Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.4e-136 488.8 238 100.0
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 5.8e-135 484.2 237 99.2
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 3.3e-130 468.4 236 95.8
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 6.9e-128 460.7 240 94.2
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 2.6e-127 458.8 240 93.8
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 5.8e-127 457.6 239 93.3
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 1.3e-126 456.4 240 93.3
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.9e-126 455.3 240 92.9
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 6.4e-126 454.1 240 92.9
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.3e-123 445.7 238 91.2
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 3.9e-123 444.9 232 92.7
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 3.9e-123 444.9 238 90.8
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 5.1e-123 444.5 238 90.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 9.6e-122 440.3 238 89.9
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 1.0e-118 430.3 232 89.7
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 1.0e-118 430.3 232 89.7
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 3.5e-116 421.8 238 86.1
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 1.2e-100 370.2 212 85.8
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 4.8e-97 358.2 238 71.8
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 7.2e-93 344.4 238 70.2
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 9.4e-93 344.0 238 68.9
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 1.2e-92 343.6 230 70.0
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 1.2e-92 343.6 230 70.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.2e-92 343.6 230 70.4
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 4.7e-92 341.7 219 71.2
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 8.0e-92 340.9 230 68.3
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 3.0e-91 339.0 230 69.1
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 3.0e-91 339.0 219 71.7
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 3.0e-91 339.0 230 69.6
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.9e-91 338.6 230 68.7
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 5.2e-91 338.2 230 70.4
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 5.2e-91 338.2 230 68.7
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 5.2e-91 338.2 219 73.5
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.7e-91 337.8 230 69.1
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 8.8e-91 337.4 230 70.0
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 8.8e-91 337.4 235 68.5
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 1.1e-90 337.0 230 70.0
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 1.1e-90 337.0 238 69.3
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 1.5e-90 336.7 219 71.7
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 2.0e-90 336.3 230 68.7
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.3e-90 335.5 246 67.5
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 5.7e-90 334.7 239 68.6
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 5.7e-90 334.7 225 68.9
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.7e-90 334.7 219 69.9
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 5.7e-90 334.7 235 68.5
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 5.7e-90 334.7 222 68.9
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 1.3e-89 333.6 219 71.2
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 1.3e-89 333.6 234 67.5
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 2.8e-89 332.4 219 69.9
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.8e-89 332.4 230 70.0
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.7e-89 332.0 219 69.9
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 3.7e-89 332.0 230 69.1
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.3e-89 331.3 230 69.6
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 8.2e-89 330.9 219 69.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 8.2e-89 330.9 219 69.9
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.1e-88 330.5 239 67.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 1.4e-88 330.1 219 69.9
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.8e-88 329.7 219 70.3
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 4.1e-88 328.6 230 68.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 4.1e-88 328.6 219 69.9
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 5.3e-88 328.2 235 65.1
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 2.0e-87 326.2 230 67.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 2.0e-87 326.2 231 66.7
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 2.0e-87 326.2 235 66.4
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.9e-87 324.7 219 68.9
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 5.9e-87 324.7 230 67.8
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.9e-87 324.7 219 69.4
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.3e-86 323.6 260 62.3
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.7e-86 323.2 230 67.4
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 2.9e-86 322.4 231 64.9
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 3.8e-86 322.0 219 67.6
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.0e-86 321.6 238 63.0
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 8.5e-86 320.9 230 67.4
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 1.5e-85 320.1 223 66.8
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 1.5e-85 320.1 215 68.4
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 1.9e-85 319.7 238 64.7
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 2.5e-85 319.3 238 63.4
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 4.2e-85 318.5 234 63.2
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 5.5e-85 318.2 234 63.7
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 5.5e-85 318.2 238 63.0
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 7.2e-85 317.8 233 64.4
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 6.1e-84 314.7 222 66.2
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 1.0e-83 313.9 240 65.8
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 1.0e-83 313.9 235 65.5
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 1.8e-83 313.2 230 65.7
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 1.8e-83 313.2 222 66.2
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 4.0e-83 312.0 215 67.4
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 4.0e-83 312.0 215 67.4
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 6.7e-83 311.2 232 63.8
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 8.8e-83 310.8 215 66.0
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-82 310.5 224 69.2
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 1.2e-82 310.5 224 69.2
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 1.2e-82 310.5 214 67.8
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.3e-82 308.9 215 67.4
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 4.4e-82 308.5 228 66.2
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 7.5e-82 307.8 217 66.8
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 7.5e-82 307.8 215 65.1
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-81 307.0 215 66.5
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 1.7e-81 306.6 244 62.3
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 3.7e-81 305.4 230 65.2
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 3.7e-81 305.4 239 62.8
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.1e-80 303.9 223 63.7
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 9.1e-80 300.8 215 65.1
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.0e-79 299.7 239 61.5
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 2.0e-79 299.7 239 61.5
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 2.7e-79 299.3 237 63.3
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 3.5e-79 298.9 233 62.7
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 7.7e-79 297.7 215 64.7
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 7.7e-79 297.7 240 60.8
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 7.7e-79 297.7 224 62.5
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-78 297.0 223 66.8
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 2.2e-78 296.2 220 61.8
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 1.1e-77 293.9 223 62.3
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.9e-77 293.1 230 63.9
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 9.4e-77 290.8 245 58.4
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 9.4e-77 290.8 214 65.0
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.6e-76 290.0 238 61.3
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 2.1e-76 289.7 230 62.2
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 4.0e-75 285.4 272 53.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 1.5e-74 283.5 215 61.9
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 1.7e-73 280.0 237 58.6
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 6.3e-73 278.1 241 59.3
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.2e-71 273.9 190 74.7
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.1e-69 267.3 171 71.9
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 1.6e-68 263.5 183 69.4
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.1e-68 263.1 230 59.1
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 6.1e-68 261.5 181 66.3
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 6.8e-67 258.1 237 56.5
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.3e-65 251.5 223 57.4
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 4.1e-64 248.8 247 51.0
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 1.7e-62 243.4 230 54.3
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 1.8e-59 233.4 163 66.3
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 5.8e-58 228.4 159 65.4
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 9.8e-58 227.6 160 65.0
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 3.2e-56 222.6 194 58.2
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 8.6e-54 214.5 225 48.4
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 4.7e-52 208.8 178 59.6
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 8.9e-51 204.5 215 47.4
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 2.0e-50 203.4 152 69.7
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.6e-50 203.0 188 56.9
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.7e-47 193.0 213 46.0
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 1.3e-46 190.7 213 45.5
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 1.1e-43 181.0 142 64.8
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 5.2e-43 178.7 120 64.2
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 8.3e-41 171.4 133 58.6
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 2.6e-34 149.8 220 39.1
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 2.9e-33 146.4 90 71.1
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 1.0e-30 137.9 99 61.6
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 8.7e-30 134.8 90 74.4
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 2.5e-29 133.3 223 36.8
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 7.3e-29 131.7 103 66.0
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 3.4e-26 122.9 158 42.4
Aa31LG5G23500 Aethionema arabicum HOM05D004213 ORTHO05D005091 5.4e-24 115.5 79 77.2
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 6.0e-23 112.1 92 58.7
MBI16_g18199_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 2.5e-21 106.7 105 55.2
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 8.1e-20 101.7 202 28.7
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 1.3e-17 94.4 67 62.7
FvH4_7g22001 Fragaria vesca HOM05D004065 ORTHO05D004806 4.9e-17 92.4 56 76.8
FAN01G2126 Fragaria x ananassa HOM05D004065 ORTHO05D004806 4.9e-17 92.4 56 76.8
FAN06G3959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.4e-16 90.1 61 68.9
FAN01G2862 Fragaria x ananassa HOM05D004213 ORTHO05D005091 9.3e-16 88.2 61 67.2
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.5e-15 86.3 106 40.6
CAN.G467.8 Capsicum annuum HOM05D004213 ORTHO05D005091 3.3e-13 79.7 51 70.6
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 4.5e-10 69.3 152 29.6
FAN03G3471 Fragaria x ananassa HOM05D004213 ORTHO05D005091 1.7e-09 67.4 49 67.3
Actinidia10076 Actinidia chinensis HOM05D006382 ORTHO05D008938 1.8e-06 57.4 38 76.3
BraA05t19164Z Brassica rapa HOM05D004213 ORTHO05D107977 6.7e-06 55.5 27 88.9
COL.COLO4_35570 Corchorus olitorius HOM05D002230 ORTHO05D002441 6.7e-06 55.5 44 63.6


User provided reference genes

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