Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06870 Brassica carinata HOM05D006065 ORTHO05D007672 4.5e-68 261.2 135 100.0
BcaNung05355 Brassica carinata HOM05D006065 ORTHO05D007672 4.5e-68 261.2 135 100.0
BolC3t16187H Brassica oleracea HOM05D006065 ORTHO05D007672 4.5e-68 261.2 135 100.0
BraA03t12384Z Brassica rapa HOM05D006065 ORTHO05D007672 1.2e-63 246.5 138 94.9
A03p32140 Brassica napus HOM05D006065 ORTHO05D007672 3.7e-62 241.5 138 93.5
Sp6g00560 Schrenkiella parvula HOM05D006065 ORTHO05D007672 1.3e-35 153.3 144 65.3
Thhalv10029047m.g Eutrema salsugineum HOM05D006065 ORTHO05D007672 7.3e-34 147.5 145 60.0
AT4G00525 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 1.1e-32 143.7 144 62.5
Carub.0006s3674 Capsella rubella HOM05D006065 ORTHO05D007672 2.9e-30 135.6 130 58.5
AL6G52950 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 7.8e-28 127.5 133 56.4
Aa31LG5G450 Aethionema arabicum HOM05D006065 ORTHO05D007672 1.9e-26 122.9 144 50.7
THA.LOC104817023 Tarenaya hassleriana HOM05D006065 ORTHO05D007672 8.1e-25 117.5 125 51.2
CARHR248680 Cardamine hirsuta HOM05D006065 ORTHO05D007672 3.9e-19 98.6 134 44.8
Actinidia10016 Actinidia chinensis HOM05D006065 ORTHO05D007672 7.4e-18 94.4 134 40.3
Ciclev10022632m.g Citrus clementina HOM05D006065 ORTHO05D007672 7.4e-18 94.4 136 44.1
COL.COLO4_12704 Corchorus olitorius HOM05D006065 ORTHO05D007672 9.6e-18 94.0 131 41.2
AT1G01715 Arabidopsis thaliana HOM05D006065 ORTHO05D007672 8.1e-17 90.9 137 43.8
CiPaw.01G060100 Carya illinoinensis HOM05D006065 ORTHO05D007672 1.1e-16 90.5 129 41.1
Cfa003936 Carpinus fangiana HOM05D006065 ORTHO05D007672 1.4e-16 90.1 134 41.8
Dinv32472 Davidia involucrata HOM05D006065 ORTHO05D007672 3.1e-16 89.0 145 42.1
Gohir.A08G131000 Gossypium hirsutum HOM05D006065 ORTHO05D007672 4.0e-16 88.6 138 40.6
Thecc.01G360200 Theobroma cacao HOM05D006065 ORTHO05D007672 5.3e-16 88.2 136 41.2
VMungo1383G0981 Vigna mungo HOM05D006065 ORTHO05D007672 5.3e-16 88.2 131 38.2
BcaB01g02256 Brassica carinata HOM05D006065 ORTHO05D027546 9.0e-16 87.4 136 46.3
AL1G10640 Arabidopsis lyrata HOM05D006065 ORTHO05D007672 1.5e-15 86.7 142 42.3
C09p00430 Brassica napus HOM05D036798 ORTHO05D027546 1.5e-15 86.7 122 52.5
Phvul.008G067900 Phaseolus vulgaris HOM05D006065 ORTHO05D007672 1.5e-15 86.7 131 36.6
CANSAT56G3634 Cannabis sativa HOM05D006065 ORTHO05D007672 2.0e-15 86.3 137 39.4
Gorai.004G158400 Gossypium raimondii HOM05D006065 ORTHO05D007672 2.0e-15 86.3 138 39.1
HanXRQChr13g0426531 Helianthus annuus HOM05D006065 ORTHO05D007672 3.4e-15 85.5 139 36.0
QL08p049008 Quercus lobata HOM05D006065 ORTHO05D007672 5.8e-15 84.7 137 38.0
Medtr7g076690 Medicago truncatula HOM05D006065 ORTHO05D007672 7.6e-15 84.3 122 38.5
Actinidia20914 Actinidia chinensis HOM05D006065 ORTHO05D007672 1.3e-14 83.6 133 37.6
Gohir.D08G152500 Gossypium hirsutum HOM05D006065 ORTHO05D007672 1.3e-14 83.6 138 37.7
Gorai.007G098900 Gossypium raimondii HOM05D006065 ORTHO05D007672 1.3e-14 83.6 132 41.7
Atru.chr5.461 Acer truncatum HOM05D006065 ORTHO05D007672 2.2e-14 82.8 133 39.1
Lsat_1_v5_gn_7_4500 Lactuca sativa HOM05D006065 ORTHO05D007672 2.9e-14 82.4 137 40.9
Duzib133G1075 Durio zibethinus HOM05D006065 ORTHO05D007672 3.8e-14 82.0 132 40.9
Glyma.18G230000 Glycine max HOM05D006065 ORTHO05D007672 3.8e-14 82.0 125 36.8
Cpa.g.sc18.247 Carica papaya HOM05D006065 ORTHO05D007672 4.9e-14 81.6 130 38.5
arahy.Tifrunner.gnm1.ann1.QD83TI Arachis hypogaea HOM05D006065 ORTHO05D007672 8.4e-14 80.9 128 35.2
BolC9t52979H Brassica oleracea HOM05D036798 ORTHO05D027546 8.4e-14 80.9 121 51.2
Dinv43807 Davidia involucrata HOM05D006065 ORTHO05D007672 8.4e-14 80.9 148 36.5
Lj1g0009386 Lotus japonicus HOM05D006065 ORTHO05D007672 8.4e-14 80.9 135 36.3
Duzib138G1923 Durio zibethinus HOM05D006065 ORTHO05D007672 1.4e-13 80.1 133 40.6
Ca_07890_v3 Cicer arietinum L. HOM05D006065 ORTHO05D007672 2.4e-13 79.3 123 35.8
Glyma.09G262200 Glycine max HOM05D006065 ORTHO05D007672 2.4e-13 79.3 128 36.7
MBI18_g21561_MAGBIO Magnolia biondii HOM05D006065 ORTHO05D007672 2.4e-13 79.3 142 39.4
TPR.G37820 Trifolium pratense HOM05D006065 ORTHO05D007672 3.2e-13 79.0 133 34.6
TAR629G3005 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.2e-13 79.0 149 36.9
Psat3g110920 Pisum sativum HOM05D006065 ORTHO05D007672 5.5e-13 78.2 130 36.2
Sabra14G0060500 Salix brachista HOM05D006065 ORTHO05D007672 5.5e-13 78.2 127 39.4
DCAR_006926 Daucus carota HOM05D006065 ORTHO05D007672 9.3e-13 77.4 145 37.9
Prupe.2G168300 Prunus persica HOM05D006065 ORTHO05D007672 9.3e-13 77.4 141 40.4
Sabra02G0126300 Salix brachista HOM05D006065 ORTHO05D007672 2.7e-12 75.9 126 40.5
SalBow3G2602 Salvia bowleyana HOM05D006065 ORTHO05D007672 3.5e-12 75.5 135 38.5
Potri.014G083100 Populus trichocarpa HOM05D006065 ORTHO05D007672 4.6e-12 75.1 148 39.9
RcHm_v2.0_Chr1g0355101 Rosa chinensis HOM05D006065 ORTHO05D007672 4.6e-12 75.1 127 38.6
MSTRG.4858 Avicennia marina HOM05D006065 ORTHO05D007672 1.0e-11 73.9 154 35.1
SGA_v2.0_scaffold11G05664 Striga asiatica HOM05D006065 ORTHO05D007672 1.3e-11 73.6 141 37.6
Lalb_Chr19g0127061 Lupinus albus HOM05D006065 ORTHO05D007672 1.8e-11 73.2 130 34.6
arahy.Tifrunner.gnm1.ann1.WJC6IK Arachis hypogaea HOM05D006065 ORTHO05D007672 2.3e-11 72.8 164 31.1
CiPaw.02G030100 Carya illinoinensis HOM05D006065 ORTHO05D007672 2.3e-11 72.8 119 36.1
Migut.N01441 Erythranthe guttata HOM05D006065 ORTHO05D007672 2.3e-11 72.8 143 35.0
Manes.05G035300 Manihot esculenta HOM05D006065 ORTHO05D007672 2.3e-11 72.8 149 37.6
FAN03G2883 Fragaria x ananassa HOM05D006065 ORTHO05D007672 3.0e-11 72.4 124 39.5
Gohir.A11G088300 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.1e-11 71.6 132 38.6
Gohir.D11G092600 Gossypium hirsutum HOM05D006065 ORTHO05D007672 5.1e-11 71.6 132 38.6
TWI14G0791 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 5.1e-11 71.6 139 36.0
FAN10G0270 Fragaria x ananassa HOM05D006065 ORTHO05D007672 6.7e-11 71.2 126 40.5
GSVIVG01018349001 Vitis vinifera HOM05D006065 ORTHO05D007672 6.7e-11 71.2 118 38.1
unitig_8.g3395 Utricularia gibba HOM05D006065 ORTHO05D007672 8.7e-11 70.9 140 35.0
Cc02_g37900 Coffea canephora HOM05D006065 ORTHO05D007672 1.1e-10 70.5 122 36.1
FvH4_7g14190 Fragaria vesca HOM05D006065 ORTHO05D007672 1.5e-10 70.1 124 39.5
FAN01G0390 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.5e-10 70.1 124 39.5
Oeu010611.1 Olea europaea HOM05D006065 ORTHO05D007672 1.5e-10 70.1 141 36.9
Hund16927 Selenicereus undatus HOM05D006065 ORTHO05D007672 1.9e-10 69.7 138 34.8
TWI59G0879 Tripterygium wilfordii HOM05D006065 ORTHO05D007672 2.5e-10 69.3 143 34.3
PGSC0003DMG400000036 Solanum tuberosum HOM05D006065 ORTHO05D007672 3.3e-10 68.9 138 37.0
Hma1.2p1_0001F.1_g001420 Hydrangea macrophylla HOM05D006065 ORTHO05D007672 4.3e-10 68.6 149 34.9
Sopen01g038320 Solanum pennellii HOM05D006065 ORTHO05D007672 4.3e-10 68.6 130 35.4
Manes.01G258100 Manihot esculenta HOM05D006065 ORTHO05D007672 7.4e-10 67.8 131 37.4
GSVIVG01026900001 Vitis vinifera HOM05D006065 ORTHO05D007672 7.4e-10 67.8 118 37.3
PGR031G0376 Punica granatum HOM05D006065 ORTHO05D007672 9.6e-10 67.4 147 34.7
MSTRG.28221 Avicennia marina HOM05D006065 ORTHO05D007672 1.3e-09 67.0 134 36.6
ClCG05G001580 Citrullus lanatus HOM05D006065 ORTHO05D007672 1.6e-09 66.6 138 34.8
FAN06G3847 Fragaria x ananassa HOM05D006065 ORTHO05D007672 1.6e-09 66.6 124 37.9
Sc01g0003370 Simmondsia chinensis HOM05D006065 ORTHO05D007672 1.6e-09 66.6 138 35.5
FAN06G3027 Fragaria x ananassa HOM05D006065 ORTHO05D007672 2.1e-09 66.2 124 37.9
CAN.G78.55 Capsicum annuum HOM05D006065 ORTHO05D007672 3.7e-09 65.5 147 32.0
CsaV3_3G008970 Cucumis sativus L. HOM05D006065 ORTHO05D007672 6.2e-09 64.7 132 34.1
Sed0025321 Sechium edule HOM05D006065 ORTHO05D007672 6.2e-09 64.7 141 35.5
vmacro13279 Vaccinium macrocarpon HOM05D006065 ORTHO05D007672 6.2e-09 64.7 135 33.3
PSO832G3783 Papaver somniferum HOM05D006065 ORTHO05D007672 1.1e-08 63.9 144 29.9
Ah.05g180670 Amaranthus hybridus HOM05D006065 ORTHO05D007672 1.8e-08 63.2 123 35.0
SGA_v2.0_scaffold43G16421 Striga asiatica HOM05D006065 ORTHO05D007672 1.8e-08 63.2 142 33.1
HPP92_008504 Vanilla planifolia HOM05D006065 ORTHO05D007672 1.8e-08 63.2 124 31.5
EL10Ac1g00426 Beta vulgaris HOM05D006065 ORTHO05D007672 5.3e-08 61.6 111 35.1
Peaxi162Scf00020g00240 Petunia axillaris HOM05D006065 ORTHO05D007672 5.3e-08 61.6 119 32.8
PSO210G7571 Papaver somniferum HOM05D006065 ORTHO05D007672 1.5e-07 60.1 144 28.5
Aqoxy7G00322 Aquilegia oxysepala HOM05D006065 ORTHO05D007672 2.0e-07 59.7 123 31.7
Solyc05g049940.3 Solanum lycopersicum HOM05D006065 ORTHO05D007672 2.0e-07 59.7 112 36.6
PGSC0003DMG400021646 Solanum tuberosum HOM05D006065 ORTHO05D007672 2.0e-07 59.7 114 35.1
TAR374G1295 Trochodendron aralioides HOM05D006065 ORTHO05D007672 3.4e-07 58.9 146 32.9
Sopen05g028300 Solanum pennellii HOM05D006065 ORTHO05D007672 5.8e-07 58.2 112 35.7
MD07G1138600 Malus domestica HOM05D006065 ORTHO05D007672 2.2e-06 56.2 114 38.6
SEGI_06767 Sequoiadendron giganteum HOM05D006065 ORTHO05D007672 6.5e-06 54.7 118 31.4


User provided reference genes

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