Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g06997 Brassica carinata HOM05D007076 ORTHO05D008800 6.8e-142 507.3 251 100.0
BolC4t28783H Brassica oleracea HOM05D007076 ORTHO05D008800 1.1e-139 500.0 252 99.2
BraA04t18948Z Brassica rapa HOM05D007076 ORTHO05D008800 7.5e-133 477.2 255 94.9
A04p35120 Brassica napus HOM05D007076 ORTHO05D008800 2.2e-132 475.7 255 94.5
BcaB06g29501 Brassica carinata HOM05D007076 ORTHO05D008800 1.1e-115 420.2 256 83.2
Sp4g29830 Schrenkiella parvula HOM05D007076 ORTHO05D008800 1.2e-109 400.2 252 81.3
Thhalv10001598m.g Eutrema salsugineum HOM05D007076 ORTHO05D008800 3.2e-107 392.1 248 79.8
CARHR143300 Cardamine hirsuta HOM05D007076 ORTHO05D008800 9.2e-107 390.6 255 78.0
Carub.0004s3063 Capsella rubella HOM05D007076 ORTHO05D008800 1.6e-106 389.8 240 80.4
AL4G47500 Arabidopsis lyrata HOM05D007076 ORTHO05D008800 8.1e-103 377.5 238 79.0
C04p73020 Brassica napus HOM05D007076 ORTHO05D008800 2.6e-101 372.5 180 99.4
Aa31LG1G29340 Aethionema arabicum HOM05D007076 ORTHO05D008800 1.7e-97 359.8 251 72.1
CANSAT11G0571 Cannabis sativa HOM05D007076 ORTHO05D008800 3.6e-95 352.1 248 69.8
GSVIVG01012872001 Vitis vinifera HOM05D007076 ORTHO05D008800 1.4e-94 350.1 199 81.4
THA.LOC104817530 Tarenaya hassleriana HOM05D007076 ORTHO05D008800 1.8e-94 349.7 239 72.0
FAN23G1541 Fragaria x ananassa HOM05D007076 ORTHO05D008800 5.3e-94 348.2 246 70.3
FAN26G2288 Fragaria x ananassa HOM05D007076 ORTHO05D008800 6.9e-94 347.8 248 68.1
Thecc.09G139600 Theobroma cacao HOM05D007076 ORTHO05D008800 1.5e-93 346.7 231 72.3
FvH4_1g01870 Fragaria vesca HOM05D007076 ORTHO05D008800 2.6e-93 345.9 246 69.5
FAN19G3087 Fragaria x ananassa HOM05D007076 ORTHO05D008800 2.6e-93 345.9 246 69.5
Eucgr.C04107 Eucalyptus grandis HOM05D007076 ORTHO05D008800 3.4e-93 345.5 231 72.7
RcHm_v2.0_Chr2g0086841 Rosa chinensis HOM05D007076 ORTHO05D008800 9.9e-93 344.0 246 68.7
Duzib168G1701 Durio zibethinus HOM05D007076 ORTHO05D008800 1.3e-92 343.6 198 78.3
MD15G1161100 Malus domestica HOM05D007076 ORTHO05D008800 4.9e-92 341.7 233 70.8
TWI34G1052 Tripterygium wilfordii HOM05D007076 ORTHO05D008800 1.4e-91 340.1 237 70.0
Gohir.A05G012200 Gossypium hirsutum HOM05D007076 ORTHO05D008800 1.9e-91 339.7 228 71.5
Nitab4.5_0003305g0010 Nicotiana tabacum HOM05D007076 ORTHO05D008800 2.4e-91 339.3 207 75.8
Gorai.009G013300 Gossypium raimondii HOM05D007076 ORTHO05D008800 4.2e-91 338.6 228 71.9
Prupe.7G256300 Prunus persica HOM05D007076 ORTHO05D008800 4.2e-91 338.6 250 67.6
COL.COLO4_24128 Corchorus olitorius HOM05D007076 ORTHO05D008800 7.1e-91 337.8 199 78.4
Actinidia21919 Actinidia chinensis HOM05D007076 ORTHO05D008800 9.3e-91 337.4 233 69.5
TAR625G0498 Trochodendron aralioides HOM05D007076 ORTHO05D008800 1.2e-90 337.0 233 68.2
Manes.14G120300 Manihot esculenta HOM05D007076 ORTHO05D008800 2.1e-90 336.3 198 76.8
Gohir.D05G013300 Gossypium hirsutum HOM05D007076 ORTHO05D008800 4.6e-90 335.1 228 71.5
PGR142G4145 Punica granatum HOM05D007076 ORTHO05D008800 4.6e-90 335.1 232 70.3
Peaxi162Scf00088g00017 Petunia axillaris HOM05D007076 ORTHO05D008800 5.1e-89 331.6 237 68.4
QL02p091054 Quercus lobata HOM05D007076 ORTHO05D008800 5.1e-89 331.6 220 71.8
Nitab4.5_0008829g0010 Nicotiana tabacum HOM05D007076 ORTHO05D008800 6.6e-89 331.3 238 66.8
Cpa.g.sc46.76 Carica papaya HOM05D007076 ORTHO05D008800 8.7e-89 330.9 216 72.7
Solyc07g007280.4 Solanum lycopersicum HOM05D007076 ORTHO05D008800 2.5e-88 329.3 232 68.5
CiPaw.15G183500 Carya illinoinensis HOM05D007076 ORTHO05D008800 3.3e-88 328.9 231 67.5
AT2G47910 Arabidopsis thaliana HOM05D007076 ORTHO05D008800 5.6e-88 328.2 178 87.6
Lsat_1_v5_gn_7_46141 Lactuca sativa HOM05D007076 ORTHO05D008800 7.3e-88 327.8 209 72.2
CAN.G728.2 Capsicum annuum HOM05D007076 ORTHO05D008800 9.6e-88 327.4 200 76.5
Ca_21630_v3 Cicer arietinum L. HOM05D007076 ORTHO05D008800 9.6e-88 327.4 227 69.6
Ca_30692_v3 Cicer arietinum L. HOM05D007076 ORTHO05D008800 9.6e-88 327.4 227 69.6
Ciclev10009248m.g Citrus clementina HOM05D007076 ORTHO05D008800 1.6e-87 326.6 229 68.6
Glyma.17G106200 Glycine max HOM05D007076 ORTHO05D008800 1.6e-87 326.6 221 69.7
Sed0007180 Sechium edule HOM05D007076 ORTHO05D008800 2.1e-87 326.2 204 73.0
MSTRG.19622 Avicennia marina HOM05D007076 ORTHO05D008800 4.8e-87 325.1 230 68.7
Sopen07g003340 Solanum pennellii HOM05D007076 ORTHO05D008800 4.8e-87 325.1 232 68.5
Medtr4g116350 Medicago truncatula HOM05D007076 ORTHO05D008800 1.1e-86 323.9 232 68.1
PGSC0003DMG400030692 Solanum tuberosum HOM05D007076 ORTHO05D008800 1.4e-86 323.6 232 67.7
Lalb_Chr07g0179431 Lupinus albus HOM05D007076 ORTHO05D008800 2.4e-86 322.8 232 67.7
Migut.J01262 Erythranthe guttata HOM05D007076 ORTHO05D008800 3.1e-86 322.4 204 74.0
Potri.006G060100 Populus trichocarpa HOM05D007076 ORTHO05D008800 5.3e-86 321.6 227 65.6
VMungo1215G2969 Vigna mungo HOM05D007076 ORTHO05D008800 5.3e-86 321.6 199 73.9
DCAR_017767 Daucus carota HOM05D007076 ORTHO05D008800 6.9e-86 321.2 204 74.0
Oeu058595.1 Olea europaea HOM05D007076 ORTHO05D008800 6.9e-86 321.2 232 66.8
vmacro21890 Vaccinium macrocarpon HOM05D007076 ORTHO05D008800 6.9e-86 321.2 232 68.1
MELO3C010270.2 Cucumis melo HOM05D007076 ORTHO05D008800 1.2e-85 320.5 229 67.7
Glyma.13G164900 Glycine max HOM05D007076 ORTHO05D008800 1.2e-85 320.5 234 65.8
HanXRQChr09g0243091 Helianthus annuus HOM05D007076 ORTHO05D008800 1.5e-85 320.1 199 73.4
Cfa020904 Carpinus fangiana HOM05D007076 ORTHO05D008800 2.0e-85 319.7 223 69.5
ClCG06G011950 Citrullus lanatus HOM05D007076 ORTHO05D008800 2.0e-85 319.7 227 66.5
Rhsim01G0051700 Rhododendron simsii HOM05D007076 ORTHO05D008800 3.4e-85 318.9 198 73.2
TPR.G15804 Trifolium pratense HOM05D007076 ORTHO05D008800 4.5e-85 318.5 222 68.5
Sabra06G0043400 Salix brachista HOM05D000638 ORTHO05D000801 9.9e-85 317.4 205 71.7
CsaV3_1G028410 Cucumis sativus L. HOM05D007076 ORTHO05D008800 1.7e-84 316.6 227 67.0
Nn2g12218 Nelumbo nucifera HOM05D007076 ORTHO05D008800 1.7e-84 316.6 236 65.7
Lj4g0004831 Lotus japonicus HOM05D007076 ORTHO05D008800 2.9e-84 315.8 248 62.9
FAN28G0280 Fragaria x ananassa HOM05D007076 ORTHO05D008800 8.4e-84 314.3 246 65.4
Psat7g049360 Pisum sativum HOM05D007076 ORTHO05D008800 1.9e-83 313.2 199 72.4
Nn1g00072 Nelumbo nucifera HOM05D007076 ORTHO05D008800 2.4e-83 312.8 233 66.1
MBI14_g03617_MAGBIO Magnolia biondii HOM05D007076 ORTHO05D008800 7.1e-83 311.2 246 64.2
Atru.chr7.279 Acer truncatum HOM05D007076 ORTHO05D008800 1.6e-82 310.1 187 75.9
Aqoxy7G02462 Aquilegia oxysepala HOM05D007076 ORTHO05D008800 1.3e-81 307.0 228 64.9
PSO170G2339 Papaver somniferum HOM05D007076 ORTHO05D008800 3.0e-81 305.8 232 65.5
AUR62041461 Chenopodium quinoa HOM05D007076 ORTHO05D008800 5.1e-81 305.1 226 66.4
PSO017G3183 Papaver somniferum HOM05D007076 ORTHO05D008800 2.5e-80 302.8 228 64.5
Cc06_g07520 Coffea canephora HOM05D007076 ORTHO05D008800 3.3e-80 302.4 263 59.7
Ah.00g000030 Amaranthus hybridus HOM05D007076 ORTHO05D008800 7.4e-80 301.2 199 71.4
Dinv41435 Davidia involucrata HOM05D007076 ORTHO05D008800 1.6e-79 300.1 224 65.2
Lj9A706G31 Lonicera japonica HOM05D007076 ORTHO05D008800 1.6e-79 300.1 175 78.3
SalBow1G5229 Salvia bowleyana HOM05D007076 ORTHO05D008800 6.2e-79 298.1 242 63.6
Phvul.003G173400 Phaseolus vulgaris HOM05D007076 ORTHO05D008800 1.8e-78 296.6 179 74.3
EL10Ac8g18804 Beta vulgaris HOM05D007076 ORTHO05D008800 4.0e-78 295.4 230 63.5
ATR0681G287 Amborella trichopoda HOM05D007076 ORTHO05D008800 6.9e-78 294.7 195 69.7
CDE05G2705 Ceratophyllum demersum HOM05D007076 ORTHO05D008800 1.5e-77 293.5 204 67.2
Os08g0167500 Oryza sativa ssp. japonica HOM05D007076 ORTHO05D008800 1.0e-76 290.8 206 67.5
ECA240G2388 Erigeron canadensis HOM05D007076 ORTHO05D008800 1.3e-76 290.4 167 78.4
Zm00001eb172070 Zea mays HOM05D007076 ORTHO05D008800 2.9e-76 289.3 219 64.8
Atru.BG.23.p Acer truncatum HOM05D007076 ORTHO05D008800 3.8e-76 288.9 175 77.1
Haze_19333 Corylus avellana HOM05D007076 ORTHO05D008800 2.1e-74 283.1 223 62.8
arahy.Tifrunner.gnm1.ann1.W7VCER Arachis hypogaea HOM05D007076 ORTHO05D008800 2.7e-74 282.7 226 62.4
Duzib187G0567 Durio zibethinus HOM05D007076 ORTHO05D008800 5.3e-70 268.5 167 74.3
unitig_37.g12628 Utricularia gibba HOM05D007076 ORTHO05D008800 1.3e-68 263.8 167 72.5
arahy.Tifrunner.gnm1.ann1.80N34X Arachis hypogaea HOM05D007076 ORTHO05D008800 6.3e-63 245.0 226 55.3
AUR62011242 Chenopodium quinoa HOM05D007076 ORTHO05D008800 8.5e-60 234.6 226 54.9
Nn3g21909 Nelumbo nucifera HOM05D007076 ORTHO05D008800 1.8e-57 226.9 176 63.1
SMO119G0333 Selaginella moellendorffii HOM05D007076 ORTHO05D008800 2.0e-56 223.4 175 57.7
Pp3c22_2510 Physcomitrium patens HOM05D007076 ORTHO05D008800 2.2e-55 219.9 232 46.1
Mapoly0095s0056 Marchantia polymorpha HOM05D007076 ORTHO05D008800 2.8e-55 219.5 197 53.8
Nn1g04045 Nelumbo nucifera HOM05D007076 ORTHO05D008800 4.8e-55 218.8 133 74.4
Migut.J01256 Erythranthe guttata HOM05D007076 ORTHO05D008800 2.0e-37 160.2 134 61.2
AagrBONN_evm.TU.Sc2ySwM_362.135 Anthoceros agrestis HOM05D007076 ORTHO05D008800 1.9e-35 153.7 204 45.6
MD02G1016600 Malus domestica HOM05D007076 ORTHO05D008800 2.2e-23 113.6 237 34.6
CSS0010696 Camellia sinensis var. sinensis HOM05D007076 ORTHO05D008800 1.4e-22 110.9 63 77.8
Nn1g02289 Nelumbo nucifera HOM05D007076 ORTHO05D008800 9.2e-22 108.2 69 72.5
CSS0049676 Camellia sinensis var. sinensis HOM05D007076 ORTHO05D008800 3.5e-21 106.3 59 78.0
Oeu028011.1 Olea europaea HOM05D007076 ORTHO05D008800 4.5e-21 105.9 170 39.4
Nn1g02288 Nelumbo nucifera HOM05D007076 ORTHO05D008800 1.1e-19 101.3 84 63.1
CBR_g8382 Chara braunii HOM05D007076 ORTHO05D008800 1.6e-10 70.9 62 53.2


User provided reference genes

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