Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g06977 Brassica carinata HOM05D003529 ORTHO05D004106 3.1e-60 235.0 119 100.0
C04p72830 Brassica napus HOM05D003529 ORTHO05D004106 3.1e-60 235.0 119 100.0
BolC4t28764H Brassica oleracea HOM05D003529 ORTHO05D004106 3.5e-56 221.5 133 88.0
A04p34950 Brassica napus HOM05D003529 ORTHO05D004106 1.6e-37 159.5 134 68.7
BraSC79t46685Z Brassica rapa HOM05D003529 ORTHO05D004106 1.6e-37 159.5 134 68.7
AT2G47485 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 3.4e-35 151.8 136 63.2
AL4G47050 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 5.8e-35 151.0 136 63.2
BcaB06g29439 Brassica carinata HOM05D003529 ORTHO05D004106 7.6e-35 150.6 126 66.7
CARHR142880 Cardamine hirsuta HOM05D003529 ORTHO05D004106 1.7e-34 149.4 136 63.2
Sp4g29420 Schrenkiella parvula HOM05D003529 ORTHO05D004106 4.9e-34 147.9 132 65.9
A05p00440 Brassica napus HOM05D003529 ORTHO05D004106 5.5e-33 144.4 136 61.0
BraA05t19042Z Brassica rapa HOM05D003529 ORTHO05D004106 5.5e-33 144.4 136 61.0
Thhalv10001673m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 1.2e-32 143.3 138 63.0
BolC4t21684H Brassica oleracea HOM05D003529 ORTHO05D004106 6.0e-32 141.0 136 60.3
C04p00390 Brassica napus HOM05D003529 ORTHO05D004106 1.8e-31 139.4 136 59.6
BcaB02g08767 Brassica carinata HOM05D003529 ORTHO05D004106 9.6e-30 133.7 113 66.4
Carub.0004s3022 Capsella rubella HOM05D003529 ORTHO05D004106 1.8e-28 129.4 139 55.4
Sp5g00860 Schrenkiella parvula HOM05D003529 ORTHO05D004106 1.9e-22 109.4 104 63.5
Thhalv10006300m.g Eutrema salsugineum HOM05D003529 ORTHO05D004106 9.7e-22 107.1 104 62.5
AT3G62650 Arabidopsis thaliana HOM05D003529 ORTHO05D004106 1.6e-21 106.3 106 61.3
CARHR172920 Cardamine hirsuta HOM05D003529 ORTHO05D004106 1.6e-21 106.3 109 59.6
A07p26020 Brassica napus HOM05D003529 ORTHO05D004106 2.2e-21 105.9 104 61.5
BolC6t38003H Brassica oleracea HOM05D003529 ORTHO05D004106 2.2e-21 105.9 104 61.5
BraA07t30250Z Brassica rapa HOM05D003529 ORTHO05D004106 2.2e-21 105.9 104 61.5
AL5G45400 Arabidopsis lyrata HOM05D003529 ORTHO05D004106 2.8e-21 105.5 106 60.4
BcaB02g08109 Brassica carinata HOM05D003529 ORTHO05D004106 3.7e-21 105.1 104 57.7
Aa31LG10G16460 Aethionema arabicum HOM05D003529 ORTHO05D004106 8.2e-21 104.0 111 61.3
C08p37400 Brassica napus HOM05D003529 ORTHO05D004106 1.8e-20 102.8 104 60.6
BcaC07g40741 Brassica carinata HOM05D003529 ORTHO05D004106 2.4e-20 102.4 104 59.6
BcaC07g40776 Brassica carinata HOM05D003529 ORTHO05D004106 2.4e-20 102.4 104 59.6
C06p28320 Brassica napus HOM05D003529 ORTHO05D004106 2.4e-20 102.4 105 60.0
BolC8t51321H Brassica oleracea HOM05D003529 ORTHO05D004106 2.4e-20 102.4 104 59.6
A09p54520 Brassica napus HOM05D003529 ORTHO05D004106 3.1e-20 102.1 104 60.6
BraA09t40864Z Brassica rapa HOM05D003529 ORTHO05D004106 3.1e-20 102.1 104 60.6
THA.LOC104817473 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 4.1e-20 101.7 131 51.1
BcaC08g45209 Brassica carinata HOM05D003529 ORTHO05D004106 5.3e-20 101.3 104 59.6
Carub.0005s2931 Capsella rubella HOM05D003529 ORTHO05D004106 1.2e-19 100.1 109 58.7
BcaB02g07332 Brassica carinata HOM05D003529 ORTHO05D004106 2.0e-19 99.4 104 58.7
THA.LOC104802191 Tarenaya hassleriana HOM05D003529 ORTHO05D004106 6.5e-18 94.4 124 48.4
Aa31LG1G28790 Aethionema arabicum HOM05D003529 ORTHO05D004106 2.7e-16 89.0 136 46.3
Cpa.g.sc151.47 Carica papaya HOM05D003529 ORTHO05D004106 7.4e-14 80.9 105 50.5
SHI19869 Sapria himalayana HOM05D000024 ORTHO05D000007 3.7e-13 78.6 104 48.1
MBI18_g42974_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 5.3e-12 74.7 108 46.3
MBI18_g45029_MAGBIO Magnolia biondii HOM05D003529 ORTHO05D004106 5.3e-12 74.7 108 46.3
unitig_578.g16622 Utricularia gibba HOM05D003529 ORTHO05D004106 1.2e-11 73.6 108 45.4
Aqoxy2G02834 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 2.6e-11 72.4 112 42.9
Dinv33090 Davidia involucrata HOM05D003529 ORTHO05D004106 2.6e-11 72.4 107 48.6
SGA_v2.0_scaffold376G50256 Striga asiatica HOM05D003529 ORTHO05D004106 3.4e-11 72.0 109 42.2
CiPaw.07G113900 Carya illinoinensis HOM05D003529 ORTHO05D004106 4.5e-11 71.6 109 45.0
Lsat_1_v5_gn_8_165720 Lactuca sativa HOM05D003529 ORTHO05D004106 4.5e-11 71.6 99 46.5
Nn3g21602 Nelumbo nucifera HOM05D003529 ORTHO05D004106 4.5e-11 71.6 107 44.9
SGA_v2.0_scaffold334G49044 Striga asiatica HOM05D003529 ORTHO05D004106 5.9e-11 71.2 108 45.4
Nn4g25678 Nelumbo nucifera HOM05D003529 ORTHO05D004106 7.7e-11 70.9 106 45.3
Dinv10056 Davidia involucrata HOM05D003529 ORTHO05D004106 1.3e-10 70.1 112 49.1
Hma1.2p1_0494F.1_g165600 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 1.3e-10 70.1 109 47.7
ECA236G3228 Erigeron canadensis HOM05D003529 ORTHO05D004106 1.7e-10 69.7 101 47.5
Nitab4.5_0001544g0150 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.7e-10 69.7 109 42.2
PSO541G3234 Papaver somniferum HOM05D003529 ORTHO05D004106 1.7e-10 69.7 132 42.4
TAR636G2223 Trochodendron aralioides HOM05D003529 ORTHO05D004106 1.7e-10 69.7 112 44.6
unitig_85.g27172 Utricularia gibba HOM05D002424 ORTHO05D002640 1.7e-10 69.7 107 47.7
CAN.G668.31 Capsicum annuum HOM05D003529 ORTHO05D004106 2.2e-10 69.3 104 47.1
DCAR_002866 Daucus carota HOM05D003529 ORTHO05D004106 2.2e-10 69.3 108 42.6
Sabra02G0158400 Salix brachista HOM05D003529 ORTHO05D004106 2.2e-10 69.3 105 43.8
PSO675G3938 Papaver somniferum HOM05D003529 ORTHO05D004106 3.8e-10 68.6 129 42.6
Potri.002G200000 Populus trichocarpa HOM05D003529 ORTHO05D004106 3.8e-10 68.6 107 43.9
Peaxi162Scf00147g00094 Petunia axillaris HOM05D003529 ORTHO05D004106 5.0e-10 68.2 111 38.7
Cfa005855 Carpinus fangiana HOM05D003529 ORTHO05D004106 6.5e-10 67.8 109 47.7
CsaV3_4G001080 Cucumis sativus L. HOM05D003529 ORTHO05D004106 6.5e-10 67.8 112 43.8
VMungo1383G3047 Vigna mungo HOM05D003529 ORTHO05D004106 6.5e-10 67.8 109 44.0
Atru.chr5.1067 Acer truncatum HOM05D003529 ORTHO05D004106 8.5e-10 67.4 111 43.2
Migut.D00112 Erythranthe guttata HOM05D003529 ORTHO05D004106 8.5e-10 67.4 107 41.1
Nitab4.5_0005587g0040 Nicotiana tabacum HOM05D003529 ORTHO05D004106 8.5e-10 67.4 107 41.1
Oeu006461.1 Olea europaea HOM05D003529 ORTHO05D004106 8.5e-10 67.4 112 41.1
Haze_04995 Corylus avellana HOM05D003529 ORTHO05D004106 1.1e-09 67.0 107 48.6
Hma1.2p1_0212F.1_g090160 Hydrangea macrophylla HOM05D003529 ORTHO05D004106 1.1e-09 67.0 105 46.7
Manes.01G224100 Manihot esculenta HOM05D003529 ORTHO05D004106 1.1e-09 67.0 108 44.4
Oeu011480.1 Olea europaea HOM05D003529 ORTHO05D004106 1.1e-09 67.0 112 41.1
PGSC0003DMG400007290 Solanum tuberosum HOM05D003529 ORTHO05D004106 1.1e-09 67.0 101 46.5
arahy.Tifrunner.gnm1.ann1.VI73GY Arachis hypogaea HOM05D003529 ORTHO05D004106 1.4e-09 66.6 122 39.3
CiPaw.08G092200 Carya illinoinensis HOM05D003529 ORTHO05D004106 1.4e-09 66.6 111 45.9
Oeu008332.1 Olea europaea HOM05D003529 ORTHO05D004106 1.4e-09 66.6 123 36.6
ClCG10G011190 Citrullus lanatus HOM05D003529 ORTHO05D004106 1.9e-09 66.2 111 43.2
HanXRQChr04g0114591 Helianthus annuus HOM05D003529 ORTHO05D004106 1.9e-09 66.2 98 43.9
Solyc09g075570.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 1.9e-09 66.2 101 45.5
Sopen09g030370 Solanum pennellii HOM05D003529 ORTHO05D004106 2.5e-09 65.9 101 45.5
TAR362G0595 Trochodendron aralioides HOM05D003529 ORTHO05D004106 2.5e-09 65.9 109 45.0
MELO3C017929.2 Cucumis melo HOM05D003529 ORTHO05D004106 3.2e-09 65.5 110 43.6
Duzib133G0282 Durio zibethinus HOM05D003529 ORTHO05D004106 4.2e-09 65.1 107 43.9
Haze_04994 Corylus avellana HOM05D003529 ORTHO05D004106 5.5e-09 64.7 107 47.7
HanXRQChr04g0121431 Helianthus annuus HOM05D003529 ORTHO05D004106 5.5e-09 64.7 104 43.3
Lj1C21T4 Lonicera japonica HOM05D003529 ORTHO05D004106 5.5e-09 64.7 100 46.0
Psat3g124960 Pisum sativum HOM05D003529 ORTHO05D004106 5.5e-09 64.7 105 39.0
PGSC0003DMG400031841 Solanum tuberosum HOM05D003529 ORTHO05D004106 5.5e-09 64.7 101 44.6
Cc01_g21210 Coffea canephora HOM05D003529 ORTHO05D004106 7.2e-09 64.3 110 41.8
Solyc06g009770.1 Solanum lycopersicum HOM05D003529 ORTHO05D004106 7.2e-09 64.3 106 43.4
Lalb_Chr02g0146621 Lupinus albus HOM05D003529 ORTHO05D004106 9.4e-09 63.9 107 38.3
Phvul.001G211200 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 9.4e-09 63.9 109 42.2
Psat3g020880 Pisum sativum HOM05D003529 ORTHO05D004106 9.4e-09 63.9 105 39.0
RcHm_v2.0_Chr7g0242001 Rosa chinensis HOM05D003529 ORTHO05D004106 9.4e-09 63.9 133 39.8
Glyma.10G015800 Glycine max HOM05D003529 ORTHO05D004106 1.2e-08 63.5 116 40.5
Peaxi162Scf00001g00294 Petunia axillaris HOM05D003529 ORTHO05D004106 1.2e-08 63.5 103 43.7
EL10Ac7g17606 Beta vulgaris HOM05D003529 ORTHO05D004106 1.6e-08 63.2 121 39.7
CSS0011800 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 1.6e-08 63.2 135 39.3
DCAR_005779 Daucus carota HOM05D003529 ORTHO05D004106 1.6e-08 63.2 107 42.1
Duzib211G0236 Durio zibethinus HOM05D003529 ORTHO05D004106 1.6e-08 63.2 105 42.9
Psat6g162960 Pisum sativum HOM05D003529 ORTHO05D004106 1.6e-08 63.2 115 38.3
Glyma.19G214300 Glycine max HOM05D003529 ORTHO05D004106 2.1e-08 62.8 112 41.1
Lalb_Chr15g0078411 Lupinus albus HOM05D003529 ORTHO05D004106 2.1e-08 62.8 68 52.9
MD03G1298600 Malus domestica HOM05D003529 ORTHO05D004106 2.1e-08 62.8 137 40.1
Nitab4.5_0000116g0160 Nicotiana tabacum HOM05D003529 ORTHO05D004106 2.1e-08 62.8 106 41.5
Rhsim01G0288700 Rhododendron simsii HOM05D003529 ORTHO05D004106 2.7e-08 62.4 113 42.5
Ciclev10022679m.g Citrus clementina HOM05D003529 ORTHO05D004106 3.6e-08 62.0 113 43.4
Lalb_Chr21g0309411 Lupinus albus HOM05D003529 ORTHO05D004106 3.6e-08 62.0 107 43.0
Lj2P1201T47 Lonicera japonica HOM05D003529 ORTHO05D004106 4.7e-08 61.6 103 42.7
Medtr1g087775 Medicago truncatula HOM05D003529 ORTHO05D004106 4.7e-08 61.6 118 38.1
Glyma.02G015200 Glycine max HOM05D003529 ORTHO05D004106 6.1e-08 61.2 114 39.5
HanXRQChr10g0285441 Helianthus annuus HOM05D003529 ORTHO05D004106 6.1e-08 61.2 99 41.4
Phvul.007G217000 Phaseolus vulgaris HOM05D003529 ORTHO05D004106 6.1e-08 61.2 114 38.6
QL12p028794 Quercus lobata HOM05D003529 ORTHO05D004106 6.1e-08 61.2 110 45.5
Sed0005967 Sechium edule HOM05D003529 ORTHO05D004106 6.1e-08 61.2 110 41.8
HPP92_006902 Vanilla planifolia HOM05D003529 ORTHO05D004106 6.1e-08 61.2 103 40.8
Ca_10307_v3 Cicer arietinum L. HOM05D003529 ORTHO05D004106 7.9e-08 60.8 112 38.4
HanXRQChr01g0000901 Helianthus annuus HOM05D003529 ORTHO05D004106 7.9e-08 60.8 102 39.2
Sopen06g004400 Solanum pennellii HOM05D003529 ORTHO05D004106 7.9e-08 60.8 102 44.1
Actinidia21017 Actinidia chinensis HOM05D001306 ORTHO05D001159 1.0e-07 60.5 109 38.5
FAN08G2441 Fragaria x ananassa HOM05D003529 ORTHO05D004106 1.0e-07 60.5 100 41.0
Gorai.007G125400 Gossypium raimondii HOM05D003529 ORTHO05D004106 1.0e-07 60.5 106 44.3
Lj5g0005836 Lotus japonicus HOM05D003529 ORTHO05D004106 1.0e-07 60.5 112 35.7
TPR.G19765 Trifolium pratense HOM05D003529 ORTHO05D004106 1.0e-07 60.5 116 37.9
Gohir.A11G112000 Gossypium hirsutum HOM05D003529 ORTHO05D004106 1.4e-07 60.1 106 43.4
Nitab4.5_0002454g0010 Nicotiana tabacum HOM05D003529 ORTHO05D004106 1.4e-07 60.1 107 42.1
FAN04G1108 Fragaria x ananassa HOM05D003529 ORTHO05D004106 2.3e-07 59.3 99 39.4
Gohir.D11G117100 Gossypium hirsutum HOM05D003529 ORTHO05D004106 2.3e-07 59.3 106 43.4
CANSAT25G0832 Cannabis sativa HOM05D003529 ORTHO05D004106 3.0e-07 58.9 141 36.9
COL.COLO4_23282 Corchorus olitorius HOM05D003529 ORTHO05D004106 3.0e-07 58.9 107 42.1
Actinidia25830 Actinidia chinensis HOM05D001306 ORTHO05D001159 3.9e-07 58.5 116 37.9
Gohir.A12G127800 Gossypium hirsutum HOM05D003529 ORTHO05D004106 3.9e-07 58.5 106 41.5
Gohir.D12G131300 Gossypium hirsutum HOM05D003529 ORTHO05D004106 3.9e-07 58.5 106 41.5
Gorai.008G142600 Gossypium raimondii HOM05D003529 ORTHO05D004106 3.9e-07 58.5 106 41.5
Prupe.1G317600 Prunus persica HOM05D004062 ORTHO05D004417 3.9e-07 58.5 75 46.7
Glyma.03G217700 Glycine max HOM05D003529 ORTHO05D004106 5.1e-07 58.2 111 37.8
VMungo0720G2108 Vigna mungo HOM05D003529 ORTHO05D004106 5.1e-07 58.2 114 36.8
Cc01_g04570 Coffea canephora HOM05D003529 ORTHO05D004106 6.7e-07 57.8 110 39.1
Duzib138G1135 Durio zibethinus HOM05D003529 ORTHO05D004106 6.7e-07 57.8 105 41.9
Lj1g0023980 Lotus japonicus HOM05D003529 ORTHO05D004106 6.7e-07 57.8 104 38.5
Rhsim13G0007500 Rhododendron simsii HOM05D003529 ORTHO05D004106 6.7e-07 57.8 110 41.8
AUR62025498 Chenopodium quinoa HOM05D003529 ORTHO05D004106 8.8e-07 57.4 132 37.1
Prupe.8G268600 Prunus persica HOM05D003529 ORTHO05D004106 8.8e-07 57.4 109 40.4
Medtr7g109220 Medicago truncatula HOM05D003529 ORTHO05D004106 1.1e-06 57.0 106 38.7
Prupe.1G317700 Prunus persica HOM05D004062 ORTHO05D004417 1.1e-06 57.0 79 45.6
ATR0706G120 Amborella trichopoda HOM05D003529 ORTHO05D004106 2.6e-06 55.8 104 42.3
CSS0040208 Camellia sinensis var. sinensis HOM05D003529 ORTHO05D004106 2.6e-06 55.8 107 40.2
Os01g0308600 Oryza sativa ssp. japonica HOM05D003529 ORTHO05D004106 3.3e-06 55.5 124 37.9
Sabra14G0092800 Salix brachista HOM05D003529 ORTHO05D004106 3.3e-06 55.5 108 38.0
CDE05G0935 Ceratophyllum demersum HOM05D000488 ORTHO05D000347 4.4e-06 55.1 104 34.6
Rhsim13G0007600 Rhododendron simsii HOM05D003529 ORTHO05D004106 4.4e-06 55.1 106 39.6
Zm00001eb285880 Zea mays HOM05D003529 ORTHO05D004106 4.4e-06 55.1 121 35.5
ECA248G1804 Erigeron canadensis HOM05D003529 ORTHO05D004106 5.7e-06 54.7 101 39.6
Potri.014G124900 Populus trichocarpa HOM05D003529 ORTHO05D004106 5.7e-06 54.7 105 39.0
Sabra16G0234400 Salix brachista HOM05D003529 ORTHO05D004106 7.4e-06 54.3 86 39.5
Aqoxy5G00808 Aquilegia oxysepala HOM05D003529 ORTHO05D004106 9.7e-06 53.9 110 40.0


User provided reference genes

Program Settings