Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06887 Brassica carinata HOM05D006102 ORTHO05D007550 1.8e-47 192.2 92 100.0
BcaB01g02181 Brassica carinata HOM05D006102 ORTHO05D007550 1.6e-27 125.9 70 90.0
BcaC01g04890 Brassica carinata HOM05D006102 ORTHO05D007550 1.6e-27 125.9 70 90.0
A03p27130 Brassica napus HOM05D006102 ORTHO05D007550 1.6e-27 125.9 70 90.0
C03p32590 Brassica napus HOM05D006102 ORTHO05D007550 1.6e-27 125.9 70 90.0
BolC3t15598H Brassica oleracea HOM05D006102 ORTHO05D007550 1.6e-27 125.9 70 90.0
BraA03t11926Z Brassica rapa HOM05D006102 ORTHO05D007550 1.6e-27 125.9 70 90.0
AT4G00060 Arabidopsis thaliana HOM05D006102 ORTHO05D007550 2.2e-26 122.1 70 85.7
Thhalv10028362m.g Eutrema salsugineum HOM05D006102 ORTHO05D007550 2.2e-26 122.1 67 89.6
AL6G53450 Arabidopsis lyrata HOM05D006102 ORTHO05D007550 1.1e-25 119.8 72 81.9
Aa31LG5G130 Aethionema arabicum HOM05D006102 ORTHO05D007550 1.9e-25 119.0 70 84.3
CARHR248110 Cardamine hirsuta HOM05D006102 ORTHO05D007550 3.2e-25 118.2 69 81.2
Carub.0006s3716 Capsella rubella HOM05D006102 ORTHO05D007550 1.2e-24 116.3 67 85.1
Sp6g00130 Schrenkiella parvula HOM05D006102 ORTHO05D007550 1.6e-24 115.9 70 84.3
TWI59G0915 Tripterygium wilfordii HOM05D006102 ORTHO05D007550 6.1e-16 87.4 75 62.7
THA.LOC104801481 Tarenaya hassleriana HOM05D006102 ORTHO05D007550 1.0e-15 86.7 73 67.1
CANSAT56G2478 Cannabis sativa HOM05D006102 ORTHO05D007550 2.0e-14 82.4 63 65.1
Potri.014G066000 Populus trichocarpa HOM05D006102 ORTHO05D007550 1.3e-13 79.7 74 62.2
Sabra14G0046000 Salix brachista HOM05D006102 ORTHO05D007550 2.8e-13 78.6 74 60.8
Atru.chr5.237 Acer truncatum HOM05D006102 ORTHO05D007550 8.3e-13 77.0 74 59.5
Ciclev10018476m.g Citrus clementina HOM05D006102 ORTHO05D007550 1.1e-12 76.6 74 58.1
Psat0s3685g0040 Pisum sativum HOM05D006102 ORTHO05D007550 1.8e-12 75.9 74 58.1
Cfa011148 Carpinus fangiana HOM05D006102 ORTHO05D007550 2.4e-12 75.5 71 60.6
Manes.05G049400 Manihot esculenta HOM05D006102 ORTHO05D007550 3.1e-12 75.1 74 59.5
Solyc01g090860.3 Solanum lycopersicum HOM05D006102 ORTHO05D007550 4.1e-12 74.7 85 51.8
Sopen01g036600 Solanum pennellii HOM05D006102 ORTHO05D007550 4.1e-12 74.7 85 51.8
ClCG05G000200 Citrullus lanatus HOM05D006102 ORTHO05D007550 5.4e-12 74.3 71 57.7
MELO3C005957.2 Cucumis melo HOM05D006102 ORTHO05D007550 5.4e-12 74.3 71 57.7
Eucgr.D02494 Eucalyptus grandis HOM05D006102 ORTHO05D007550 5.4e-12 74.3 51 76.5
CAN.G1872.3 Capsicum annuum HOM05D006102 ORTHO05D007550 7.0e-12 73.9 60 66.7
Prupe.2G137200 Prunus persica HOM05D006102 ORTHO05D007550 7.0e-12 73.9 63 61.9
CiPaw.14G025500 Carya illinoinensis HOM05D006102 ORTHO05D007550 9.2e-12 73.6 71 60.6
MD07G1115100 Malus domestica HOM05D006102 ORTHO05D007550 9.2e-12 73.6 63 60.3
Thecc.01G384200 Theobroma cacao HOM05D006102 ORTHO05D007550 9.2e-12 73.6 74 58.1
CsaV3_3G007350 Cucumis sativus L. HOM05D006102 ORTHO05D007550 1.2e-11 73.2 71 57.7
PGR004G2833 Punica granatum HOM05D006102 ORTHO05D007550 1.2e-11 73.2 68 61.8
arahy.Tifrunner.gnm1.ann1.1V3LDQ Arachis hypogaea HOM05D006102 ORTHO05D007550 1.6e-11 72.8 71 56.3
arahy.Tifrunner.gnm1.ann1.W52PF9 Arachis hypogaea HOM05D006102 ORTHO05D007550 1.6e-11 72.8 71 56.3
Sed0013724 Sechium edule HOM05D006102 ORTHO05D007550 2.0e-11 72.4 70 57.1
Aqoxy7G00755 Aquilegia oxysepala HOM05D006102 ORTHO05D007550 2.7e-11 72.0 81 51.9
Migut.N01612 Erythranthe guttata HOM05D006102 ORTHO05D007550 2.7e-11 72.0 70 57.1
Gohir.A11G078500 Gossypium hirsutum HOM05D006102 ORTHO05D007550 2.7e-11 72.0 74 56.8
Gohir.D11G083100 Gossypium hirsutum HOM05D006102 ORTHO05D007550 2.7e-11 72.0 74 56.8
Gorai.007G088700 Gossypium raimondii HOM05D006102 ORTHO05D007550 2.7e-11 72.0 74 56.8
HanXRQChr03g0093281 Helianthus annuus HOM05D006102 ORTHO05D007550 2.7e-11 72.0 40 85.0
Dinv43669 Davidia involucrata HOM05D006102 ORTHO05D007550 4.5e-11 71.2 74 56.8
FAN10G3138 Fragaria x ananassa HOM05D006102 ORTHO05D007550 4.5e-11 71.2 66 59.1
FAN10G3898 Fragaria x ananassa HOM05D006102 ORTHO05D007550 4.5e-11 71.2 66 59.1
Sc02g0002820 Simmondsia chinensis HOM05D006102 ORTHO05D007550 4.5e-11 71.2 73 57.5
VMungo0331G0964 Vigna mungo HOM05D006102 ORTHO05D007550 4.5e-11 71.2 72 58.3
DCAR_015878 Daucus carota HOM05D006102 ORTHO05D007550 5.9e-11 70.9 37 91.9
FvH4_7g11041 Fragaria vesca HOM05D006102 ORTHO05D007550 5.9e-11 70.9 66 59.1
FAN03G1880 Fragaria x ananassa HOM05D006102 ORTHO05D007550 5.9e-11 70.9 66 59.1
FAN06G2175 Fragaria x ananassa HOM05D006102 ORTHO05D007550 5.9e-11 70.9 66 59.1
FAN06G2296 Fragaria x ananassa HOM05D006102 ORTHO05D007550 5.9e-11 70.9 66 59.1
Lj3g0012088 Lotus japonicus HOM05D006102 ORTHO05D007550 5.9e-11 70.9 53 69.8
RcHm_v2.0_Chr1g0349071 Rosa chinensis HOM05D006102 ORTHO05D007550 7.8e-11 70.5 66 59.1
QL04p037175 Quercus lobata HOM05D006102 ORTHO05D007550 1.0e-10 70.1 71 57.7
QL93p0363_0004 Quercus lobata HOM05D006102 ORTHO05D007550 1.0e-10 70.1 71 57.7
ATR0317G095 Amborella trichopoda HOM05D006102 ORTHO05D007550 1.3e-10 69.7 66 60.6
COL.COLO4_12485 Corchorus olitorius HOM05D006102 ORTHO05D007550 1.3e-10 69.7 49 73.5
TPR.G4985 Trifolium pratense HOM05D006102 ORTHO05D007550 1.3e-10 69.7 71 54.9
Ca_19854_v3 Cicer arietinum L. HOM05D006102 ORTHO05D007550 1.7e-10 69.3 71 56.3
Duzib138G0330 Durio zibethinus HOM05D006102 ORTHO05D007550 1.7e-10 69.3 78 53.8
Glyma.03G032900 Glycine max HOM05D006102 ORTHO05D007550 1.7e-10 69.3 63 63.5
Hma1.2p1_0072F.1_g038370 Hydrangea macrophylla HOM05D006102 ORTHO05D007550 1.7e-10 69.3 80 52.5
HPP92_005330 Vanilla planifolia HOM05D006102 ORTHO05D007550 2.3e-10 68.9 42 73.8
GSVIVG01018154001 Vitis vinifera HOM05D006102 ORTHO05D007550 2.3e-10 68.9 74 56.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 2.9e-10 68.6 58 63.8
Rhsim07G0031600 Rhododendron simsii HOM05D006102 ORTHO05D007550 2.9e-10 68.6 74 54.1
Ah.05g173810 Amaranthus hybridus HOM05D006102 ORTHO05D007550 3.8e-10 68.2 43 79.1
Medtr4g027425 Medicago truncatula HOM05D006102 ORTHO05D007550 3.8e-10 68.2 71 54.9
CSS0002341 Camellia sinensis var. sinensis HOM05D006102 ORTHO05D007550 5.0e-10 67.8 73 54.8
Cc02_g24460 Coffea canephora HOM05D006102 ORTHO05D007550 5.0e-10 67.8 59 64.4
Phvul.010G071766 Phaseolus vulgaris HOM05D006102 ORTHO05D007550 5.0e-10 67.8 80 48.8
unitig_748.g7113 Utricularia gibba HOM05D006102 ORTHO05D007550 5.0e-10 67.8 55 65.5
EL10Ac1g00837 Beta vulgaris HOM05D006102 ORTHO05D007550 6.6e-10 67.4 43 76.7
PSO017G2680 Papaver somniferum HOM05D006102 ORTHO05D007550 6.6e-10 67.4 46 73.9
Nn1g00999 Nelumbo nucifera HOM05D006102 ORTHO05D007550 8.6e-10 67.0 80 50.0
Lalb_Chr07g0190291 Lupinus albus HOM05D006102 ORTHO05D007550 1.1e-09 66.6 40 80.0
PSO170G5751 Papaver somniferum HOM05D006102 ORTHO05D007550 1.5e-09 66.2 58 62.1
vmacro13446 Vaccinium macrocarpon HOM05D006102 ORTHO05D007550 1.9e-09 65.9 80 51.2
vmacro22440 Vaccinium macrocarpon HOM05D006102 ORTHO05D007550 1.9e-09 65.9 80 51.2
AUR62004162 Chenopodium quinoa HOM05D006102 ORTHO05D007550 2.5e-09 65.5 43 74.4
AUR62013660 Chenopodium quinoa HOM05D006102 ORTHO05D007550 2.5e-09 65.5 43 74.4
TAR375G0254 Trochodendron aralioides HOM05D006102 ORTHO05D007550 7.3e-09 63.9 87 48.3
Actinidia12183 Actinidia chinensis HOM05D006102 ORTHO05D007550 9.5e-09 63.5 37 83.8
Lsat_1_v5_gn_3_129280 Lactuca sativa HOM05D006102 ORTHO05D007550 9.5e-09 63.5 35 88.6
SGA_v2.0_scaffold11G05526 Striga asiatica HOM05D006102 ORTHO05D007550 9.5e-09 63.5 37 83.8
Hund27378 Selenicereus undatus HOM05D006102 ORTHO05D007550 2.1e-08 62.4 37 83.8
Zm00001eb274180 Zea mays HOM05D006102 ORTHO05D007550 1.8e-07 59.3 39 71.8
Peaxi162Scf00803g00223 Petunia axillaris HOM05D006102 ORTHO05D007550 6.8e-07 57.4 133 33.8


User provided reference genes

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