Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06948 Brassica carinata HOM05D005715 ORTHO05D007160 1.5e-203 712.6 359 100.0
C03p74190 Brassica napus HOM05D005715 ORTHO05D007160 9.7e-150 533.9 367 76.8
BraA08t34576Z Brassica rapa HOM05D005715 ORTHO05D007160 1.6e-149 533.1 368 78.3
BcaC01g01604 Brassica carinata HOM05D005715 ORTHO05D007160 3.7e-149 531.9 367 76.8
Thhalv10009308m.g Eutrema salsugineum HOM05D005715 ORTHO05D007160 1.2e-147 526.9 377 75.9
A08p26250 Brassica napus HOM05D005715 ORTHO05D007160 2.0e-147 526.2 369 77.5
Sp1g23710 Schrenkiella parvula HOM05D005715 ORTHO05D007160 6.7e-143 511.1 368 73.6
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 1.5e-142 510.0 358 76.8
AL1G40890 Arabidopsis lyrata HOM05D005715 ORTHO05D007160 4.3e-142 508.4 373 74.3
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 2.4e-140 502.7 359 76.3
Carub.0001s2602 Capsella rubella HOM05D005715 ORTHO05D007160 2.4e-140 502.7 377 73.2
AT1G27461 Arabidopsis thaliana HOM05D005715 ORTHO05D007160 6.9e-140 501.1 359 75.5
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 3.8e-138 495.4 359 75.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 8.5e-138 494.2 359 75.2
BcaC05g26566 Brassica carinata HOM05D005715 ORTHO05D007160 5.5e-137 491.5 359 74.9
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 1.3e-133 480.3 334 77.2
CARHR027070 Cardamine hirsuta HOM05D005715 ORTHO05D007160 3.7e-125 452.2 368 67.1
BcaC05g26750 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-101 374.0 297 72.4
THA.LOC104825172 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 2.2e-101 373.2 362 59.9
Aa31LG7G10200 Aethionema arabicum HOM05D005715 ORTHO05D007160 2.7e-99 366.3 366 58.7
THA.LOC104825782 Tarenaya hassleriana HOM05D005715 ORTHO05D007160 1.6e-91 340.5 379 54.6
Thecc.08G087700 Theobroma cacao HOM05D005715 ORTHO05D007160 3.3e-89 332.8 379 52.5
Duzib093G0740 Durio zibethinus HOM05D005715 ORTHO05D007160 1.1e-87 327.8 385 52.2
Cpa.g.sc142.38 Carica papaya HOM05D005715 ORTHO05D007160 1.2e-86 324.3 353 53.5
QL05p065482 Quercus lobata HOM05D005715 ORTHO05D007160 1.4e-84 317.4 375 50.9
QL12p038205 Quercus lobata HOM05D005715 ORTHO05D007160 2.1e-83 313.5 375 50.7
Cfa013768 Carpinus fangiana HOM05D005715 ORTHO05D007160 1.3e-82 310.8 361 52.4
COL.COLO4_28493 Corchorus olitorius HOM05D005715 ORTHO05D007160 2.3e-82 310.1 377 50.1
RcHm_v2.0_Chr6g0309781 Rosa chinensis HOM05D005715 ORTHO05D007160 1.1e-81 307.8 378 49.5
Manes.18G047200 Manihot esculenta HOM05D005715 ORTHO05D007160 7.3e-81 305.1 385 49.6
FAN27G0384 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.2e-80 304.3 385 48.1
Lj5g0027881 Lotus japonicus HOM05D005715 ORTHO05D007160 1.6e-80 303.9 380 50.0
CiPaw.08G050600 Carya illinoinensis HOM05D005715 ORTHO05D007160 1.8e-79 300.4 376 48.4
FvH4_2g32940 Fragaria vesca HOM05D005715 ORTHO05D007160 5.2e-79 298.9 385 48.1
Potri.002G117700 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.2e-79 298.9 375 48.3
Eucgr.F02242 Eucalyptus grandis HOM05D005715 ORTHO05D007160 1.5e-78 297.4 381 47.5
FAN20G0332 Fragaria x ananassa HOM05D005715 ORTHO05D007160 1.5e-78 297.4 380 48.7
Dinv44948 Davidia involucrata HOM05D005715 ORTHO05D007160 3.4e-78 296.2 359 48.2
FAN24G0894 Fragaria x ananassa HOM05D005715 ORTHO05D007160 7.5e-78 295.0 382 48.4
CSS0034937 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.7e-77 293.9 371 48.5
CSS0039747 Camellia sinensis var. sinensis HOM05D005715 ORTHO05D007160 1.7e-77 293.9 371 48.5
Haze_22425 Corylus avellana HOM05D005715 ORTHO05D007160 4.9e-77 292.4 360 50.3
FAN15G0086 Fragaria x ananassa HOM05D005715 ORTHO05D007160 6.4e-77 292.0 384 47.7
Ciclev10001560m.g Citrus clementina HOM05D005715 ORTHO05D007160 8.3e-77 291.6 390 46.2
Phvul.001G028500 Phaseolus vulgaris HOM05D005715 ORTHO05D007160 1.4e-76 290.8 377 48.3
Psat6g017920 Pisum sativum HOM05D005715 ORTHO05D007160 4.1e-76 289.3 372 50.8
CANSAT25G3138 Cannabis sativa HOM05D005715 ORTHO05D007160 1.2e-75 287.7 375 47.2
Gohir.A05G210700 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.2e-75 287.7 367 49.9
Gorai.009G220700 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.6e-75 287.3 367 49.9
Prupe.1G421700 Prunus persica HOM05D005715 ORTHO05D007160 1.0e-74 284.6 399 46.4
BcaC05g26749 Brassica carinata HOM05D005715 ORTHO05D007160 1.3e-74 284.3 240 71.2
Glyma.14G089033 Glycine max HOM05D005715 ORTHO05D007160 1.7e-74 283.9 378 48.4
MD08G1080800 Malus domestica HOM05D005715 ORTHO05D007160 1.7e-74 283.9 370 48.4
Rhsim06G0062800 Rhododendron simsii HOM05D005715 ORTHO05D007160 1.7e-74 283.9 345 52.2
Potri.014G015300 Populus trichocarpa HOM05D005715 ORTHO05D007160 5.1e-74 282.3 377 46.4
Glyma.17G234300 Glycine max HOM05D005715 ORTHO05D007160 4.3e-73 279.3 374 47.9
Medtr1g017920 Medicago truncatula HOM05D005715 ORTHO05D007160 6.2e-72 275.4 368 50.5
Lalb_Chr22g0355691 Lupinus albus HOM05D005715 ORTHO05D007160 1.8e-71 273.9 380 46.1
PGR031G1686 Punica granatum HOM05D005715 ORTHO05D007160 1.8e-71 273.9 399 46.9
Gohir.D05G214000 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.0e-71 272.7 377 48.0
Sabra02G0092400 Salix brachista HOM05D005715 ORTHO05D007160 4.0e-71 272.7 368 47.0
ClCG05G020660 Citrullus lanatus HOM05D005715 ORTHO05D007160 2.9e-69 266.5 365 46.3
Actinidia10205 Actinidia chinensis HOM05D005715 ORTHO05D007160 2.1e-67 260.4 362 45.3
Dinv39217 Davidia involucrata HOM05D005715 ORTHO05D007160 4.6e-67 259.2 336 48.2
TWI56G0918 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 7.8e-67 258.5 378 45.2
Gorai.010G026200 Gossypium raimondii HOM05D005715 ORTHO05D007160 1.0e-66 258.1 354 46.3
PGSC0003DMG400010622 Solanum tuberosum HOM05D005715 ORTHO05D007160 1.9e-65 253.8 358 44.7
Lalb_Chr24g0399501 Lupinus albus HOM05D005715 ORTHO05D007160 2.5e-65 253.4 373 45.0
Solyc04g077740.1 Solanum lycopersicum HOM05D005715 ORTHO05D007160 2.5e-65 253.4 363 43.3
Lj4C71T16 Lonicera japonica HOM05D005715 ORTHO05D007160 3.3e-65 253.1 368 45.1
Sopen04g031360 Solanum pennellii HOM05D005715 ORTHO05D007160 3.3e-65 253.1 363 43.3
MELO3C016824.2 Cucumis melo HOM05D005715 ORTHO05D007160 1.3e-64 251.1 361 46.3
TWI12G0318 Tripterygium wilfordii HOM05D005715 ORTHO05D007160 1.3e-64 251.1 381 43.8
Gohir.D06G021600 Gossypium hirsutum HOM05D005715 ORTHO05D007160 4.0e-63 246.1 356 44.9
Lalb_Chr14g0368141 Lupinus albus HOM05D005715 ORTHO05D007160 6.9e-63 245.4 378 43.7
Peaxi162Scf00081g00232 Petunia axillaris HOM05D005715 ORTHO05D007160 6.9e-63 245.4 349 45.3
Nitab4.5_0003725g0050 Nicotiana tabacum HOM05D005715 ORTHO05D007160 2.0e-62 243.8 361 42.9
TAR628G0320 Trochodendron aralioides HOM05D005715 ORTHO05D007160 5.8e-62 242.3 365 44.4
VMungo0647G0294 Vigna mungo HOM05D005715 ORTHO05D007160 5.8e-62 242.3 446 38.3
Nitab4.5_0000497g0110 Nicotiana tabacum HOM05D005715 ORTHO05D007160 7.6e-62 241.9 358 42.5
CAN.G724.34 Capsicum annuum HOM05D005715 ORTHO05D007160 3.8e-61 239.6 364 42.6
arahy.Tifrunner.gnm1.ann1.42CAD1 Arachis hypogaea HOM05D005715 ORTHO05D007160 7.1e-60 235.3 447 38.9
Gohir.A06G024500 Gossypium hirsutum HOM05D005715 ORTHO05D007160 1.0e-58 231.5 366 43.2
MSTRG.24379 Avicennia marina HOM05D005715 ORTHO05D007160 1.3e-58 231.1 368 42.9
HanXRQChr15g0495001 Helianthus annuus HOM05D005715 ORTHO05D007160 2.3e-58 230.3 378 39.7
BcaC01g01609 Brassica carinata HOM05D005715 ORTHO05D007160 5.1e-58 229.2 129 82.2
Oeu053093.1 Olea europaea HOM05D005715 ORTHO05D007160 6.6e-58 228.8 358 42.2
SHI08419 Sapria himalayana HOM05D005715 ORTHO05D000023 4.3e-57 226.1 324 44.4
Oeu053625.1 Olea europaea HOM05D005715 ORTHO05D007160 2.8e-56 223.4 354 41.0
Sed0010783 Sechium edule HOM05D005715 ORTHO05D007160 1.4e-55 221.1 352 42.3
arahy.Tifrunner.gnm1.ann1.3URM83 Arachis hypogaea HOM05D005715 ORTHO05D009860 2.4e-55 220.3 434 38.7
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 4.0e-55 219.5 347 42.4
Lj1g0016682 Lotus japonicus HOM05D005715 ORTHO05D007160 6.9e-55 218.8 337 43.0
Nn5g30612 Nelumbo nucifera HOM05D005715 ORTHO05D007160 2.6e-54 216.9 379 39.1
TPR.G825 Trifolium pratense HOM05D005715 ORTHO05D007160 2.6e-54 216.9 238 54.6
Nn1g04537 Nelumbo nucifera HOM05D005715 ORTHO05D007160 5.8e-54 215.7 379 39.8
EL10Ac1g02368 Beta vulgaris HOM05D005715 ORTHO05D007160 1.4e-52 211.1 362 40.6
MSTRG.22219 Avicennia marina HOM05D005715 ORTHO05D007160 1.2e-51 208.0 369 40.4
Sc02g0007950 Simmondsia chinensis HOM05D005715 ORTHO05D007160 1.8e-50 204.1 340 39.7
Ah.05g167050 Amaranthus hybridus HOM05D005715 ORTHO05D007160 2.5e-49 200.3 361 40.7
MBI16_g02456_MAGBIO Magnolia biondii HOM05D005715 ORTHO05D007160 1.6e-48 197.6 343 40.5
CsaV3_4G035110 Cucumis sativus L. HOM05D005715 ORTHO05D007160 2.8e-48 196.8 211 52.1
Lj4P757T25 Lonicera japonica HOM05D005715 ORTHO05D007160 6.2e-48 195.7 348 40.2
ECA232G0180 Erigeron canadensis HOM05D005715 ORTHO05D007160 1.8e-47 194.1 362 38.4
PSO541G4157 Papaver somniferum HOM05D005715 ORTHO05D007160 4.0e-47 193.0 369 37.4
Aqoxy6G02590 Aquilegia oxysepala HOM05D005715 ORTHO05D007160 9.0e-47 191.8 358 37.7
ATR0739G069 Amborella trichopoda HOM05D005715 ORTHO05D007160 1.4e-44 184.5 375 38.7
PSO675G4043 Papaver somniferum HOM05D005715 ORTHO05D007160 1.4e-44 184.5 362 36.7
SGA_v2.0_scaffold28G11837 Striga asiatica HOM05D005715 ORTHO05D007160 2.1e-43 180.6 331 38.4
AUR62022469 Chenopodium quinoa HOM05D005715 ORTHO05D007160 4.6e-43 179.5 185 50.8
DCAR_012819 Daucus carota HOM05D005715 ORTHO05D007160 7.9e-43 178.7 341 37.8
Hma1.2p1_0819F.1_g223600 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 7.9e-43 178.7 248 46.0
Hma1.2p1_3250F.1_g334460 Hydrangea macrophylla HOM05D005715 ORTHO05D007160 1.8e-42 177.6 247 45.7
Zm00001eb325870 Zea mays HOM05D005715 ORTHO05D007160 6.7e-42 175.6 339 36.0
AUR62037422 Chenopodium quinoa HOM05D005715 ORTHO05D007160 2.8e-40 170.2 185 49.2
Sed0026939 Sechium edule HOM05D005715 ORTHO05D007160 4.8e-40 169.5 214 44.9
DCAR_008858 Daucus carota HOM05D005715 ORTHO05D007160 3.8e-37 159.8 338 34.9
Os07g0585700 Oryza sativa ssp. japonica HOM05D005715 ORTHO05D007160 1.4e-36 157.9 353 33.7
Zm00001eb108020 Zea mays HOM05D005715 ORTHO05D007160 1.2e-35 154.8 338 35.8
SGA_v2.0_scaffold152G36807 Striga asiatica HOM05D005715 ORTHO05D007160 6.7e-34 149.1 326 35.9
SalBow2G0154 Salvia bowleyana HOM05D005715 ORTHO05D007160 8.7e-34 148.7 220 42.7
HPP92_024906 Vanilla planifolia HOM05D005715 ORTHO05D007160 7.4e-33 145.6 200 41.5
C03p73810 Brassica napus HOM05D005715 ORTHO05D007160 1.9e-28 131.0 92 67.4
GSVIVG01009335001 Vitis vinifera HOM05D005715 ORTHO05D007160 3.2e-28 130.2 295 35.9
unitig_744.g24126 Utricularia gibba HOM05D005715 ORTHO05D007160 1.0e-26 125.2 348 32.2
Duzib041G0674 Durio zibethinus HOM05D005715 ORTHO05D007160 1.8e-26 124.4 123 55.3
unitig_21.g20630 Utricularia gibba HOM05D005715 ORTHO05D007160 8.2e-24 115.5 184 42.4
Mapoly0094s0025 Marchantia polymorpha HOM05D005715 ORTHO05D007160 1.3e-16 91.7 153 36.6
SEGI_17393 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 3.1e-15 87.0 161 37.9
TPR.G12997 Trifolium pratense HOM05D005715 ORTHO05D007160 4.1e-15 86.7 132 48.5
SEGI_33265 Sequoiadendron giganteum HOM05D005715 ORTHO05D007160 5.3e-15 86.3 159 37.1
Zm00001eb020940 Zea mays HOM05D005715 ORTHO05D007160 7.0e-15 85.9 189 33.3
Pp3c7_20380 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.3e-13 81.6 156 30.8
Pp3c11_8450 Physcomitrium patens HOM05D005715 ORTHO05D007160 4.2e-12 76.6 162 30.2
Pp3c7_18640 Physcomitrium patens HOM05D005715 ORTHO05D007160 5.5e-12 76.3 180 29.4
ATR0609G089 Amborella trichopoda HOM05D001735 ORTHO05D001640 1.6e-11 74.7 345 26.7
Pp3c11_8920 Physcomitrium patens HOM05D005715 ORTHO05D007160 1.6e-11 74.7 179 27.4
Migut.N02788 Erythranthe guttata HOM05D005715 ORTHO05D007160 8.0e-11 72.4 142 41.5
BolC3t19673H Brassica oleracea HOM05D005715 ORTHO05D007160 1.7e-08 64.7 42 83.3
PSO170G3003 Papaver somniferum HOM05D001735 ORTHO05D001640 2.0e-06 57.8 164 28.0
PSO063G5781 Papaver somniferum HOM05D001735 ORTHO05D001640 2.6e-06 57.4 164 28.0
PSO063G6933 Papaver somniferum HOM05D001735 ORTHO05D001640 2.6e-06 57.4 164 28.0
PSO210G1866 Papaver somniferum HOM05D001735 ORTHO05D001640 2.6e-06 57.4 164 28.0
PSO339G0231 Papaver somniferum HOM05D001735 ORTHO05D001640 2.6e-06 57.4 164 28.0
PSO063G3829 Papaver somniferum HOM05D001735 ORTHO05D001640 5.9e-06 56.2 164 27.4
PSO782G3763 Papaver somniferum HOM05D001735 ORTHO05D001640 5.9e-06 56.2 165 26.7
Peaxi162Scf00089g00038 Petunia axillaris HOM05D001735 ORTHO05D001640 5.9e-06 56.2 351 26.8


User provided reference genes

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