Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g06839 Brassica carinata HOM05D001772 ORTHO05D008903 1.2e-250 869.4 432 100.0
BolC3t16157H Brassica oleracea HOM05D001772 ORTHO05D008903 4.4e-242 840.9 431 97.2
C03p38820 Brassica napus HOM05D001772 ORTHO05D008903 3.5e-239 831.2 431 96.1
A03p31810 Brassica napus HOM05D001772 ORTHO05D008903 9.3e-232 806.6 431 92.6
BraA03t12356Z Brassica rapa HOM05D001772 ORTHO05D008903 2.5e-229 798.5 431 91.6
BcaB01g02345 Brassica carinata HOM05D001772 ORTHO05D008903 4.0e-227 791.2 418 92.6
Sp6g01100 Schrenkiella parvula HOM05D001772 ORTHO05D008903 4.2e-208 728.0 428 84.1
AT4G01040 Arabidopsis thaliana HOM05D001772 ORTHO05D008903 1.3e-204 716.5 427 83.6
Carub.0006s3610 Capsella rubella HOM05D001772 ORTHO05D008903 6.3e-204 714.1 427 82.4
Thhalv10028671m.g Eutrema salsugineum HOM05D001772 ORTHO05D008903 1.8e-203 712.6 429 83.2
CARHR249250 Cardamine hirsuta HOM05D001772 ORTHO05D008903 1.8e-198 696.0 429 80.7
Aa31LG5G920 Aethionema arabicum HOM05D001772 ORTHO05D008903 3.7e-196 688.3 429 79.7
THA.LOC104825876 Tarenaya hassleriana HOM05D001772 ORTHO05D008903 2.3e-182 642.5 429 72.7
GSVIVG01027076001 Vitis vinifera HOM05D001772 ORTHO05D008903 3.3e-160 568.9 431 64.7
Gohir.A12G111500 Gossypium hirsutum HOM05D001772 ORTHO05D008903 3.6e-159 565.5 432 65.3
Dinv18731 Davidia involucrata HOM05D001772 ORTHO05D008903 6.1e-159 564.7 435 63.9
Gohir.D12G114800 Gossypium hirsutum HOM05D001772 ORTHO05D008903 1.0e-158 563.9 432 65.0
Gorai.008G124300 Gossypium raimondii HOM05D001772 ORTHO05D008903 1.0e-158 563.9 432 65.0
Ciclev10020231m.g Citrus clementina HOM05D001772 ORTHO05D008903 6.8e-158 561.2 430 64.2
Thecc.01G344900 Theobroma cacao HOM05D001772 ORTHO05D008903 6.8e-158 561.2 438 63.7
Cfa003819 Carpinus fangiana HOM05D001772 ORTHO05D008903 2.0e-157 559.7 425 63.3
CSS0012714 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 7.5e-157 557.8 428 63.3
Sabra14G0070800 Salix brachista HOM05D001772 ORTHO05D008903 1.3e-156 557.0 427 64.4
Potri.014G096700 Populus trichocarpa HOM05D001772 ORTHO05D008903 2.9e-156 555.8 429 63.9
Manes.05G024600 Manihot esculenta HOM05D001772 ORTHO05D008903 4.9e-156 555.1 430 63.5
TWI59G0809 Tripterygium wilfordii HOM05D001772 ORTHO05D008903 1.2e-154 550.4 430 64.9
QL04p013773 Quercus lobata HOM05D001772 ORTHO05D008903 1.0e-153 547.4 426 62.9
Atru.chr5.644 Acer truncatum HOM05D001772 ORTHO05D008903 2.3e-153 546.2 433 63.7
CANSAT56G1036 Cannabis sativa HOM05D001772 ORTHO05D008903 3.0e-153 545.8 436 61.5
Duzib138G1524 Durio zibethinus HOM05D001772 ORTHO05D008903 5.6e-152 541.6 429 63.4
RcHm_v2.0_Chr1g0359211 Rosa chinensis HOM05D001772 ORTHO05D008903 7.3e-152 541.2 428 61.2
MD07G1147600 Malus domestica HOM05D001772 ORTHO05D008903 1.6e-151 540.0 426 62.4
COL.COLO4_06307 Corchorus olitorius HOM05D001772 ORTHO05D008903 6.2e-151 538.1 430 62.8
Prupe.2G185600 Prunus persica HOM05D001772 ORTHO05D008903 1.1e-150 537.3 427 62.1
TAR375G0197 Trochodendron aralioides HOM05D001772 ORTHO05D008903 1.8e-150 536.6 431 61.9
CANSAT56G1679 Cannabis sativa HOM05D001772 ORTHO05D008903 3.1e-150 535.8 435 60.5
Lsat_1_v5_gn_3_139600 Lactuca sativa HOM05D001772 ORTHO05D008903 8.9e-150 534.3 423 61.5
TPR.G8988 Trifolium pratense HOM05D001772 ORTHO05D008903 1.7e-148 530.0 431 61.7
VMungo0540G0918 Vigna mungo HOM05D001772 ORTHO05D008903 9.2e-147 524.2 377 66.0
Aqoxy7G00133 Aquilegia oxysepala HOM05D001772 ORTHO05D008903 1.2e-146 523.9 437 59.3
vmacro13174 Vaccinium macrocarpon HOM05D001772 ORTHO05D008903 2.7e-146 522.7 430 60.7
MD01G1078600 Malus domestica HOM05D001772 ORTHO05D008903 7.8e-146 521.2 427 60.2
FvH4_7g16200 Fragaria vesca HOM05D001772 ORTHO05D008903 1.0e-145 520.8 429 61.5
Lj1g0009750 Lotus japonicus HOM05D001772 ORTHO05D008903 1.7e-145 520.0 428 61.7
Medtr5g025480 Medicago truncatula HOM05D001772 ORTHO05D008903 1.7e-145 520.0 429 60.6
Psat2g145680 Pisum sativum HOM05D001772 ORTHO05D008903 5.1e-145 518.5 429 61.3
Lalb_Chr04g0261581 Lupinus albus HOM05D001772 ORTHO05D008903 1.1e-144 517.3 347 70.9
Haze_15635 Corylus avellana HOM05D001772 ORTHO05D008903 5.6e-144 515.0 450 57.6
Eucgr.E00067 Eucalyptus grandis HOM05D001772 ORTHO05D008903 5.6e-144 515.0 432 59.3
CSS0002891 Camellia sinensis var. sinensis HOM05D001772 ORTHO05D008903 2.1e-143 513.1 400 62.2
Ca_25036_v3 Cicer arietinum L. HOM05D001772 ORTHO05D008903 2.1e-143 513.1 428 60.0
arahy.Tifrunner.gnm1.ann1.NY4TXX Arachis hypogaea HOM05D001772 ORTHO05D008903 4.7e-143 511.9 358 66.8
Nn3g19051 Nelumbo nucifera HOM05D001772 ORTHO05D008903 4.7e-143 511.9 434 58.1
PGR042G2345 Punica granatum HOM05D001772 ORTHO05D008903 6.2e-143 511.5 430 58.6
Glyma.03G256800 Glycine max HOM05D001772 ORTHO05D008903 1.8e-142 510.0 382 66.0
arahy.Tifrunner.gnm1.ann1.HV5NER Arachis hypogaea HOM05D001772 ORTHO05D008903 3.1e-142 509.2 358 67.0
FAN06G2365 Fragaria x ananassa HOM05D001772 ORTHO05D008903 8.9e-142 507.7 429 60.8
FAN06G4998 Fragaria x ananassa HOM05D001772 ORTHO05D008903 1.2e-141 507.3 426 61.3
Cc02_g39160 Coffea canephora HOM05D001772 ORTHO05D008903 2.6e-141 506.1 423 59.6
FAN03G0169 Fragaria x ananassa HOM05D001772 ORTHO05D008903 4.4e-141 505.4 429 60.1
FAN01G1646 Fragaria x ananassa HOM05D001772 ORTHO05D008903 5.8e-141 505.0 429 60.1
Migut.N01555 Erythranthe guttata HOM05D001772 ORTHO05D008903 5.4e-139 498.4 428 57.2
Rhsim07G0005700 Rhododendron simsii HOM05D001772 ORTHO05D008903 7.8e-138 494.6 433 57.0
FAN10G2954 Fragaria x ananassa HOM05D001772 ORTHO05D008903 3.0e-137 492.7 405 61.0
CAN.G239.5 Capsicum annuum HOM05D001772 ORTHO05D008903 5.1e-137 491.9 434 55.1
ClCG05G000920 Citrullus lanatus HOM05D001772 ORTHO05D008903 6.6e-137 491.5 385 61.3
PSO135G0498 Papaver somniferum HOM05D001772 ORTHO05D008903 6.6e-137 491.5 381 60.1
AUR62004469 Chenopodium quinoa HOM05D001772 ORTHO05D008903 2.5e-136 489.6 432 57.2
CsaV3_3G008150 Cucumis sativus L. HOM05D001772 ORTHO05D008903 1.2e-135 487.3 426 57.3
SGA_v2.0_scaffold11G05728 Striga asiatica HOM05D001772 ORTHO05D008903 2.1e-135 486.5 429 55.9
PSO384G4631 Papaver somniferum HOM05D001772 ORTHO05D008903 2.8e-135 486.1 381 60.4
AUR62023481 Chenopodium quinoa HOM05D001772 ORTHO05D008903 4.7e-135 485.3 436 56.4
SalBow5G1378 Salvia bowleyana HOM05D001772 ORTHO05D008903 1.1e-134 484.2 455 54.5
Solyc05g050320.4 Solanum lycopersicum HOM05D001772 ORTHO05D008903 6.8e-134 481.5 361 61.2
EL10Ac1g00295 Beta vulgaris HOM05D001772 ORTHO05D008903 1.2e-133 480.7 426 56.1
MBI06_g46729_MAGBIO Magnolia biondii HOM05D001772 ORTHO05D008903 1.2e-133 480.7 459 53.4
Oeu007903.1 Olea europaea HOM05D001772 ORTHO05D008903 2.6e-133 479.6 431 54.5
Sopen05g028720 Solanum pennellii HOM05D001772 ORTHO05D008903 2.6e-133 479.6 438 54.6
HanXRQChr11g0353031 Helianthus annuus HOM05D001772 ORTHO05D008903 9.9e-133 477.6 423 54.8
PGSC0003DMG402033880 Solanum tuberosum HOM05D001772 ORTHO05D008903 1.7e-132 476.9 364 61.0
Sc01g0002840 Simmondsia chinensis HOM05D001772 ORTHO05D008903 4.9e-132 475.3 430 55.6
Peaxi162Scf00403g00519 Petunia axillaris HOM05D001772 ORTHO05D008903 1.4e-131 473.8 423 53.9
Ah.05g179760 Amaranthus hybridus HOM05D001772 ORTHO05D008903 1.6e-130 470.3 419 57.0
Sed0004684 Sechium edule HOM05D001772 ORTHO05D008903 2.1e-130 469.9 384 60.7
Phvul.006G111900 Phaseolus vulgaris HOM05D001772 ORTHO05D008903 1.0e-129 467.6 314 71.7
Cpa.g.sc273.9 Carica papaya HOM05D001772 ORTHO05D008903 3.3e-128 462.6 350 67.1
Hund27212 Selenicereus undatus HOM05D001772 ORTHO05D008903 7.3e-128 461.5 424 54.0
DCAR_005380 Daucus carota HOM05D001772 ORTHO05D008903 1.2e-125 454.1 525 46.3
ECA240G4072 Erigeron canadensis HOM05D001772 ORTHO05D008903 2.2e-124 449.9 349 60.5
CDE10G0091 Ceratophyllum demersum HOM05D001772 ORTHO05D008903 3.5e-122 442.6 423 53.0
Lj9A595T55 Lonicera japonica HOM05D001772 ORTHO05D008903 7.8e-122 441.4 314 64.3
Nitab4.5_0000258g0130 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.0e-121 441.0 437 51.0
AL6G52340 Arabidopsis lyrata HOM05D001772 ORTHO05D008903 5.1e-121 438.7 246 85.8
MELO3C006034.2 Cucumis melo HOM05D001772 ORTHO05D008903 2.5e-120 436.4 429 54.1
Zm00001eb358410 Zea mays HOM05D001772 ORTHO05D008903 8.1e-119 431.4 429 51.3
HPP92_005515 Vanilla planifolia HOM05D001772 ORTHO05D008903 2.2e-116 423.3 427 50.8
Pp3c22_2040 Physcomitrium patens HOM05D001772 ORTHO05D008903 3.2e-91 339.7 433 43.6
SEGI_01392 Sequoiadendron giganteum HOM05D001772 ORTHO05D008903 2.8e-87 326.6 323 50.8
Actinidia10113 Actinidia chinensis HOM05D001772 ORTHO05D008903 1.8e-86 323.9 274 58.0
AagrBONN_evm.TU.Sc2ySwM_344.1652 Anthoceros agrestis HOM05D001772 ORTHO05D008903 8.8e-81 305.1 408 41.7
Mapoly0102s0038 Marchantia polymorpha HOM05D001772 ORTHO05D008903 4.1e-78 296.2 332 45.2
SMO347G0199 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 4.5e-77 292.7 329 47.1
SMO167G0031 Selaginella moellendorffii HOM05D001772 ORTHO05D008903 2.2e-76 290.4 314 48.4
CiPaw.01G074400 Carya illinoinensis HOM05D001772 ORTHO05D008903 1.5e-75 287.7 233 60.9
Nitab4.5_0004506g0060 Nicotiana tabacum HOM05D001772 ORTHO05D008903 4.2e-75 286.2 429 38.9
CBR_g3968 Chara braunii HOM05D001772 ORTHO05D008903 1.8e-70 270.8 393 35.9
Cre03.g200650 Chlamydomonas reinhardtii HOM05D001772 ORTHO05D008903 4.7e-58 229.6 365 33.7
ATR0589G019 Amborella trichopoda HOM05D001772 ORTHO05D008903 1.8e-46 191.0 182 54.4
Os01g0619800 Oryza sativa ssp. japonica HOM05D001772 ORTHO05D008903 1.5e-43 181.4 135 61.5
Nitab4.5_0015177g0010 Nicotiana tabacum HOM05D001772 ORTHO05D000634 1.0e-28 132.1 119 56.3
Zm00001eb297790 Zea mays HOM05D001772 ORTHO05D023027 2.8e-26 124.0 118 54.2
Glyma.19G255000 Glycine max HOM05D001772 ORTHO05D008903 8.9e-17 92.4 59 69.5
Nitab4.5_0015177g0020 Nicotiana tabacum HOM05D001772 ORTHO05D008903 1.7e-12 78.2 50 60.0


User provided reference genes

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