Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07016 Brassica carinata HOM05D007265 ORTHO05D009118 1.5e-23 112.1 58 100.0
BcaC02g07039 Brassica carinata HOM05D007265 ORTHO05D009118 1.5e-23 112.1 58 100.0
A04p34450 Brassica napus HOM05D007265 ORTHO05D009118 4.3e-23 110.5 58 98.3
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 1.6e-22 108.6 58 98.3
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 1.6e-22 108.6 58 98.3
BraA04t18903Z Brassica rapa HOM05D007265 ORTHO05D009118 1.6e-22 108.6 58 96.6
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 1.6e-22 108.6 58 98.3
BcaC02g12671 Brassica carinata HOM05D007265 ORTHO05D009118 3.6e-22 107.5 58 96.6
BcaC02g12679 Brassica carinata HOM05D007265 ORTHO05D009118 3.6e-22 107.5 58 96.6
C04p01380 Brassica napus HOM05D007265 ORTHO05D009118 3.6e-22 107.5 58 96.6
BolC4t21791H Brassica oleracea HOM05D007265 ORTHO05D009118 3.6e-22 107.5 58 96.6
BraA05t19124Z Brassica rapa HOM05D007265 ORTHO05D009118 3.6e-22 107.5 58 96.6
Carub.0004s2926 Capsella rubella HOM05D007265 ORTHO05D009118 6.2e-22 106.7 56 98.2
BolC4t28709H Brassica oleracea HOM05D007265 ORTHO05D009118 1.8e-21 105.1 58 93.1
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.4e-20 100.9 58 86.2
CARHR141880 Cardamine hirsuta HOM05D007265 ORTHO05D009118 1.7e-19 98.6 58 89.7
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 2.9e-19 97.8 58 84.5
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 7.0e-18 93.2 58 81.0
BcaNung06658 Brassica carinata HOM05D007265 ORTHO05D009118 2.0e-17 91.7 46 100.0
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 2.0e-17 91.7 58 79.3
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 2.7e-17 91.3 56 82.1
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 2.7e-17 91.3 58 79.3
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 2.7e-17 91.3 58 81.0
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 4.6e-17 90.5 55 83.6
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 4.6e-17 90.5 55 83.6
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 6.0e-17 90.1 58 81.0
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 6.0e-17 90.1 58 79.3
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 6.0e-17 90.1 58 79.3
A05p01230 Brassica napus HOM05D007265 ORTHO05D009118 7.8e-17 89.7 47 97.9
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 7.8e-17 89.7 56 78.6
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.0e-16 89.4 55 80.0
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 1.0e-16 89.4 56 78.6
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 1.3e-16 89.0 55 81.8
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 1.3e-16 89.0 58 77.6
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 1.7e-16 88.6 55 81.8
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 1.7e-16 88.6 56 78.6
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 1.7e-16 88.6 58 77.6
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.7e-16 88.6 58 79.3
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.7e-16 88.6 58 79.3
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 1.7e-16 88.6 55 81.8
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 2.3e-16 88.2 58 77.6
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 2.3e-16 88.2 58 77.6
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.3e-16 88.2 58 77.6
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.3e-16 88.2 58 77.6
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 3.0e-16 87.8 56 78.6
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 3.9e-16 87.4 58 75.9
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 5.0e-16 87.0 60 75.0
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 5.0e-16 87.0 58 75.9
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 6.6e-16 86.7 58 74.1
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 6.6e-16 86.7 56 76.8
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 8.6e-16 86.3 58 74.1
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 1.1e-15 85.9 58 75.9
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 1.1e-15 85.9 106 53.8
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 1.5e-15 85.5 58 72.4
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 1.5e-15 85.5 60 75.0
Aa31LG1G27910 Aethionema arabicum HOM05D007265 ORTHO05D009118 1.9e-15 85.1 45 93.3
MELO3C022263.2 Cucumis melo HOM05D007265 ORTHO05D009118 1.9e-15 85.1 55 76.4
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.9e-15 85.1 58 74.1
TWI59G0786 Tripterygium wilfordii HOM05D007265 ORTHO05D009118 1.9e-15 85.1 55 76.4
CsaV3_6G008500 Cucumis sativus L. HOM05D007265 ORTHO05D009118 3.3e-15 84.3 55 76.4
Migut.N01534 Erythranthe guttata HOM05D007265 ORTHO05D009118 5.6e-15 83.6 58 72.4
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.3e-15 83.2 58 72.4
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 7.3e-15 83.2 55 72.7
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 2.1e-14 81.6 56 69.6
Manes.01G244801 Manihot esculenta HOM05D007265 ORTHO05D009118 2.8e-14 81.3 58 75.9
Sed0002056 Sechium edule HOM05D007265 ORTHO05D009118 2.8e-14 81.3 55 74.5
Aqoxy5G04249 Aquilegia oxysepala HOM05D007265 ORTHO05D009118 3.6e-14 80.9 53 75.5
Lsat_1_v5_gn_4_39661 Lactuca sativa HOM05D007265 ORTHO05D009118 4.7e-14 80.5 50 76.0
CANSAT56G3703 Cannabis sativa HOM05D007265 ORTHO05D009118 8.1e-14 79.7 55 74.5
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 8.1e-14 79.7 56 67.9
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 1.4e-13 79.0 55 70.9
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 1.4e-13 79.0 55 70.9
Manes.05G021500 Manihot esculenta HOM05D007265 ORTHO05D009118 3.1e-13 77.8 58 72.4
Nn3g18955 Nelumbo nucifera HOM05D007265 ORTHO05D009118 3.1e-13 77.8 56 75.0
Os05g0542100 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 3.1e-13 77.8 58 67.2
Sc01g0002550 Simmondsia chinensis HOM05D007265 ORTHO05D009118 3.1e-13 77.8 49 73.5
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 4.0e-13 77.4 55 69.1
EL10Ac1g00247 Beta vulgaris HOM05D007265 ORTHO05D009118 5.2e-13 77.0 47 74.5
Medtr7g117700 Medicago truncatula HOM05D007265 ORTHO05D009118 5.2e-13 77.0 55 69.1
arahy.Tifrunner.gnm1.ann1.4N8QKH Arachis hypogaea HOM05D007265 ORTHO05D009118 6.8e-13 76.6 53 71.7
ClCG06G002640 Citrullus lanatus HOM05D007265 ORTHO05D009118 1.2e-12 75.9 48 79.2
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 1.2e-12 75.9 73 53.4
Ca_09518_v3 Cicer arietinum L. HOM05D007265 ORTHO05D009118 1.5e-12 75.5 55 67.3
COL.COLO4_06226 Corchorus olitorius HOM05D007265 ORTHO05D009118 1.5e-12 75.5 45 84.4
Lalb_Chr18g0044541 Lupinus albus HOM05D007265 ORTHO05D009118 1.5e-12 75.5 55 70.9
Hund27188 Selenicereus undatus HOM05D007265 ORTHO05D009118 2.0e-12 75.1 49 73.5
arahy.Tifrunner.gnm1.ann1.PH1UFL Arachis hypogaea HOM05D007265 ORTHO05D009118 2.6e-12 74.7 52 71.2
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 3.4e-12 74.3 55 65.5
Oeu007878.1 Olea europaea HOM05D007265 ORTHO05D009118 3.4e-12 74.3 47 80.9
SalBow5G3999 Salvia bowleyana HOM05D002476 ORTHO05D002652 3.4e-12 74.3 47 80.9
Lsat_1_v5_gn_3_126500 Lactuca sativa HOM05D007265 ORTHO05D009118 5.8e-12 73.6 49 71.4
Rhsim01G0174400 Rhododendron simsii HOM05D007265 ORTHO05D009118 5.8e-12 73.6 79 55.7
MSTRG.17355 Avicennia marina HOM05D007265 ORTHO05D009118 7.5e-12 73.2 45 84.4
MBI07_g24775_MAGBIO Magnolia biondii HOM05D007265 ORTHO05D009118 1.3e-11 72.4 52 73.1
Lalb_Chr15g0076341 Lupinus albus HOM05D007265 ORTHO05D009118 1.7e-11 72.0 55 67.3
vmacro13170 Vaccinium macrocarpon HOM05D007265 ORTHO05D009118 1.7e-11 72.0 50 72.0
AUR62004508 Chenopodium quinoa HOM05D007265 ORTHO05D009118 2.2e-11 71.6 44 77.3
Ah.05g179400 Amaranthus hybridus HOM05D007265 ORTHO05D009118 6.4e-11 70.1 49 69.4
Gorai.008G126400 Gossypium raimondii HOM05D007265 ORTHO05D009118 1.1e-10 69.3 47 72.3
Psat3g001880 Pisum sativum HOM05D007265 ORTHO05D009118 1.6e-09 65.5 47 70.2
Os01g0705500 Oryza sativa ssp. japonica HOM05D007265 ORTHO05D009118 2.7e-09 64.7 43 79.1
Gorai.007G109700 Gossypium raimondii HOM05D007265 ORTHO05D009118 3.5e-09 64.3 37 86.5
Psat3g174080 Pisum sativum HOM05D007265 ORTHO05D009118 7.8e-09 63.2 48 64.6
BcaC03g16694 Brassica carinata HOM05D007265 ORTHO05D009118 1.3e-08 62.4 42 83.3
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.9e-07 58.5 37 75.7
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 1.9e-07 58.5 37 75.7
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 4.3e-07 57.4 39 74.4


User provided reference genes

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