Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 1.1e-27 125.9 66 100.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 3.2e-27 124.4 66 98.5
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 1.2e-26 122.5 66 97.0
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.4e-25 119.0 66 93.9
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 4.0e-25 117.5 66 95.5
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 4.0e-25 117.5 66 95.5
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 5.2e-25 117.1 66 93.9
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 93.9
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 93.9
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 93.9
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 93.9
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 8.8e-25 116.3 66 93.9
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 1.5e-24 115.5 64 95.3
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.7e-23 112.1 58 100.0
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 2.4e-22 108.2 66 81.8
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 4.1e-22 107.5 66 87.9
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 5.4e-22 107.1 66 83.3
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 2.0e-21 105.1 66 80.3
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 4.5e-21 104.0 66 80.3
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 4.5e-21 104.0 66 81.8
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 4.5e-21 104.0 66 81.8
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.7e-20 102.1 66 80.3
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 84.1
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 2.9e-20 101.3 63 84.1
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 3.8e-20 100.9 66 78.8
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 6.6e-20 100.1 64 81.2
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 8.6e-20 99.8 63 82.5
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 8.6e-20 99.8 66 80.3
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 1.1e-19 99.4 50 100.0
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.1e-19 99.4 66 78.8
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.1e-19 99.4 63 82.5
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.5e-19 99.0 64 78.1
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 2.5e-19 98.2 55 94.5
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.5e-19 98.2 66 78.8
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.5e-19 98.2 66 78.8
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 3.3e-19 97.8 63 81.0
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 3.3e-19 97.8 66 77.3
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 4.2e-19 97.4 66 75.8
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 5.5e-19 97.1 63 77.8
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 5.5e-19 97.1 66 75.8
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 7.2e-19 96.7 63 79.4
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 7.2e-19 96.7 64 75.0
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.2e-18 95.9 66 75.8
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 1.2e-18 95.9 68 75.0
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.6e-18 95.5 64 76.6
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 2.1e-18 95.1 64 75.0
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 2.1e-18 95.1 66 75.8
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 2.8e-18 94.7 114 55.3
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 2.8e-18 94.7 66 74.2
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 3.6e-18 94.4 64 75.0
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 3.6e-18 94.4 68 75.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.7e-18 94.0 66 72.7
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 4.7e-18 94.0 63 76.2
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 6.1e-18 93.6 53 88.7
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 6.1e-18 93.6 66 74.2
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 8.0e-18 93.2 66 71.2
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 8.0e-18 93.2 66 71.2
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 8.0e-18 93.2 66 72.7
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 1.0e-17 92.8 63 74.6
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 1.0e-17 92.8 66 72.7
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.0e-17 92.8 66 72.7
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 1.4e-17 92.4 63 73.0
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 1.8e-17 92.0 63 74.6
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 3.0e-17 91.3 61 77.0
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 3.0e-17 91.3 64 70.3
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 4.0e-17 90.9 66 75.8
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 5.2e-17 90.5 64 70.3
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 5.2e-17 90.5 58 75.9
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 1.5e-16 89.0 63 73.0
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 2.6e-16 88.2 63 73.0
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 4.4e-16 87.4 63 69.8
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 4.4e-16 87.4 63 69.8
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 5.7e-16 87.0 64 75.0
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 5.7e-16 87.0 63 69.8
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 7.5e-16 86.7 63 69.8
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 1.3e-15 85.9 66 66.7
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 1.7e-15 85.5 66 71.2
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.7e-15 85.5 81 55.6
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 2.2e-15 85.1 53 83.0
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 2.2e-15 85.1 57 71.9
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 2.8e-15 84.7 55 72.7
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 2.8e-15 84.7 63 66.7
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 3.7e-15 84.3 61 70.5
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 3.7e-15 84.3 60 71.7
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 4.9e-15 84.0 57 73.7
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 6.3e-15 83.6 56 76.8
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 1.1e-14 82.8 57 71.9
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 1.1e-14 82.8 55 80.0
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 1.8e-14 82.0 63 65.1
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 2.4e-14 81.6 55 78.2
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 2.4e-14 81.6 58 72.4
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 3.1e-14 81.3 63 68.3
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 4.1e-14 80.9 53 81.1
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 4.1e-14 80.9 52 76.9
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.2e-13 79.3 60 70.0
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 1.2e-13 79.3 82 57.3
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 2.0e-13 78.6 55 72.7
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 3.5e-13 77.8 57 68.4
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 7.8e-13 76.6 63 63.5
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 1.7e-12 75.5 51 78.4
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 6.6e-12 73.6 45 84.4
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 4.3e-11 70.9 52 69.2
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 4.3e-11 70.9 56 64.3
BcaC03g16694 Brassica carinata HOM05D007265 ORTHO05D009118 1.5e-08 62.4 42 83.3
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.2e-07 58.5 37 75.7
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 2.2e-07 58.5 37 75.7
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 2.2e-07 58.5 62 56.5
TAR375G0162 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.4e-06 55.1 45 73.3


User provided reference genes

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