Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g06992 Brassica carinata HOM05D005667 ORTHO05D007299 2.0e-208 728.8 345 100.0
BolC4t28779H Brassica oleracea HOM05D005667 ORTHO05D007299 2.1e-194 682.2 375 89.3
C04p72980 Brassica napus HOM05D005667 ORTHO05D007299 2.0e-192 675.6 375 88.0
A04p35070 Brassica napus HOM05D005667 ORTHO05D007299 2.0e-184 649.0 374 85.0
BraA04t18943Z Brassica rapa HOM05D005667 ORTHO05D007299 3.2e-182 641.7 375 84.8
AL4G47370 Arabidopsis lyrata HOM05D005667 ORTHO05D007299 2.4e-174 615.5 386 78.0
Sp4g29720 Schrenkiella parvula HOM05D005667 ORTHO05D007299 4.1e-174 614.8 389 76.6
AT2G47790 Arabidopsis thaliana HOM05D005667 ORTHO05D007299 6.0e-173 610.9 389 76.6
BcaB06g29498 Brassica carinata HOM05D005667 ORTHO05D007299 4.3e-171 604.7 405 74.8
CARHR143160 Cardamine hirsuta HOM05D005667 ORTHO05D007299 4.1e-166 588.2 389 74.6
Thhalv10001494m.g Eutrema salsugineum HOM05D005667 ORTHO05D007299 6.6e-164 580.9 386 74.4
Carub.0004s3050 Capsella rubella HOM05D005667 ORTHO05D007299 1.2e-162 576.6 383 72.6
Aa31LG1G29130 Aethionema arabicum HOM05D005667 ORTHO05D007299 2.9e-159 565.5 392 71.4
THA.LOC104817511 Tarenaya hassleriana HOM05D005667 ORTHO05D007299 1.6e-149 533.1 368 68.2
Atru.chr5.1169 Acer truncatum HOM05D005667 ORTHO05D007299 1.3e-132 476.9 384 62.5
Actinidia32226 Actinidia chinensis HOM05D005667 ORTHO05D007299 4.3e-131 471.9 388 59.8
Psat3g021960 Pisum sativum HOM05D005667 ORTHO05D007299 1.6e-130 469.9 394 60.2
Medtr7g108870 Medicago truncatula HOM05D005667 ORTHO05D007299 2.8e-130 469.2 384 60.4
Medtr8g058590 Medicago truncatula HOM05D005667 ORTHO05D007299 2.8e-130 469.2 384 60.4
VMungo1383G3519 Vigna mungo HOM05D005667 ORTHO05D007299 8.2e-130 467.6 385 60.8
Lj1g0013419 Lotus japonicus HOM05D005667 ORTHO05D007299 2.4e-129 466.1 391 59.1
Phvul.001G206300 Phaseolus vulgaris HOM05D005667 ORTHO05D007299 2.4e-129 466.1 385 60.5
Glyma.03G213700 Glycine max HOM05D005667 ORTHO05D007299 4.1e-129 465.3 388 60.8
Dinv33042 Davidia involucrata HOM05D005667 ORTHO05D007299 5.9e-128 461.5 389 59.1
Cfa005935 Carpinus fangiana HOM05D005667 ORTHO05D007299 3.8e-127 458.8 385 60.0
QL12p027280 Quercus lobata HOM05D005667 ORTHO05D007299 5.0e-127 458.4 394 58.1
Thecc.01G298400 Theobroma cacao HOM05D005667 ORTHO05D007299 5.5e-126 454.9 388 59.0
Ca_09151_v3 Cicer arietinum L. HOM05D005667 ORTHO05D007299 9.3e-126 454.1 393 58.3
MD03G1286100 Malus domestica HOM05D005667 ORTHO05D007299 9.3e-126 454.1 386 59.6
Glyma.19G210500 Glycine max HOM05D005667 ORTHO05D007299 1.6e-125 453.4 388 58.8
AUR62033112 Chenopodium quinoa HOM05D005667 ORTHO05D007299 2.7e-125 452.6 357 61.6
arahy.Tifrunner.gnm1.ann1.AQSE8X Arachis hypogaea HOM05D005667 ORTHO05D007299 4.6e-125 451.8 388 58.0
Duzib138G1280 Durio zibethinus HOM05D005667 ORTHO05D007299 2.3e-124 449.5 390 58.2
TAR627G0762 Trochodendron aralioides HOM05D005667 ORTHO05D007299 2.3e-124 449.5 386 58.8
Ciclev10020175m.g Citrus clementina HOM05D005667 ORTHO05D007299 5.1e-124 448.4 446 53.6
MD11G1306000 Malus domestica HOM05D005667 ORTHO05D007299 5.1e-124 448.4 386 58.8
Lalb_Chr04g0259821 Lupinus albus HOM05D005667 ORTHO05D007299 6.7e-124 448.0 389 57.8
vmacro14998 Vaccinium macrocarpon HOM05D005667 ORTHO05D007299 6.7e-124 448.0 393 57.3
TAR365G0445 Trochodendron aralioides HOM05D005667 ORTHO05D007299 1.1e-123 447.2 386 58.8
Nn4g25820 Nelumbo nucifera HOM05D005667 ORTHO05D007299 1.5e-123 446.8 389 58.6
TPR.G9636 Trifolium pratense HOM05D005667 ORTHO05D007299 1.5e-123 446.8 391 58.1
arahy.Tifrunner.gnm1.ann1.P0XQ2X Arachis hypogaea HOM05D005667 ORTHO05D007299 2.5e-123 446.0 388 57.0
AUR62008656 Chenopodium quinoa HOM05D005667 ORTHO05D007299 2.5e-123 446.0 357 60.8
Manes.01G217700 Manihot esculenta HOM05D005667 ORTHO05D007299 3.3e-123 445.7 359 61.3
Sc05g0004030 Simmondsia chinensis HOM05D005667 ORTHO05D007299 3.3e-123 445.7 389 57.6
TWI23G0451 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 3.3e-123 445.7 386 58.8
Hund18138 Selenicereus undatus HOM05D005667 ORTHO05D007299 5.7e-123 444.9 389 58.4
Sabra02G0153700 Salix brachista HOM05D005667 ORTHO05D007299 9.7e-123 444.1 394 58.4
COL.COLO4_23365 Corchorus olitorius HOM05D005667 ORTHO05D007299 1.3e-122 443.7 388 58.5
Haze_04910 Corylus avellana HOM05D005667 ORTHO05D007299 1.3e-122 443.7 416 55.3
FvH4_2g25530 Fragaria vesca HOM05D005667 ORTHO05D007299 1.3e-122 443.7 370 60.3
CANSAT25G0856 Cannabis sativa HOM05D005667 ORTHO05D007299 1.6e-122 443.4 386 57.0
Hma1.2p1_0209F.1_g088490 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 2.8e-122 442.6 389 58.6
TWI59G1070 Tripterygium wilfordii HOM05D005667 ORTHO05D007299 4.8e-122 441.8 390 58.2
BcaB06g29495 Brassica carinata HOM05D005667 ORTHO05D007299 1.1e-121 440.7 245 85.3
EL10Ac7g17451 Beta vulgaris HOM05D005667 ORTHO05D007299 5.3e-121 438.3 354 61.0
MELO3C017966.2 Cucumis melo HOM05D005667 ORTHO05D007299 9.1e-121 437.6 385 57.4
DCAR_005798 Daucus carota HOM05D005667 ORTHO05D007299 9.1e-121 437.6 382 57.3
Lalb_Chr18g0047071 Lupinus albus HOM05D005667 ORTHO05D007299 1.2e-120 437.2 392 57.1
Ah.08g213150 Amaranthus hybridus HOM05D005667 ORTHO05D007299 5.9e-120 434.9 394 56.1
Nitab4.5_0002469g0040 Nicotiana tabacum HOM05D005667 ORTHO05D007299 1.7e-119 433.3 388 55.9
QL12p026655 Quercus lobata HOM05D005667 ORTHO05D007299 1.7e-119 433.3 372 58.1
CiPaw.07G107100 Carya illinoinensis HOM05D005667 ORTHO05D007299 2.2e-119 433.0 389 57.3
CsaV3_4G000700 Cucumis sativus L. HOM05D005667 ORTHO05D007299 5.0e-119 431.8 385 57.4
Eucgr.K03468 Eucalyptus grandis HOM05D005667 ORTHO05D007299 1.1e-118 430.6 373 57.6
Solyc09g075000.3 Solanum lycopersicum HOM05D005667 ORTHO05D007299 4.2e-118 428.7 387 55.3
CSS0019258 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 1.2e-117 427.2 387 56.6
Sopen09g029820 Solanum pennellii HOM05D005667 ORTHO05D007299 1.2e-117 427.2 387 55.6
HanXRQChr04g0118041 Helianthus annuus HOM05D005667 ORTHO05D007299 1.6e-117 426.8 385 56.9
Sed0014922 Sechium edule HOM05D005667 ORTHO05D007299 3.6e-117 425.6 372 57.3
MSTRG.21625 Avicennia marina HOM05D005667 ORTHO05D007299 6.1e-117 424.9 388 57.7
Gohir.A12G131200 Gossypium hirsutum HOM05D005667 ORTHO05D007299 2.3e-116 422.9 387 54.8
Gohir.D12G135100 Gossypium hirsutum HOM05D005667 ORTHO05D007299 5.1e-116 421.8 386 54.4
PGSC0003DMG400011397 Solanum tuberosum HOM05D005667 ORTHO05D007299 8.8e-116 421.0 386 54.9
Potri.002G205600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.5e-115 420.2 388 56.2
FAN20G0834 Fragaria x ananassa HOM05D005667 ORTHO05D007299 5.7e-115 418.3 380 57.1
GSVIVG01027987001 Vitis vinifera HOM05D005667 ORTHO05D007299 3.7e-114 415.6 337 61.1
Prupe.8G259400 Prunus persica HOM05D005667 ORTHO05D007299 9.1e-113 411.0 345 60.3
Potri.014G130600 Populus trichocarpa HOM05D005667 ORTHO05D007299 1.2e-112 410.6 384 56.0
Gorai.008G146100 Gossypium raimondii HOM05D005667 ORTHO05D007299 4.5e-112 408.7 385 54.3
Lsat_1_v5_gn_8_53441 Lactuca sativa HOM05D005667 ORTHO05D007299 1.0e-111 407.5 396 54.0
Nitab4.5_0005515g0060 Nicotiana tabacum HOM05D005667 ORTHO05D007299 2.2e-111 406.4 388 54.9
Aqoxy2G02973 Aquilegia oxysepala HOM05D005667 ORTHO05D007299 6.5e-111 404.8 376 55.9
Migut.D00204 Erythranthe guttata HOM05D005667 ORTHO05D007299 6.5e-111 404.8 388 54.6
Sabra14G0097200 Salix brachista HOM05D005667 ORTHO05D007299 1.9e-110 403.3 384 54.7
SGA_v2.0_scaffold2G01401 Striga asiatica HOM05D005667 ORTHO05D007299 4.7e-109 398.7 387 54.3
PSO170G6061 Papaver somniferum HOM05D005667 ORTHO05D007299 6.1e-109 398.3 375 54.7
PGR044G1684 Punica granatum HOM05D005667 ORTHO05D007299 1.0e-108 397.5 391 52.2
Actinidia24829 Actinidia chinensis HOM05D005667 ORTHO05D007299 1.4e-108 397.1 353 57.8
PSO210G4429 Papaver somniferum HOM05D005667 ORTHO05D007299 1.8e-108 396.7 395 52.7
Cc01_g20730 Coffea canephora HOM05D005667 ORTHO05D007299 3.3e-107 392.5 447 48.5
Lj1C26T7 Lonicera japonica HOM05D005667 ORTHO05D007299 1.7e-106 390.2 325 58.8
SalBow3G0511 Salvia bowleyana HOM05D005667 ORTHO05D007299 1.8e-105 386.7 371 55.3
CDE08G0318 Ceratophyllum demersum HOM05D005667 ORTHO05D007299 5.3e-105 385.2 383 49.6
Rhsim01G0284200 Rhododendron simsii HOM05D005667 ORTHO05D007299 1.3e-103 380.6 382 52.6
ATR0796G332 Amborella trichopoda HOM05D005667 ORTHO05D007299 8.5e-103 377.9 386 49.5
HPP92_027132 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.6e-101 373.6 373 52.0
Peaxi162Scf00001g00492 Petunia axillaris HOM05D005667 ORTHO05D007299 3.0e-100 369.4 345 53.6
ClCG10G010830 Citrullus lanatus HOM05D005667 ORTHO05D007299 2.2e-98 363.2 393 50.4
unitig_0.g1174 Utricularia gibba HOM05D005667 ORTHO05D007299 4.1e-97 359.0 415 48.2
SHI15190 Sapria himalayana HOM05D005667 ORTHO05D007299 7.0e-97 358.2 376 51.3
SEGI_23788 Sequoiadendron giganteum HOM05D005667 ORTHO05D007299 4.5e-96 355.5 387 48.8
Hma1.2p1_0209F.1_g088500 Hydrangea macrophylla HOM05D005667 ORTHO05D007299 3.8e-95 352.4 431 46.6
CSS0024566 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 6.1e-93 345.1 389 50.4
CSS0050073 Camellia sinensis var. sinensis HOM05D005667 ORTHO05D007299 6.8e-92 341.7 389 50.1
Sc05g0001380 Simmondsia chinensis HOM05D005667 ORTHO05D007299 4.4e-91 339.0 302 55.0
ECA236G1571 Erigeron canadensis HOM05D005667 ORTHO05D007299 4.1e-89 332.4 340 52.6
Cpa.g.sc9.222 Carica papaya HOM05D005667 ORTHO05D007299 1.1e-81 307.8 285 56.8
Dinv19706 Davidia involucrata HOM05D005667 ORTHO05D007299 1.6e-77 293.9 259 56.0
Medtr8g058557 Medicago truncatula HOM05D005667 ORTHO05D007299 1.4e-76 290.8 232 61.2
Pp3c11_14960 Physcomitrium patens HOM05D005667 ORTHO05D007299 7.5e-75 285.0 378 43.7
Pp3c2_26100 Physcomitrium patens HOM05D005667 ORTHO05D007299 5.4e-73 278.9 380 44.2
SMO329G0065 Selaginella moellendorffii HOM05D005667 ORTHO05D007299 4.7e-69 265.8 347 43.8
Mapoly0153s0027 Marchantia polymorpha HOM05D005667 ORTHO05D007299 4.0e-68 262.7 377 40.8
Pp3c11_15090 Physcomitrium patens HOM05D005667 ORTHO05D007299 6.6e-63 245.4 324 43.2
RcHm_v2.0_Chr6g0293741 Rosa chinensis HOM05D005667 ORTHO05D007299 7.3e-62 241.9 201 57.7
HPP92_021590 Vanilla planifolia HOM05D005667 ORTHO05D007299 1.7e-58 230.7 226 50.4
AagrBONN_evm.TU.Sc2ySwM_344.2785 Anthoceros agrestis HOM05D005667 ORTHO05D007299 1.7e-47 194.1 234 43.2
Zm00001eb157470 Zea mays HOM05D005667 ORTHO05D007299 1.9e-46 190.7 205 46.3
BcaC02g06993 Brassica carinata HOM05D005667 ORTHO05D007299 6.2e-45 185.7 118 79.7
Nn3g21456 Nelumbo nucifera HOM05D005667 ORTHO05D007299 5.2e-44 182.6 282 39.7
Os12g0294100 Oryza sativa ssp. japonica HOM05D005667 ORTHO05D007299 3.2e-41 173.3 189 48.7
Actinidia21054 Actinidia chinensis HOM05D005667 ORTHO05D007299 6.0e-40 169.1 156 53.2
Oeu011452.2 Olea europaea HOM05D005667 ORTHO05D007299 1.7e-39 167.5 167 55.7
Cre03.g178050 Chlamydomonas reinhardtii HOM05D005667 ORTHO05D007299 5.8e-35 152.5 351 32.2
RcHm_v2.0_Chr6g0293751 Rosa chinensis HOM05D005667 ORTHO05D007299 3.8e-34 149.8 115 66.1
PRCOL_00003266 Prasinoderma coloniale HOM05D005667 ORTHO05D007299 3.5e-32 143.3 339 31.6
MCO09G319 Micromonas commoda HOM05D005667 ORTHO05D007299 6.4e-26 122.5 378 28.6
Migut.D00125 Erythranthe guttata HOM05D005667 ORTHO05D007299 4.0e-20 103.2 145 43.4
Migut.G00109 Erythranthe guttata HOM05D005667 ORTHO05D007299 1.3e-18 98.2 166 36.1
CBR_g34279 Chara braunii HOM05D005667 ORTHO05D007299 2.2e-13 80.9 156 34.0
CBR_g31107 Chara braunii HOM05D000019 ORTHO05D000048 3.4e-11 73.6 137 35.8
CBR_g31109 Chara braunii HOM05D000019 ORTHO05D000048 7.6e-11 72.4 69 47.8
Actinidia13473 Actinidia chinensis HOM05D005667 ORTHO05D000474 1.9e-06 57.8 68 42.6


User provided reference genes

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