Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06891 Brassica carinata HOM05D005892 ORTHO05D007364 5.3e-229 797.3 406 100.0
BolC3t16654H Brassica oleracea HOM05D005892 ORTHO05D007364 2.0e-228 795.4 406 99.8
C03p43860 Brassica napus HOM05D005892 ORTHO05D007364 1.4e-226 789.3 406 99.0
BraA03t12793Z Brassica rapa HOM05D005892 ORTHO05D007364 1.9e-210 735.7 404 93.1
A03p36220 Brassica napus HOM05D005892 ORTHO05D007364 1.3e-206 723.0 406 92.1
Sp3g07480 Schrenkiella parvula HOM05D005892 ORTHO05D007364 3.1e-197 691.8 406 87.4
CARHR083520 Cardamine hirsuta HOM05D005892 ORTHO05D007364 5.2e-192 674.5 406 84.7
AL3G20290 Arabidopsis lyrata HOM05D005892 ORTHO05D007364 2.6e-191 672.2 406 84.7
BraA05t22764Z Brassica rapa HOM05D005892 ORTHO05D007364 3.7e-190 668.3 400 85.8
BolC5t34536H Brassica oleracea HOM05D005892 ORTHO05D007364 1.1e-189 666.8 406 85.0
A05p39800 Brassica napus HOM05D005892 ORTHO05D007364 7.0e-189 664.1 400 85.8
C05p58840 Brassica napus HOM05D005892 ORTHO05D007364 9.1e-189 663.7 406 84.7
Thhalv10020833m.g Eutrema salsugineum HOM05D005892 ORTHO05D007364 5.0e-187 657.9 415 84.1
Carub.0003s0830 Capsella rubella HOM05D005892 ORTHO05D007364 1.0e-179 633.6 411 81.0
AT3G09180 Arabidopsis thaliana HOM05D005892 ORTHO05D007364 6.4e-166 587.8 358 84.6
THA.LOC104816617 Tarenaya hassleriana HOM05D005892 ORTHO05D007364 2.3e-160 569.3 420 73.8
Aa31LG3G1670 Aethionema arabicum HOM05D005892 ORTHO05D007364 3.3e-146 522.3 345 79.7
Cpa.g.sc35.59 Carica papaya HOM05D005892 ORTHO05D007364 1.6e-137 493.4 429 64.6
RcHm_v2.0_Chr3g0475881 Rosa chinensis HOM05D005892 ORTHO05D007364 2.6e-135 486.1 393 66.7
Gorai.002G235400 Gossypium raimondii HOM05D005892 ORTHO05D007364 1.3e-134 483.8 400 65.2
Prupe.7G094800 Prunus persica HOM05D005892 ORTHO05D007364 1.7e-134 483.4 414 63.8
MD14G1038600 Malus domestica HOM05D005892 ORTHO05D007364 2.2e-134 483.0 398 64.6
Gohir.A01G201600 Gossypium hirsutum HOM05D005892 ORTHO05D007364 8.4e-134 481.1 398 65.3
FAN14G3222 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.1e-133 480.7 389 66.1
FAN05G3301 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.4e-133 480.3 389 65.8
Manes.08G033200 Manihot esculenta HOM05D005892 ORTHO05D007364 2.4e-133 479.6 414 63.0
Gohir.D01G191500 Gossypium hirsutum HOM05D005892 ORTHO05D007364 3.2e-133 479.2 400 64.8
Atru.chr8.1369 Acer truncatum HOM05D005892 ORTHO05D007364 4.2e-133 478.8 409 62.6
Thecc.05G104100 Theobroma cacao HOM05D005892 ORTHO05D007364 5.4e-133 478.4 400 65.8
Lj3A860G48 Lonicera japonica HOM05D005892 ORTHO05D007364 3.5e-132 475.7 421 61.0
Cfa020027 Carpinus fangiana HOM05D005892 ORTHO05D007364 3.9e-131 472.2 400 62.8
COL.COLO4_29579 Corchorus olitorius HOM05D005892 ORTHO05D007364 6.7e-131 471.5 398 64.6
Ciclev10011749m.g Citrus clementina HOM05D005892 ORTHO05D007364 1.5e-130 470.3 415 61.2
CSS0032108 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 3.3e-130 469.2 399 62.2
Duzib093G2092 Durio zibethinus HOM05D005892 ORTHO05D007364 2.1e-129 466.5 397 63.5
GSVIVG01029940001 Vitis vinifera HOM05D005892 ORTHO05D007364 4.8e-129 465.3 425 60.2
CiPaw.10G017200 Carya illinoinensis HOM05D005892 ORTHO05D007364 1.4e-128 463.8 418 60.5
Potri.016G070700 Populus trichocarpa HOM05D005892 ORTHO05D007364 5.8e-127 458.4 411 59.6
Eucgr.K02619 Eucalyptus grandis HOM05D005892 ORTHO05D007364 2.2e-126 456.4 403 60.5
Peaxi162Scf01139g00002 Petunia axillaris HOM05D005892 ORTHO05D007364 4.9e-126 455.3 401 59.9
PGR142G3547 Punica granatum HOM05D005892 ORTHO05D007364 4.9e-126 455.3 416 60.1
Hma1.2p1_1525F.1_g288970 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 6.4e-126 454.9 367 65.1
TAR633G2239 Trochodendron aralioides HOM05D005892 ORTHO05D007364 5.5e-125 451.8 413 58.8
Nitab4.5_0005476g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 1.3e-123 447.2 368 62.8
DCAR_026818 Daucus carota HOM05D005892 ORTHO05D007364 2.3e-123 446.4 410 58.5
Nitab4.5_0007165g0010 Nicotiana tabacum HOM05D005892 ORTHO05D007364 5.1e-123 445.3 368 62.5
QL07p036776 Quercus lobata HOM05D005892 ORTHO05D007364 5.1e-123 445.3 457 54.7
Glyma.19G026300 Glycine max HOM05D005892 ORTHO05D007364 8.7e-123 444.5 396 60.4
Sed0021278 Sechium edule HOM05D005892 ORTHO05D007364 1.9e-122 443.4 397 60.7
Sabra16G0070800 Salix brachista HOM05D005892 ORTHO05D007364 2.5e-122 443.0 473 53.1
Glyma.03G201900 Glycine max HOM05D005892 ORTHO05D007364 5.6e-122 441.8 399 60.4
Migut.E00525 Erythranthe guttata HOM05D005892 ORTHO05D007364 7.4e-122 441.4 397 60.2
Ca_25808_v3 Cicer arietinum L. HOM05D005892 ORTHO05D007364 1.3e-121 440.7 389 59.6
Lj1g0008745 Lotus japonicus HOM05D005892 ORTHO05D007364 2.1e-121 439.9 421 57.5
Cc11_g05910 Coffea canephora HOM05D005892 ORTHO05D007364 2.8e-121 439.5 367 63.8
Lalb_Chr20g0111381 Lupinus albus HOM05D005892 ORTHO05D007364 4.8e-121 438.7 395 59.0
PGSC0003DMG400006864 Solanum tuberosum HOM05D005892 ORTHO05D007364 4.8e-121 438.7 401 57.6
Phvul.001G195400 Phaseolus vulgaris HOM05D005892 ORTHO05D007364 1.1e-120 437.6 392 59.9
HanXRQChr16g0527301 Helianthus annuus HOM05D005892 ORTHO05D007364 3.1e-120 436.0 393 59.0
SalBow2G2452 Salvia bowleyana HOM05D005892 ORTHO05D007364 3.1e-120 436.0 418 57.2
ClCG10G018360 Citrullus lanatus HOM05D005892 ORTHO05D007364 5.3e-120 435.3 425 56.9
PSO384G1009 Papaver somniferum HOM05D005892 ORTHO05D007364 5.3e-120 435.3 429 58.3
Sopen01g034280 Solanum pennellii HOM05D005892 ORTHO05D007364 5.3e-120 435.3 405 56.3
Lsat_1_v5_gn_4_22820 Lactuca sativa HOM05D005892 ORTHO05D007364 9.0e-120 434.5 402 58.0
FvH4_6g20290 Fragaria vesca HOM05D005892 ORTHO05D007364 1.2e-119 434.1 339 69.3
PSO339G5192 Papaver somniferum HOM05D005892 ORTHO05D007364 1.2e-119 434.1 429 57.8
MSTRG.13644 Avicennia marina HOM05D005892 ORTHO05D007364 2.6e-119 433.0 408 57.6
Solyc01g087230.3 Solanum lycopersicum HOM05D005892 ORTHO05D007364 4.5e-119 432.2 405 55.8
Medtr7g106200 Medicago truncatula HOM05D005892 ORTHO05D007364 5.8e-119 431.8 416 57.0
Actinidia12433 Actinidia chinensis HOM05D005892 ORTHO05D007364 1.7e-118 430.3 364 64.8
arahy.Tifrunner.gnm1.ann1.EHSJ8W Arachis hypogaea HOM05D005892 ORTHO05D007364 2.2e-118 429.9 394 58.6
ECA234G1824 Erigeron canadensis HOM05D005892 ORTHO05D007364 1.6e-116 423.7 393 57.0
BcaB04g18552 Brassica carinata HOM05D005892 ORTHO05D007364 2.1e-116 423.3 403 60.0
Rhsim09G0086500 Rhododendron simsii HOM05D005892 ORTHO05D007364 3.0e-115 419.5 410 57.6
Ah.10g030320 Amaranthus hybridus HOM05D005892 ORTHO05D007364 5.1e-115 418.7 392 59.2
EL10Ac9g21147 Beta vulgaris HOM05D005892 ORTHO05D007364 9.7e-114 414.5 433 53.8
Psat3g029200 Pisum sativum HOM05D005892 ORTHO05D007364 3.7e-113 412.5 389 57.3
Zm00001eb156320 Zea mays HOM05D005892 ORTHO05D007364 6.3e-113 411.8 389 57.3
Nn2g14624 Nelumbo nucifera HOM05D005892 ORTHO05D007364 9.0e-112 407.9 353 60.3
Os01g0263500 Oryza sativa ssp. japonica HOM05D005892 ORTHO05D007364 9.0e-112 407.9 388 56.7
FAN09G4751 Fragaria x ananassa HOM05D005892 ORTHO05D007364 2.0e-111 406.8 326 68.7
AUR62036522 Chenopodium quinoa HOM05D005892 ORTHO05D007364 5.9e-111 405.2 410 53.7
AUR62042262 Chenopodium quinoa HOM05D005892 ORTHO05D007364 1.7e-110 403.7 382 56.0
HPP92_001371 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.8e-110 402.5 399 55.6
CAN.G219.4 Capsicum annuum HOM05D005892 ORTHO05D007364 8.5e-110 401.4 346 60.1
Aqoxy1G00010 Aquilegia oxysepala HOM05D005892 ORTHO05D007364 7.2e-109 398.3 431 52.0
CsaV3_3G037930 Cucumis sativus L. HOM05D005892 ORTHO05D007364 9.4e-109 397.9 374 58.8
CDE02G2672 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 4.6e-108 395.6 409 55.7
HPP92_001347 Vanilla planifolia HOM05D005892 ORTHO05D007364 3.0e-107 392.9 367 57.8
Haze_20187 Corylus avellana HOM05D005892 ORTHO05D007364 7.4e-106 388.3 443 53.3
Hma1.2p1_1525F.1_g288980 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 4.8e-105 385.6 326 60.7
Sabra16G0073000 Salix brachista HOM05D005892 ORTHO05D007364 5.3e-104 382.1 440 52.3
MELO3C009537.2 Cucumis melo HOM05D005892 ORTHO05D007364 4.5e-103 379.0 413 53.5
MBI19_g09306_MAGBIO Magnolia biondii HOM05D005892 ORTHO05D007364 3.8e-102 375.9 417 53.0
HPP92_001441 Vanilla planifolia HOM05D005892 ORTHO05D007364 5.0e-102 375.6 399 52.9
VMungo1383G1945 Vigna mungo HOM05D005892 ORTHO05D007364 2.1e-100 370.2 343 59.5
SGA_v2.0_scaffold65G22109 Striga asiatica HOM05D005892 ORTHO05D007364 1.4e-99 367.5 396 53.3
Hund10710 Selenicereus undatus HOM05D005892 ORTHO05D007364 1.7e-97 360.5 325 61.8
FAN05G1366 Fragaria x ananassa HOM05D005892 ORTHO05D007364 1.8e-96 357.1 371 59.0
CDE04G0639 Ceratophyllum demersum HOM05D005892 ORTHO05D007364 5.0e-94 349.0 406 51.0
unitig_52.g17290 Utricularia gibba HOM05D005892 ORTHO05D007364 5.0e-94 349.0 349 57.9
FAN05G3684 Fragaria x ananassa HOM05D005892 ORTHO05D007364 4.2e-93 345.9 282 68.4
Sc07g0007600 Simmondsia chinensis HOM05D005892 ORTHO05D007364 1.6e-92 344.0 284 65.5
arahy.Tifrunner.gnm1.ann1.PAXQ04 Arachis hypogaea HOM05D005892 ORTHO05D007364 2.1e-92 343.6 332 57.8
Zm00001eb348930 Zea mays HOM05D005892 ORTHO05D007364 8.0e-92 341.7 321 57.3
TPR.G14083 Trifolium pratense HOM05D005892 ORTHO05D007364 2.3e-91 340.1 377 52.5
FAN05G0385 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.3e-90 336.3 281 67.3
ATR0068G118 Amborella trichopoda HOM05D005892 ORTHO05D007364 1.7e-89 334.0 450 48.4
TAR633G0738 Trochodendron aralioides HOM05D005892 ORTHO05D007364 1.3e-86 324.3 294 60.2
FAN02G1987 Fragaria x ananassa HOM05D005892 ORTHO05D007364 3.6e-76 289.7 362 48.1
RcHm_v2.0_Chr1g0331121 Rosa chinensis HOM05D005892 ORTHO05D007364 3.3e-61 240.0 204 61.8
Mapoly0090s0009 Marchantia polymorpha HOM05D005892 ORTHO05D007364 1.8e-59 234.2 378 39.7
Pp3c15_4850 Physcomitrium patens HOM05D005892 ORTHO05D007364 4.9e-57 226.1 434 35.9
RcHm_v2.0_Chr1g0331111 Rosa chinensis HOM05D005892 ORTHO05D007364 3.5e-47 193.4 135 75.6
Peaxi162Scf00684g00585 Petunia axillaris HOM05D005892 ORTHO05D007364 6.0e-47 192.6 318 39.9
AagrBONN_evm.TU.Sc2ySwM_228.2745 Anthoceros agrestis HOM05D005892 ORTHO05D007364 1.7e-46 191.0 404 33.2
Nn2g14691 Nelumbo nucifera HOM05D005892 ORTHO05D007364 1.2e-44 184.9 137 70.1
Atru.chr9.699 Acer truncatum HOM05D005892 ORTHO05D007364 3.7e-41 173.3 123 71.5
BcaC05g29638 Brassica carinata HOM05D005892 ORTHO05D007364 2.4e-32 144.1 113 75.2
Aa31sc80G50 Aethionema arabicum HOM05D005892 ORTHO05D007364 1.8e-27 127.9 88 75.0
Atru.chr9.700 Acer truncatum HOM05D005892 ORTHO05D007364 1.0e-22 112.1 102 57.8
SEGI_21584 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 5.4e-16 89.7 113 40.7
Hma1.2p1_1525F.1_g288960 Hydrangea macrophylla HOM05D005892 ORTHO05D007364 9.3e-16 89.0 90 60.0
CSS0000115 Camellia sinensis var. sinensis HOM05D005892 ORTHO05D007364 1.6e-15 88.2 88 56.8
HPP92_019993 Vanilla planifolia HOM05D002096 ORTHO05D002203 3.5e-15 87.0 153 37.3
TPR.G35563 Trifolium pratense HOM05D005892 ORTHO05D007364 2.5e-13 80.9 64 57.8
SEGI_07863 Sequoiadendron giganteum HOM05D005892 ORTHO05D007364 1.1e-08 65.5 106 39.6
CBR_g10855 Chara braunii HOM05D005892 ORTHO05D007364 2.7e-07 60.8 167 28.7
Aa31sc80G40 Aethionema arabicum HOM05D005892 ORTHO05D007364 5.1e-06 56.6 88 44.3


User provided reference genes

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