ORTHO05D039289 3.7e-08 62.8 99 42.4
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 3.7e-08 62.8 53 52.8


User provided reference genes

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