Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 2.2e-45 185.3 92 100.0
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 1.4e-44 182.6 92 97.8
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 1.4e-44 182.6 92 97.8
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 2.6e-43 178.3 92 95.7
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 2.6e-43 178.3 92 95.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 4.2e-41 171.0 92 92.4
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 4.2e-41 171.0 92 90.2
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 1.1e-38 162.9 96 86.5
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 4.4e-38 161.0 96 85.4
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.2e-37 156.8 92 82.6
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 2.7e-27 125.2 100 65.0
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 2.7e-27 125.2 100 65.0
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 2.7e-27 125.2 95 73.7
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 7.7e-27 123.6 100 64.0
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 7.7e-27 123.6 100 64.0
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 7.7e-27 123.6 100 64.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.2e-26 122.1 101 63.4
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.2e-26 122.1 108 62.0
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.5e-26 120.2 96 66.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 8.5e-26 120.2 100 64.0
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 1.5e-25 119.4 94 68.1
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 2.5e-25 118.6 103 62.1
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 8.0e-24 113.6 98 64.3
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 4.0e-23 111.3 109 57.8
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 5.2e-23 110.9 93 62.4
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 1.4e-20 102.8 88 60.2
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.3e-18 96.3 108 50.0
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 2.9e-18 95.1 111 45.9
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 8.5e-18 93.6 110 44.5
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 1.1e-17 93.2 102 48.0
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.5e-17 92.8 102 48.0
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 1.9e-17 92.4 109 45.0
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 2.5e-17 92.0 106 47.2
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 5.5e-17 90.9 103 49.5
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 9.5e-17 90.1 107 46.7
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 1.2e-16 89.7 110 44.5
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 1.2e-16 89.7 109 46.8
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.6e-16 89.4 104 47.1
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.6e-16 89.4 104 47.1
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.1e-16 89.0 112 42.9
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 2.1e-16 89.0 112 42.9
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 2.1e-16 89.0 110 43.6
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 3.6e-16 88.2 114 45.6
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 3.6e-16 88.2 104 46.2
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 4.7e-16 87.8 108 44.4
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 8.0e-16 87.0 122 42.6
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 8.0e-16 87.0 108 42.6
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 8.0e-16 87.0 108 43.5
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 8.0e-16 87.0 97 46.4
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.0e-15 86.7 107 42.1
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 1.8e-15 85.9 108 42.6
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 1.8e-15 85.9 108 44.4
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 3.0e-15 85.1 100 43.0
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 3.0e-15 85.1 98 43.9
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 5.2e-15 84.3 111 44.1
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 5.2e-15 84.3 103 44.7
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 6.8e-15 84.0 112 44.6
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 6.8e-15 84.0 103 44.7
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-14 82.8 108 42.6
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.0e-14 82.4 107 43.9
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.6e-14 82.0 109 42.2
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.6e-14 82.0 109 42.2
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.6e-14 82.0 109 42.2
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.4e-14 81.6 101 40.6
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 4.4e-14 81.3 108 45.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 4.4e-14 81.3 108 45.4
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 5.7e-14 80.9 100 40.0
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 5.7e-14 80.9 110 44.5
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 5.7e-14 80.9 108 43.5
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 7.5e-14 80.5 98 40.8
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 9.8e-14 80.1 90 45.6
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 9.8e-14 80.1 110 46.4
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 2.2e-13 79.0 106 43.4
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.8e-13 78.6 107 41.1
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 2.8e-13 78.6 107 41.1
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 3.7e-13 78.2 105 42.9
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 3.7e-13 78.2 114 43.9
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 6.3e-13 77.4 88 43.2
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 8.3e-13 77.0 103 40.8
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 8.3e-13 77.0 108 39.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 1.1e-12 76.6 116 37.9
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 1.4e-12 76.3 108 40.7
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 1.4e-12 76.3 119 40.3
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 3.1e-12 75.1 107 42.1
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 3.1e-12 75.1 96 41.7
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 4.1e-12 74.7 110 39.1
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.1e-12 74.7 111 43.2
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 4.1e-12 74.7 110 41.8
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.2e-11 73.2 116 35.3
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-11 73.2 102 42.2
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 1.2e-11 73.2 102 42.2
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.2e-11 73.2 107 38.3
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 1.2e-11 73.2 108 41.7
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 1.6e-11 72.8 111 42.3
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 1.6e-11 72.8 107 41.1
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 1.6e-11 72.8 87 46.0
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 2.0e-11 72.4 104 38.5
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 2.0e-11 72.4 86 45.3
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 2.7e-11 72.0 116 37.1
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 2.7e-11 72.0 123 37.4
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 3.5e-11 71.6 116 37.1
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 3.5e-11 71.6 92 42.4
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 3.5e-11 71.6 106 36.8
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.5e-11 71.2 108 38.9
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 4.5e-11 71.2 105 41.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 4.5e-11 71.2 123 37.4
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 7.8e-11 70.5 105 39.0
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 7.8e-11 70.5 105 41.9
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.0e-10 70.1 108 38.0
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 1.0e-10 70.1 51 54.9
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.0e-10 70.1 108 41.7
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 1.3e-10 69.7 95 41.1
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 2.9e-10 68.6 104 39.4
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 2.9e-10 68.6 51 52.9
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 3.8e-10 68.2 106 39.6
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.8e-10 68.2 104 40.4
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 5.0e-10 67.8 91 46.2
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 5.0e-10 67.8 97 42.3
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 6.6e-10 67.4 86 40.7
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 6.6e-10 67.4 104 39.4
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 8.6e-10 67.0 93 38.7
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 1.1e-09 66.6 107 39.3
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 1.1e-09 66.6 51 51.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 4.3e-09 64.7 108 41.7
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.2e-08 63.2 101 33.7
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.6e-08 62.8 110 36.4
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.8e-08 62.0 114 37.7
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 3.6e-08 61.6 98 40.8
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 3.6e-08 61.6 99 35.4
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 8.0e-08 60.5 112 40.2
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.0e-07 60.1 100 40.0
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 1.4e-07 59.7 114 34.2
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.3e-07 58.9 107 37.4
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 6.8e-07 57.4 74 41.9
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 1.2e-06 56.6 101 34.7
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 1.2e-06 56.6 53 47.2
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 4.4e-06 54.7 91 38.5
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 7.5e-06 53.9 101 35.6


User provided reference genes

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