Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07019 Brassica carinata HOM05D000026 ORTHO05D008596 1.2e-114 416.4 199 100.0
C04p72250 Brassica napus HOM05D000026 ORTHO05D008596 6.2e-114 414.1 199 99.5
A04p34480 Brassica napus HOM05D000026 ORTHO05D008596 1.0e-108 396.7 199 95.0
BraA04t18906Z Brassica rapa HOM05D000026 ORTHO05D008596 1.0e-108 396.7 199 95.0
BcaC02g07042 Brassica carinata HOM05D000026 ORTHO05D008596 1.9e-102 375.9 196 91.8
Carub.0004s2930 Capsella rubella HOM05D000026 ORTHO05D008596 6.6e-100 367.5 199 85.9
Thhalv10001639m.g Eutrema salsugineum HOM05D000026 ORTHO05D008596 1.3e-98 363.2 199 83.9
Sp4g28630 Schrenkiella parvula HOM05D000026 ORTHO05D008596 3.6e-98 361.7 195 86.2
AT2G46580 Arabidopsis thaliana HOM05D000026 ORTHO05D008596 1.8e-97 359.4 199 83.9
BolC4t28712H Brassica oleracea HOM05D000026 ORTHO05D008596 2.4e-97 359.0 221 82.4
CARHR141930 Cardamine hirsuta HOM05D000026 ORTHO05D008596 9.9e-96 353.6 199 82.9
AL4G46010 Arabidopsis lyrata HOM05D000026 ORTHO05D008596 1.1e-94 350.1 199 82.4
BcaNung06661 Brassica carinata HOM05D000026 ORTHO05D008596 1.8e-89 332.8 205 82.0
THA.LOC104827623 Tarenaya hassleriana HOM05D000026 ORTHO05D008596 2.3e-84 315.8 200 71.0
FAN06G2200 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.8e-79 298.5 199 68.3
FvH4_7g16970 Fragaria vesca HOM05D000026 ORTHO05D008596 1.4e-78 296.6 197 68.5
FAN06G4713 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.4e-78 296.6 197 68.5
FAN10G3002 Fragaria x ananassa HOM05D000026 ORTHO05D008596 3.2e-78 295.4 197 68.5
Atru.chr5.703 Acer truncatum HOM05D000026 ORTHO05D008596 2.1e-77 292.7 199 64.8
RcHm_v2.0_Chr1g0360221 Rosa chinensis HOM05D000026 ORTHO05D008596 2.3e-76 289.3 197 66.5
Aa31LG1G27980 Aethionema arabicum HOM05D000026 ORTHO05D008596 3.9e-76 288.5 170 78.2
Thecc.01G339500 Theobroma cacao HOM05D000026 ORTHO05D008596 3.9e-76 288.5 199 64.8
Cpa.g.sc96.56 Carica papaya HOM05D000026 ORTHO05D008596 6.7e-76 287.7 197 66.5
FAN01G2684 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.5e-75 286.6 215 62.8
MBI04_g28825_MAGBIO Magnolia biondii HOM05D000026 ORTHO05D008596 2.5e-75 285.8 197 64.5
Manes.05G020900 Manihot esculenta HOM05D000026 ORTHO05D008596 2.5e-75 285.8 199 65.3
PGR031G0964 Punica granatum HOM05D000026 ORTHO05D008596 2.5e-75 285.8 197 66.0
CANSAT56G3067 Cannabis sativa HOM05D000026 ORTHO05D008596 3.3e-75 285.4 199 64.8
Prupe.2G192000 Prunus persica HOM05D000026 ORTHO05D008596 4.3e-75 285.0 197 65.0
Cc02_g39620 Coffea canephora HOM05D000026 ORTHO05D008596 9.6e-75 283.9 197 63.5
Cfa003780 Carpinus fangiana HOM05D000026 ORTHO05D008596 2.1e-74 282.7 199 63.8
MD01G1084300 Malus domestica HOM05D000026 ORTHO05D008596 6.3e-74 281.2 197 64.5
Potri.014G100700 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.1e-73 280.4 199 66.3
Potri.002G173800 Populus trichocarpa HOM05D000026 ORTHO05D008596 1.4e-73 280.0 200 64.5
Gohir.A07G136500 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.4e-73 279.3 200 63.5
TWI23G0686 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.4e-73 279.3 200 65.5
CSS0047897 Camellia sinensis var. sinensis HOM05D000026 ORTHO05D008596 3.1e-73 278.9 199 63.3
QL08p045855 Quercus lobata HOM05D000026 ORTHO05D008596 5.3e-73 278.1 199 63.3
Aqoxy5G04296 Aquilegia oxysepala HOM05D000026 ORTHO05D008596 6.9e-73 277.7 200 65.5
Gohir.D07G141900 Gossypium hirsutum HOM05D000026 ORTHO05D008596 2.0e-72 276.2 200 63.0
Gorai.001G153500 Gossypium raimondii HOM05D000026 ORTHO05D008596 2.0e-72 276.2 200 63.0
Hma1.2p1_0101F.1_g049143 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.0e-72 276.2 191 68.1
Hma1.2p1_2584F.1_g324880 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 2.0e-72 276.2 191 68.1
TWI59G0194 Tripterygium wilfordii HOM05D000026 ORTHO05D008596 2.6e-72 275.8 200 65.0
arahy.Tifrunner.gnm1.ann1.HRQ3AE Arachis hypogaea HOM05D000026 ORTHO05D008596 3.4e-72 275.4 196 63.3
EL10Ac1g00239 Beta vulgaris HOM05D000026 ORTHO05D008596 5.9e-72 274.6 193 64.2
GSVIVG01027181001 Vitis vinifera HOM05D000026 ORTHO05D008596 5.9e-72 274.6 199 64.3
Lsat_1_v5_gn_4_30860 Lactuca sativa HOM05D000026 ORTHO05D008596 7.6e-72 274.2 200 63.0
Lj7A496T103 Lonicera japonica HOM05D000026 ORTHO05D008596 1.3e-71 273.5 196 64.3
Hund27184 Selenicereus undatus HOM05D000026 ORTHO05D008596 1.7e-71 273.1 199 62.8
Lj3g0003520 Lotus japonicus HOM05D000026 ORTHO05D008596 3.8e-71 271.9 195 62.1
HanXRQChr16g0524761 Helianthus annuus HOM05D000026 ORTHO05D008596 5.0e-71 271.6 200 63.5
TAR629G1880 Trochodendron aralioides HOM05D000026 ORTHO05D008596 6.5e-71 271.2 199 60.3
vmacro12664 Vaccinium macrocarpon HOM05D000026 ORTHO05D008596 8.5e-71 270.8 200 65.5
MSTRG.28272 Avicennia marina HOM05D000026 ORTHO05D008596 1.1e-70 270.4 197 62.4
VMungo0331G1134 Vigna mungo HOM05D000026 ORTHO05D008596 1.4e-70 270.0 199 61.3
arahy.Tifrunner.gnm1.ann1.CN1679 Arachis hypogaea HOM05D000026 ORTHO05D008596 2.5e-70 269.2 196 62.2
DCAR_006978 Daucus carota HOM05D000026 ORTHO05D008596 2.5e-70 269.2 197 62.4
SGA_v2.0_scaffold232G43545 Striga asiatica HOM05D000026 ORTHO05D008596 4.2e-70 268.5 197 61.9
Ca_23515_v3 Cicer arietinum L. HOM05D000026 ORTHO05D008596 9.3e-70 267.3 197 60.9
Ciclev10022329m.g Citrus clementina HOM05D000026 ORTHO05D008596 9.3e-70 267.3 199 61.8
Phvul.010G115400 Phaseolus vulgaris HOM05D000026 ORTHO05D008596 9.3e-70 267.3 199 62.3
TPR.G20231 Trifolium pratense HOM05D000026 ORTHO05D008596 3.6e-69 265.4 197 61.4
Lalb_Chr10g0100681 Lupinus albus HOM05D000026 ORTHO05D008596 1.0e-68 263.8 199 61.3
PSO063G7217 Papaver somniferum HOM05D000026 ORTHO05D008596 1.0e-68 263.8 199 59.3
Nitab4.5_0000258g0260 Nicotiana tabacum HOM05D000026 ORTHO05D008596 1.3e-68 263.5 197 61.9
Medtr8g027365 Medicago truncatula HOM05D000026 ORTHO05D008596 2.3e-68 262.7 199 61.3
Glyma.16G023100 Glycine max HOM05D000026 ORTHO05D008596 3.0e-68 262.3 199 61.8
Eucgr.D02387 Eucalyptus grandis HOM05D000026 ORTHO05D008596 5.1e-68 261.5 197 60.9
MELO3C006011.2 Cucumis melo HOM05D000026 ORTHO05D008596 3.7e-66 255.4 199 59.8
unitig_21.g20560 Utricularia gibba HOM05D000026 ORTHO05D008596 1.4e-65 253.4 200 58.5
ECA234G0680 Erigeron canadensis HOM05D000026 ORTHO05D008596 2.4e-65 252.7 201 59.7
Os03g0115500 Oryza sativa ssp. japonica HOM05D000026 ORTHO05D008596 3.1e-65 252.3 195 56.9
CsaV3_3G007930 Cucumis sativus L. HOM05D000026 ORTHO05D008596 4.1e-65 251.9 197 57.4
Migut.N01531 Erythranthe guttata HOM05D000026 ORTHO05D008596 9.1e-65 250.8 197 60.4
FAN10G2309 Fragaria x ananassa HOM05D000026 ORTHO05D000127 1.5e-64 250.0 169 66.9
CAN.G360.5 Capsicum annuum HOM05D000026 ORTHO05D008596 2.6e-64 249.2 179 63.7
Zm00001eb001050 Zea mays HOM05D000026 ORTHO05D008596 4.5e-64 248.4 195 57.4
Solyc05g050530.3 Solanum lycopersicum HOM05D000026 ORTHO05D008596 1.0e-63 247.3 181 62.4
CDE02G1978 Ceratophyllum demersum HOM05D000026 ORTHO05D008596 2.9e-63 245.7 196 58.7
Sopen05g028950 Solanum pennellii HOM05D000026 ORTHO05D008596 3.8e-63 245.4 179 62.6
COL.COLO4_06235 Corchorus olitorius HOM05D000026 ORTHO05D008596 5.0e-63 245.0 166 65.1
Duzib133G0719 Durio zibethinus HOM05D000026 ORTHO05D008596 8.5e-63 244.2 166 64.5
Sed0016971 Sechium edule HOM05D000026 ORTHO05D008596 1.1e-62 243.8 196 56.1
CiPaw.01G078200 Carya illinoinensis HOM05D000026 ORTHO05D008596 1.3e-58 230.3 167 59.3
Nitab4.5_0003865g0100 Nicotiana tabacum HOM05D000026 ORTHO05D008596 2.2e-58 229.6 197 56.3
SEGI_21315 Sequoiadendron giganteum HOM05D000026 ORTHO05D008596 2.2e-58 229.6 196 49.0
AUR62004514 Chenopodium quinoa HOM05D000026 ORTHO05D008596 4.1e-57 225.3 169 57.4
PGSC0003DMG400007008 Solanum tuberosum HOM05D000026 ORTHO05D008596 6.9e-57 224.6 163 62.6
Dinv32607 Davidia involucrata HOM05D000026 ORTHO05D008596 9.1e-57 224.2 156 63.5
PSO170G4931 Papaver somniferum HOM05D000026 ORTHO05D008596 3.2e-54 215.7 199 52.8
FAN03G0355 Fragaria x ananassa HOM05D000026 ORTHO05D008596 1.6e-53 213.4 166 60.8
Actinidia28110 Actinidia chinensis HOM05D000026 ORTHO05D008596 6.1e-53 211.5 166 58.4
Mapoly0085s0082 Marchantia polymorpha HOM05D000026 ORTHO05D008596 1.0e-52 210.7 198 50.0
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 3.0e-52 209.1 200 48.0
SMO119G0236 Selaginella moellendorffii HOM05D000026 ORTHO05D008596 4.8e-50 201.8 199 48.2
Pp3c7_90 Physcomitrium patens HOM05D000026 ORTHO05D008596 7.0e-49 198.0 196 41.3
Rhsim01G0174600 Rhododendron simsii HOM05D000026 ORTHO05D008596 1.0e-47 194.1 199 50.3
Hma1.2p1_0101F.1_g049146 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.2e-46 188.7 133 64.7
Hma1.2p1_2584F.1_g324890 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 4.2e-46 188.7 133 64.7
Nn1g00327 Nelumbo nucifera HOM05D000026 ORTHO05D008596 6.7e-44 181.4 196 47.4
Oeu004961.1 Olea europaea HOM05D000026 ORTHO05D008596 4.8e-42 175.3 132 57.6
Sc01g0002470 Simmondsia chinensis HOM05D000026 ORTHO05D008596 2.0e-40 169.9 108 72.2
Peaxi162Scf00716g00425 Petunia axillaris HOM05D000026 ORTHO05D008596 1.3e-39 167.2 198 45.5
Sabra14G0074100 Salix brachista HOM05D000026 ORTHO05D008596 2.7e-37 159.5 173 45.7
CBR_g3312 Chara braunii HOM05D000026 ORTHO05D008596 1.2e-35 154.1 218 38.5
ClCG05G000710 Citrullus lanatus HOM05D000026 ORTHO05D008596 1.6e-32 143.7 272 34.6
Hma1.2p1_0101F.1_g049160 Hydrangea macrophylla HOM05D000026 ORTHO05D008596 6.1e-29 131.7 92 64.1
Actinidia28403 Actinidia chinensis HOM05D000026 ORTHO05D008596 2.0e-27 126.7 81 69.1
HPP92_015098 Vanilla planifolia HOM05D000026 ORTHO05D008596 5.4e-25 118.6 111 49.5
MCO05G651 Micromonas commoda HOM05D000026 ORTHO05D008596 5.0e-23 112.1 184 35.9
ATR0757G161 Amborella trichopoda HOM05D000026 ORTHO05D008596 1.9e-22 110.2 77 62.3
AUR62022739 Chenopodium quinoa HOM05D000026 ORTHO05D008596 7.3e-22 108.2 92 51.1
Sabra02G0139600 Salix brachista HOM05D000026 ORTHO05D008596 8.3e-18 94.7 105 44.8
PRCOL_00000497 Prasinoderma coloniale HOM05D000026 ORTHO05D008596 4.6e-16 89.0 231 29.9
Cre02.g095100 Chlamydomonas reinhardtii HOM05D000026 ORTHO05D008596 3.9e-15 85.9 142 31.7
Haze_15680 Corylus avellana HOM05D000026 ORTHO05D008596 1.2e-11 74.3 47 72.3
TAR636G3419 Trochodendron aralioides HOM05D000026 ORTHO05D008596 2.2e-10 70.1 63 50.8
Zm00001eb244850 Zea mays HOM05D017471 ORTHO05D012887 1.9e-09 67.0 75 42.7
Hund19453 Selenicereus undatus HOM05D004066 ORTHO05D008596 4.6e-08 62.4 53 52.8
Zm00001eb123990 Zea mays HOM05D000026 ORTHO05D012887 1.7e-07 60.5 57 47.4
BolC8t48010H Brassica oleracea HOM05D003212 ORTHO05D039289 2.3e-07 60.1 42 64.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 3.3e-06 56.2 182 25.8
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 5.6e-06 55.5 182 26.4
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 5.6e-06 55.5 84 34.5
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 5.6e-06 55.5 182 25.3


User provided reference genes

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