Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06858 Brassica carinata HOM05D002977 ORTHO05D003225 2.0e-228 795.4 410 100.0
C03p39020 Brassica napus HOM05D002977 ORTHO05D003225 3.4e-223 778.1 410 97.6
BolC3t16174H Brassica oleracea HOM05D002977 ORTHO05D003225 3.4e-223 778.1 410 97.6
BraA03t12372Z Brassica rapa HOM05D002977 ORTHO05D003225 1.3e-211 739.6 400 94.5
A03p32000 Brassica napus HOM05D002977 ORTHO05D003225 5.0e-211 737.6 403 94.0
BcaB01g02155 Brassica carinata HOM05D002977 ORTHO05D003225 3.5e-188 661.8 408 86.8
Sp6g00770 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.4e-165 585.9 430 76.5
Thhalv10029270m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 1.8e-163 579.7 428 74.8
Carub.0006s3643 Capsella rubella HOM05D002977 ORTHO05D003225 8.4e-150 534.3 428 71.0
AL6G52680 Arabidopsis lyrata HOM05D002977 ORTHO05D003225 7.9e-148 527.7 431 70.5
AT4G00770 Arabidopsis thaliana HOM05D002977 ORTHO05D003225 5.1e-147 525.0 430 70.5
CARHR248960 Cardamine hirsuta HOM05D002977 ORTHO05D003225 3.4e-143 512.3 433 68.4
Aa31LG5G240 Aethionema arabicum HOM05D002977 ORTHO05D003225 2.8e-121 439.5 475 60.4
THA.LOC104801463 Tarenaya hassleriana HOM05D002977 ORTHO05D003225 2.8e-105 386.3 449 55.2
COL.COLO4_06963 Corchorus olitorius HOM05D002977 ORTHO05D003225 1.4e-56 224.6 451 39.0
Potri.002G152700 Populus trichocarpa HOM05D002977 ORTHO05D003225 7.3e-53 212.2 458 38.2
Cpa.g.c33531 Carica papaya HOM05D002977 ORTHO05D003225 9.6e-53 211.8 438 39.5
QL08p050716 Quercus lobata HOM05D002977 ORTHO05D003225 1.3e-52 211.5 433 41.3
Thecc.01G369200 Theobroma cacao HOM05D002977 ORTHO05D003225 1.6e-52 211.1 442 37.6
Sabra02G0121100 Salix brachista HOM05D002977 ORTHO05D003225 2.6e-50 203.8 461 36.4
TWI59G0633 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 7.1e-48 195.7 445 39.6
Atru.chr5.400 Acer truncatum HOM05D002977 ORTHO05D003225 1.8e-46 191.0 421 38.5
Haze_15232 Corylus avellana HOM05D002977 ORTHO05D003225 3.0e-46 190.3 420 39.0
Duzib138G0317 Durio zibethinus HOM05D002977 ORTHO05D003225 3.9e-46 189.9 481 36.8
FAN10G0205 Fragaria x ananassa HOM05D002977 ORTHO05D003225 9.6e-45 185.3 433 35.6
RcHm_v2.0_Chr1g0352121 Rosa chinensis HOM05D002977 ORTHO05D003225 2.1e-44 184.1 436 37.6
FAN06G3334 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.7e-44 183.3 430 36.5
FAN10G1938 Fragaria x ananassa HOM05D002977 ORTHO05D003225 3.7e-44 183.3 434 35.0
MD01G1047600 Malus domestica HOM05D002977 ORTHO05D003225 6.2e-44 182.6 454 35.5
MD07G1125600 Malus domestica HOM05D002977 ORTHO05D003225 1.4e-43 181.4 460 35.9
Sabra14G0054900 Salix brachista HOM05D002977 ORTHO05D003225 6.9e-43 179.1 457 36.1
Potri.014G077400 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.6e-42 177.2 461 34.9
FvH4_7g12980 Fragaria vesca HOM05D002977 ORTHO05D003225 5.8e-42 176.0 436 35.3
FAN06G4128 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.9e-41 172.9 442 35.3
Cfa004177 Carpinus fangiana HOM05D002977 ORTHO05D003225 3.2e-40 170.2 423 37.8
Glyma.07G079500 Glycine max HOM05D002977 ORTHO05D003225 4.2e-40 169.9 425 34.6
VMungo0331G1467 Vigna mungo HOM05D002977 ORTHO05D003225 1.1e-35 155.2 425 33.6
Prupe.2G153900 Prunus persica HOM05D002977 ORTHO05D003225 1.8e-35 154.5 463 33.7
Glyma.03G017800 Glycine max HOM05D002977 ORTHO05D003225 3.1e-35 153.7 431 33.6
CANSAT56G0238 Cannabis sativa HOM05D002977 ORTHO05D003225 4.1e-35 153.3 444 33.3
FAN01G0110 Fragaria x ananassa HOM05D002977 ORTHO05D003225 4.5e-34 149.8 451 33.0
Peaxi162Scf00021g00041 Petunia axillaris HOM05D002977 ORTHO05D003225 5.9e-34 149.4 453 34.0
CSS0040991 Camellia sinensis var. sinensis HOM05D002977 ORTHO05D003225 7.6e-34 149.1 411 33.6
Gohir.A08G129200 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.0e-33 148.7 432 32.4
Gohir.D08G150500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.3e-33 148.3 432 31.9
Gorai.004G156200 Gossypium raimondii HOM05D002977 ORTHO05D003225 1.3e-33 148.3 432 31.7
Peaxi162Scf00233g00015 Petunia axillaris HOM05D002977 ORTHO05D003225 2.9e-33 147.1 432 33.1
Aqoxy7G00463 Aquilegia oxysepala HOM05D002977 ORTHO05D003225 3.8e-33 146.7 450 32.4
Phvul.010G089700 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 9.3e-32 142.1 337 35.3
Ciclev10020246m.g Citrus clementina HOM05D002977 ORTHO05D003225 6.1e-31 139.4 473 32.6
GSVIVG01027598001 Vitis vinifera HOM05D002977 ORTHO05D003225 1.3e-30 138.3 433 33.7
Nn6g34271 Nelumbo nucifera HOM05D002977 ORTHO05D003225 3.9e-30 136.7 487 32.0
PGSC0003DMG400017053 Solanum tuberosum HOM05D002977 ORTHO05D003225 1.1e-29 135.2 427 33.3
Dinv37695 Davidia involucrata HOM05D002977 ORTHO05D003225 5.7e-29 132.9 465 31.8
Lalb_Chr10g0097561 Lupinus albus HOM05D002977 ORTHO05D003225 9.7e-29 132.1 423 31.4
Sopen01g037600 Solanum pennellii HOM05D002977 ORTHO05D003225 6.3e-28 129.4 428 31.1
Nn1g01342 Nelumbo nucifera HOM05D002977 ORTHO05D003225 2.4e-27 127.5 492 31.1
Hma1.2p1_0132F.1_g060810 Hydrangea macrophylla HOM05D002977 ORTHO05D003225 4.1e-27 126.7 428 33.9
Dinv43754 Davidia involucrata HOM05D002977 ORTHO05D003225 5.3e-27 126.3 424 31.4
Solyc01g091830.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 6.9e-27 125.9 430 30.0
Ca_23758_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.6e-26 124.0 431 30.2
Medtr8g032770 Medicago truncatula HOM05D002977 ORTHO05D003225 3.4e-26 123.6 441 32.2
Prupe.5G089800 Prunus persica HOM05D002977 ORTHO05D003225 1.0e-25 122.1 471 30.1
Cc08_g13950 Coffea canephora HOM05D002977 ORTHO05D003225 1.3e-25 121.7 466 29.8
CAN.G170.54 Capsicum annuum HOM05D002977 ORTHO05D003225 2.2e-25 120.9 448 31.0
Manes.05G040400 Manihot esculenta HOM05D002977 ORTHO05D003225 2.2e-25 120.9 440 31.4
Lsat_1_v5_gn_7_8261 Lactuca sativa HOM05D002977 ORTHO05D003225 1.4e-24 118.2 425 31.3
vmacro20976 Vaccinium macrocarpon HOM05D002977 ORTHO05D003225 1.9e-24 117.9 426 31.9
TAR629G3293 Trochodendron aralioides HOM05D002977 ORTHO05D003225 9.4e-24 115.5 388 31.4
Actinidia33447 Actinidia chinensis HOM05D002977 ORTHO05D003225 2.1e-23 114.4 425 33.9
Duzib133G0091 Durio zibethinus HOM05D002977 ORTHO05D003225 2.7e-23 114.0 229 36.7
MBI04_g42596_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 7.9e-23 112.5 450 31.8
arahy.Tifrunner.gnm1.ann1.YQQF81 Arachis hypogaea HOM05D002977 ORTHO05D003225 1.4e-22 111.7 453 28.7
Eucgr.E00281 Eucalyptus grandis HOM05D002977 ORTHO05D003225 1.4e-22 111.7 431 29.0
arahy.Tifrunner.gnm1.ann1.XNH79U Arachis hypogaea HOM05D002977 ORTHO05D003225 1.8e-22 111.3 450 28.9
Psat4g151680 Pisum sativum HOM05D002977 ORTHO05D003225 2.3e-22 110.9 434 31.1
Nitab4.5_0004550g0040 Nicotiana tabacum HOM05D002977 ORTHO05D003225 3.0e-22 110.5 444 31.1
TWI14G0163 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.0e-22 110.5 432 29.6
Manes.01G067700 Manihot esculenta HOM05D002977 ORTHO05D003225 3.9e-22 110.2 472 29.2
Lj3g0026127 Lotus japonicus HOM05D002977 ORTHO05D003225 5.1e-22 109.8 428 29.9
Thecc.03G270800 Theobroma cacao HOM05D002977 ORTHO05D003225 2.0e-21 107.8 480 30.0
Migut.E01299 Erythranthe guttata HOM05D002977 ORTHO05D003225 3.3e-21 107.1 439 29.2
Gorai.004G207700 Gossypium raimondii HOM05D002977 ORTHO05D003225 4.3e-21 106.7 470 28.5
Nitab4.5_0000134g0230 Nicotiana tabacum HOM05D002977 ORTHO05D003225 7.4e-21 105.9 427 31.9
A02p24230 Brassica napus HOM05D002977 ORTHO05D040183 9.7e-21 105.5 119 58.8
Gohir.A08G178500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 1.3e-20 105.1 466 29.2
Actinidia02049 Actinidia chinensis HOM05D002977 ORTHO05D003225 2.8e-20 104.0 479 29.4
CANSAT21G2154 Cannabis sativa HOM05D002977 ORTHO05D003225 2.8e-20 104.0 487 29.4
Manes.01G262800 Manihot esculenta HOM05D002977 ORTHO05D003225 3.7e-20 103.6 420 29.0
CiPaw.11G141500 Carya illinoinensis HOM05D002977 ORTHO05D003225 8.2e-20 102.4 484 29.5
SGA_v2.0_scaffold196G40889 Striga asiatica HOM05D002977 ORTHO05D003225 1.1e-19 102.1 443 26.9
AUR62010660 Chenopodium quinoa HOM05D002977 ORTHO05D003225 1.8e-19 101.3 445 28.1
Oeu059227.1 Olea europaea HOM05D002977 ORTHO05D003225 2.4e-19 100.9 412 31.6
MBI12_g11809_MAGBIO Magnolia biondii HOM05D002977 ORTHO05D003225 3.1e-19 100.5 444 29.7
RcHm_v2.0_Chr7g0199421 Rosa chinensis HOM05D002977 ORTHO05D003225 4.1e-19 100.1 487 29.2
MSTRG.25572 Avicennia marina HOM05D002977 ORTHO05D003225 5.3e-19 99.8 463 27.9
Atru.chr9.1537 Acer truncatum HOM05D002977 ORTHO05D003225 1.5e-18 98.2 462 27.7
Haze_08955 Corylus avellana HOM05D002977 ORTHO05D003225 2.6e-18 97.4 466 30.5
CAN.G981.38 Capsicum annuum HOM05D002977 ORTHO05D003225 3.4e-18 97.1 465 26.5
Oeu059228.1 Olea europaea HOM05D002977 ORTHO05D003225 3.4e-18 97.1 274 36.5
Cc02_g37200 Coffea canephora HOM05D002977 ORTHO05D003225 5.9e-18 96.3 430 29.8
Gohir.D08G197000 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.9e-18 96.3 470 27.7
Duzib084G1184 Durio zibethinus HOM05D002977 ORTHO05D003225 1.3e-17 95.1 492 28.9
Sopen08g028630 Solanum pennellii HOM05D002977 ORTHO05D003225 1.3e-17 95.1 472 30.7
Duzib205G0359 Durio zibethinus HOM05D002977 ORTHO05D003225 1.7e-17 94.7 478 28.2
DCAR_008585 Daucus carota HOM05D002977 ORTHO05D003225 2.9e-17 94.0 405 29.1
Potri.003G121100 Populus trichocarpa HOM05D002977 ORTHO05D003225 3.8e-17 93.6 467 28.1
SGA_v2.0_scaffold286G47104 Striga asiatica HOM05D002977 ORTHO05D003225 5.0e-17 93.2 450 28.9
HanXRQChr06g0168991 Helianthus annuus HOM05D002977 ORTHO05D003225 8.5e-17 92.4 370 27.8
FAN13G0210 Fragaria x ananassa HOM05D002524 ORTHO05D002718 1.1e-16 92.0 451 25.7
Ah.02g116430 Amaranthus hybridus HOM05D002977 ORTHO05D003225 1.4e-16 91.7 473 27.3
Actinidia14518 Actinidia chinensis HOM05D000078 ORTHO05D003225 2.5e-16 90.9 317 31.5
MSTRG.20788 Avicennia marina HOM05D002977 ORTHO05D003225 2.5e-16 90.9 401 30.4
Oeu024421.1 Olea europaea HOM05D002977 ORTHO05D003225 2.5e-16 90.9 412 30.8
Potri.001G110900 Populus trichocarpa HOM05D002977 ORTHO05D003225 2.5e-16 90.9 461 27.3
TWI81G0253 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 3.2e-16 90.5 466 29.2
FvH4_5g01430 Fragaria vesca HOM05D002977 ORTHO05D003225 5.5e-16 89.7 479 27.1
FAN04G2551 Fragaria x ananassa HOM05D002524 ORTHO05D002718 5.5e-16 89.7 480 25.6
CiPaw.02G024700 Carya illinoinensis HOM05D002977 ORTHO05D003225 9.4e-16 89.0 228 34.2
Solyc08g080280.3 Solanum lycopersicum HOM05D002977 ORTHO05D003225 1.2e-15 88.6 469 30.1
Sabra03G0085100 Salix brachista HOM05D002977 ORTHO05D003225 1.6e-15 88.2 464 26.5
Nitab4.5_0003356g0060 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.1e-15 87.8 422 29.9
FAN18G2499 Fragaria x ananassa HOM05D002524 ORTHO05D002718 2.7e-15 87.4 493 27.0
COL.COLO4_05272 Corchorus olitorius HOM05D002977 ORTHO05D003225 3.6e-15 87.0 472 26.7
Oeu024422.1 Olea europaea HOM05D002977 ORTHO05D003225 3.6e-15 87.0 412 30.3
Cfa012096 Carpinus fangiana HOM05D002524 ORTHO05D002718 7.9e-15 85.9 461 30.6
Nitab4.5_0010430g0070 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.3e-14 84.3 195 36.9
QL12p017099 Quercus lobata HOM05D002977 ORTHO05D003225 2.3e-14 84.3 497 26.8
Nitab4.5_0011100g0010 Nicotiana tabacum HOM05D002977 ORTHO05D003225 3.0e-14 84.0 495 27.9
AUR62017299 Chenopodium quinoa HOM05D002977 ORTHO05D003225 3.9e-14 83.6 366 27.3
VMungo1215G3066 Vigna mungo HOM05D002977 ORTHO05D003225 3.9e-14 83.6 444 28.8
Hund16963 Selenicereus undatus HOM05D002977 ORTHO05D003225 5.1e-14 83.2 317 30.3
Peaxi162Scf00714g00621 Petunia axillaris HOM05D002977 ORTHO05D003225 8.8e-14 82.4 475 26.3
Sabra01G0084500 Salix brachista HOM05D002977 ORTHO05D003225 8.8e-14 82.4 457 27.6
PGSC0003DMG400022757 Solanum tuberosum HOM05D002977 ORTHO05D003225 3.3e-13 80.5 479 27.6
Ah.16g108930 Amaranthus hybridus HOM05D002977 ORTHO05D003225 5.7e-13 79.7 280 32.5
Lsat_1_v5_gn_6_13021 Lactuca sativa HOM05D002977 ORTHO05D003225 2.2e-12 77.8 463 26.8
PGR042G2435 Punica granatum HOM05D002977 ORTHO05D003225 2.8e-12 77.4 457 26.7
Manes.02G027900 Manihot esculenta HOM05D002977 ORTHO05D003225 1.1e-11 75.5 482 26.8
EL10Ac1g00967 Beta vulgaris HOM05D002977 ORTHO05D003225 2.4e-11 74.3 295 29.2
Nitab4.5_0001714g0160 Nicotiana tabacum HOM05D002977 ORTHO05D003225 2.4e-11 74.3 496 26.4
CsaV3_5G003260 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.1e-11 73.6 463 27.2
Migut.A00919 Erythranthe guttata HOM05D002977 ORTHO05D003225 4.1e-11 73.6 453 26.7
FAN08G2595 Fragaria x ananassa HOM05D002524 ORTHO05D002718 4.1e-11 73.6 473 24.7
PGR042G2476 Punica granatum HOM05D002977 ORTHO05D003225 4.1e-11 73.6 496 26.2
ClCG01G003130 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.6e-10 71.6 447 25.1
Sed0005409 Sechium edule HOM05D002977 ORTHO05D003225 1.6e-10 71.6 434 25.6
Dinv39013 Davidia involucrata HOM05D002977 ORTHO05D003225 5.9e-10 69.7 361 28.8
ECA236G0338 Erigeron canadensis HOM05D002977 ORTHO05D003225 5.9e-10 69.7 420 27.1
Gohir.A12G224700 Gossypium hirsutum HOM05D002977 ORTHO05D003225 7.7e-10 69.3 440 27.3
Migut.B01683 Erythranthe guttata HOM05D002977 ORTHO05D003225 1.0e-09 68.9 349 29.2
TPR.G37675 Trifolium pratense HOM05D002977 ORTHO05D003225 1.0e-09 68.9 435 25.5
ClCG05G001920 Citrullus lanatus HOM05D002977 ORTHO05D003225 1.3e-09 68.6 181 34.3
ECA233G2885 Erigeron canadensis HOM05D002977 ORTHO05D003225 1.3e-09 68.6 449 23.6
Psat4g067560 Pisum sativum HOM05D002977 ORTHO05D003225 1.3e-09 68.6 416 25.7
Sp7g21110 Schrenkiella parvula HOM05D002977 ORTHO05D003225 2.2e-09 67.8 468 27.4
Ciclev10023310m.g Citrus clementina HOM05D002977 ORTHO05D003225 2.9e-09 67.4 203 30.5
DCAR_006904 Daucus carota HOM05D002977 ORTHO05D003225 2.9e-09 67.4 400 26.8
Gorai.008G243500 Gossypium raimondii HOM05D002977 ORTHO05D003225 2.9e-09 67.4 442 27.4
Medtr4g102650 Medicago truncatula HOM05D002977 ORTHO05D003225 3.8e-09 67.0 419 27.0
MELO3C005628.2 Cucumis melo HOM05D002977 ORTHO05D003225 5.0e-09 66.6 471 25.3
MELO3C006152.2 Cucumis melo HOM05D002977 ORTHO05D003225 6.5e-09 66.2 213 32.4
GSVIVG01019863001 Vitis vinifera HOM05D002977 ORTHO05D003225 8.5e-09 65.9 188 33.0
Phvul.003G212900 Phaseolus vulgaris HOM05D002977 ORTHO05D003225 1.1e-08 65.5 469 26.0
Lj2A196T48 Lonicera japonica HOM05D002977 ORTHO05D003225 1.9e-08 64.7 311 28.9
Lj4g0001816 Lotus japonicus HOM05D002977 ORTHO05D003225 2.5e-08 64.3 443 24.4
ATR0757G071 Amborella trichopoda HOM05D003485 ORTHO05D004004 3.2e-08 63.9 250 30.8
CsaV3_3G009320 Cucumis sativus L. HOM05D002977 ORTHO05D003225 4.2e-08 63.5 193 31.6
Aa31LG9G10650 Aethionema arabicum HOM05D002977 ORTHO05D003225 5.5e-08 63.2 460 25.2
Gohir.D12G227500 Gossypium hirsutum HOM05D002977 ORTHO05D003225 5.5e-08 63.2 442 26.7
SGA_v2.0_scaffold153G37063 Striga asiatica HOM05D002977 ORTHO05D003225 1.2e-07 62.0 202 29.7
Ca_20242_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.7e-07 60.8 427 25.5
Ca_29496_v3 Cicer arietinum L. HOM05D002977 ORTHO05D003225 2.7e-07 60.8 427 25.5
HanXRQChr07g0188421 Helianthus annuus HOM05D002977 ORTHO05D003225 6.1e-07 59.7 451 25.1
MD04G1068300 Malus domestica HOM05D002977 ORTHO05D003225 1.4e-06 58.5 238 28.6
Thhalv10025169m.g Eutrema salsugineum HOM05D002977 ORTHO05D003225 1.8e-06 58.2 454 25.3
Hund28360 Selenicereus undatus HOM05D002977 ORTHO05D003225 3.0e-06 57.4 443 26.0
Hund28364 Selenicereus undatus HOM05D002977 ORTHO05D003225 3.0e-06 57.4 443 26.0
CARHR230080 Cardamine hirsuta HOM05D002977 ORTHO05D003225 4.0e-06 57.0 425 26.8
AUR62033369 Chenopodium quinoa HOM05D049868 ORTHO05D003225 6.7e-06 56.2 286 29.0
TWI60G0323 Tripterygium wilfordii HOM05D002977 ORTHO05D003225 6.7e-06 56.2 482 24.3


User provided reference genes

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